BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56420.1
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474804 jgi|Araly1|474804|fgenesh2_kg.1__4758__AT1G56420.1 874 0.0
> Ahg474804 jgi|Araly1|474804|fgenesh2_kg.1__4758__AT1G56420.1
Length=659
Score = 874 bits (473), Expect = 0.0
Identities = 536/566 (95%), Gaps = 6/566 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT 60
Query 61 ACTATCGATGCTCTCCGATTAAGGATCATCAATCAGCTCAAAGCCAATGAAGAGTTAAAG 120
|| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 ACCATCGATGCTCTTCGATTAAGAATCATCAATCAGCTTAAAGCCAATGAAGAGTTAAAG 120
Query 121 AGCACAACGATTAAAATGGCGGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCACAACGATTAAAATGGCAGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA 180
Query 181 CAGACTAAAAGAGAACTCTTTGATGCTCTTCGCCAAGAACTCGAAGGTCCAGTGCTAGAG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CAGACTAAAAGAGAACTCTTTGATGCTCTTCGTCAAGAACTCGAAGGTCCAGTGCTAGAG 240
Query 241 AAGGCATCAAAATCAGTTTGGGATTTGATTATTGAGAAAGATGGGTTAGGAAAAGAGATA 300
|||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||
Sbjct 241 AAGGCATCAAAATCAGTTTGGGATTTGATTCTTGAGAAGGATGGATTAGGGAAAGAGATA 300
Query 301 AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGTGGGCAAGAACCACCTTTTTATTCT 360
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 301 AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGCGGGCAAGAACCGCCTTTTTATTCT 360
Query 361 TCATCAAACGTGGAGAAAACTCCGATGGAGATAGATAAGGAGACGGAGGTGAAGGA---T 417
||||||||||| |||||||| || ||||||||||| || ||||||||| ||||||| |
Sbjct 361 TCATCAAACGTCGAGAAAACCCCAATGGAGATAGAGAAAGAGACGGAGATGAAGGAGAAT 420
Query 418 A---GCTCAAAGACGAAACCAAAGAAAAGAAGTCTTAGTGAGGTAAATTCCTCTGAAGGT 474
| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AATAGCTCAAAAACAAAACCAAAGAAAAGAAGTCTTAGTGAGGTGAATTCCTCTGAAGGT 480
Query 475 ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCTCAACTGTAACTTTAGAA 534
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCGCAACTGTAACTTTAGAA 540
Query 535 TCTAGGAAAACGCCTTGAGCCTGGTT 560
|||| ||||||||||||||||| |||
Sbjct 541 TCTAAGAAAACGCCTTGAGCCTTGTT 566
Score = 95.3 bits (51), Expect = 6e-19
Identities = 60/64 (94%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 588 CTGAGTCTTCTGATATAGATTAGTCTTGGTGTTTTATTGTTGACATTGCTCTTCTCAACC 647
|||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 570 CTGACTCTTCTGATATAGA-TAGTCTTGGTGTTTTATTGTTGACATTGCTCTTTTCAACT 628
Query 648 ATCT 651
||||
Sbjct 629 ATCT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5