BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56420.1 Length=773 Score E Sequences producing significant alignments: (Bits) Value Ahg474804 jgi|Araly1|474804|fgenesh2_kg.1__4758__AT1G56420.1 874 0.0 > Ahg474804 jgi|Araly1|474804|fgenesh2_kg.1__4758__AT1G56420.1 Length=659 Score = 874 bits (473), Expect = 0.0 Identities = 536/566 (95%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 1 ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT 60 Query 61 ACTATCGATGCTCTCCGATTAAGGATCATCAATCAGCTCAAAGCCAATGAAGAGTTAAAG 120 || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 61 ACCATCGATGCTCTTCGATTAAGAATCATCAATCAGCTTAAAGCCAATGAAGAGTTAAAG 120 Query 121 AGCACAACGATTAAAATGGCGGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCACAACGATTAAAATGGCAGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA 180 Query 181 CAGACTAAAAGAGAACTCTTTGATGCTCTTCGCCAAGAACTCGAAGGTCCAGTGCTAGAG 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CAGACTAAAAGAGAACTCTTTGATGCTCTTCGTCAAGAACTCGAAGGTCCAGTGCTAGAG 240 Query 241 AAGGCATCAAAATCAGTTTGGGATTTGATTATTGAGAAAGATGGGTTAGGAAAAGAGATA 300 |||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 241 AAGGCATCAAAATCAGTTTGGGATTTGATTCTTGAGAAGGATGGATTAGGGAAAGAGATA 300 Query 301 AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGTGGGCAAGAACCACCTTTTTATTCT 360 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 301 AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGCGGGCAAGAACCGCCTTTTTATTCT 360 Query 361 TCATCAAACGTGGAGAAAACTCCGATGGAGATAGATAAGGAGACGGAGGTGAAGGA---T 417 ||||||||||| |||||||| || ||||||||||| || ||||||||| ||||||| | Sbjct 361 TCATCAAACGTCGAGAAAACCCCAATGGAGATAGAGAAAGAGACGGAGATGAAGGAGAAT 420 Query 418 A---GCTCAAAGACGAAACCAAAGAAAAGAAGTCTTAGTGAGGTAAATTCCTCTGAAGGT 474 | ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 421 AATAGCTCAAAAACAAAACCAAAGAAAAGAAGTCTTAGTGAGGTGAATTCCTCTGAAGGT 480 Query 475 ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCTCAACTGTAACTTTAGAA 534 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 481 ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCGCAACTGTAACTTTAGAA 540 Query 535 TCTAGGAAAACGCCTTGAGCCTGGTT 560 |||| ||||||||||||||||| ||| Sbjct 541 TCTAAGAAAACGCCTTGAGCCTTGTT 566 Score = 95.3 bits (51), Expect = 6e-19 Identities = 60/64 (94%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 588 CTGAGTCTTCTGATATAGATTAGTCTTGGTGTTTTATTGTTGACATTGCTCTTCTCAACC 647 |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 570 CTGACTCTTCTGATATAGA-TAGTCTTGGTGTTTTATTGTTGACATTGCTCTTTTCAACT 628 Query 648 ATCT 651 |||| Sbjct 629 ATCT 632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28515941916 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5