BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56418.1

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314913 jgi|Araly1|314913|fgenesh1_pm.C_scaffold_1003693           337    3e-92


> Ahg314913 jgi|Araly1|314913|fgenesh1_pm.C_scaffold_1003693
Length=237

 Score =  337 bits (182),  Expect = 3e-92
 Identities = 219/237 (92%), Gaps = 2/237 (1%)
 Strand=Plus/Plus

Query  42   ATGTCGAGTATGAATATGATCAAGATAACAATGATGATGGCTTTGGTACTAATGGGCGTG  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGAGTATGAATATGATCAAGATAACAATGATGATGGCTTTGGTACTAATGGGCGTG  60

Query  102  AGAGCAACGACTGTAACTCAGTCTCAAGAAACAGACCG-CAAGTTCGAGTGGAATAATGG  160
            ||||||| |||||| ||||||  ||||||||||||| | ||||||||| |||| ||||||
Sbjct  61   AGAGCAATGACTGTGACTCAGAGTCAAGAAACAGAC-GTCAAGTTCGACTGGACTAATGG  119

Query  161  AATGTACTGGAACCCAAAGATGTGTTATTTTATTTGCTCTGGACCTTGTGGTAAAGACAA  220
            |||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  120  AATGGACTGGAACCCGAGGATGTGTTATTATATTTGCTCTGGACCTTGTGGTAAAGACAA  179

Query  221  TAACTGTCGCCAACGTTGTAAGAAATGTTGTCATTGGCGGTGCATGGGTCCATCTTG  277
             ||||||| |||||||||||||||||||||||||||||  ||||||| ||||| |||
Sbjct  180  CAACTGTCTCCAACGTTGTAAGAAATGTTGTCATTGGCATTGCATGGATCCATGTTG  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9805986373


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5