BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56423.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474805 jgi|Araly1|474805|fgenesh2_kg.1__4759__AT1G56423.1 1315 0.0
> Ahg474805 jgi|Araly1|474805|fgenesh2_kg.1__4759__AT1G56423.1
Length=1200
Score = 1315 bits (712), Expect = 0.0
Identities = 849/915 (93%), Gaps = 10/915 (1%)
Strand=Plus/Plus
Query 1 GAACCGACATATCCACATGGCTTT--TGGAGTCTTTGAATATTCCTTCCCTCTGACTTAT 58
||||||||||||||||||| |||| | ||||||| ||||||| ||| ||||||||| |
Sbjct 1 GAACCGACATATCCACATGACTTTGATTGAGTCTTCCAATATTCTTTCTCTCTGACTTGT 60
Query 59 GGTTTCCAGAAACCTTCCTCACACTCAAATGTTTTGTTCTTCTTAATCACAATTTCAGAA 118
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GGTTTCCTGAAACCTTCCTCACACTCAAATGTTTTGTTCTTCTTAGGCACAATTTCAGAA 120
Query 119 TTGGTCTTTTACGGTTAAGAATTCAGGATTGTGAATTGAAAAGCCATGGACTTCCGAAGT 178
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTGGTCTTTTAGGGTTAAGAATTTGGGATTGTGAATTGAAAAGCCATGGACTTCCGAAGA 180
Query 179 AGAAGGGTTCAATTTCTACTCTTTGCTATTGGATTAATCGCTCTTAGTATGACAGCTGAA 238
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGAAGGGTTCAATTTATTCTCTTTGCTATCGGATTAATCGCTCTTAGTATGACAGCTGAA 240
Query 239 AAATGTCGGGAACTTGTTGGACAAGAAGCTGCATCAAAGAGTGGACAGTTTACATTCTTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AAATGTCGGGAACTTGTTGGACAAGAAGCTGCATCAAAGAGTGGACAGTTTACGTTCTTG 300
Query 299 AATTGCTTTGATATGAGTTCAGGGACTTTAGCATGTGCAGTTAAAGAAGGTGTGAAGCTT 358
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 301 AATTGTTTTGATATGAGTTCAGGAACTTTAGCCTGTGCAGTTAAAGAAGGTGTGAAGCTT 360
Query 359 TATTTCTACAATATAAGATCTATTCATGTAGAGAAGGCCAGGAACGTCGCTATTGAGAAA 418
|||||||| |||||||| ||||||||||||||||| ||| |||| || ||||| ||||||
Sbjct 361 TATTTCTATAATATAAGGTCTATTCATGTAGAGAAAGCCCGGAATGTTGCTATCGAGAAA 420
Query 419 GCCTTGCACGAGGCATTGGATAA-TGGCATGCTTGCAAAAGAAGCAGCCAAAGAGGGGCA 477
|||||||| ||||| |||| ||| |||||||| ||||||||||||||| ||||||| |||
Sbjct 421 GCCTTGCATGAGGCGTTGG-TAAATGGCATGCCTGCAAAAGAAGCAGCTAAAGAGGTGCA 479
Query 478 GAGAGCAGGTGAAAAAGCGGCTAAACTGGCGACGC-GGCAAGCGAAACGTATCATAGGAC 536
|||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||
Sbjct 480 GAGAGCAGGTGAAAAAGCGGCTAAACTGGCGA-GCAGGCAGGCTAAACGTATCATAGGAC 538
Query 537 CAATAGTAGCAGCTGGGTGGGATTTCTTTGAAGCGCTTTACTTTGGAGGGACTTTAACTG 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAATAGTAGCAGCCGGGTGGGATTTCTTTGAAGCGCTTTACTTTGGAGGGACTTTAACTG 598
Query 597 AAGGGTTCTTGCGTGGTACTGGAACTATGGTTGGTGCTTACTCAGGAGGGTACGTAGGTG 656
||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 599 AAGGGTTCTTGCGCGGTTCTGGAACTATGGTTGGTGCTTACTCAGGAGGGTATGTGGGTG 658
Query 657 AGCAGAGATTTGGTAGATTCGGTTATCTTGTGGGAAGTACCTTAGGGAATTGGGTTGGCG 716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 AGCAGAGATTTGGTAGATTCGGTTATCTTGTGGGAAGTACCTTGGGGAATTGGGTTGGCG 718
Query 717 CACGGGTTGGACTTATGGTTTATGATGTTGTGAATGGGGTAAACTTCTTC-TATGAGACT 775
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 719 CACGGGTTGGACTGATGGTTTATGATGTTGTGAATGGGGTAAACTTCTTCCT-TGAGACT 777
Query 776 TATCAATCTGGAGAAATATATGAGGATCAGTCTACAAATGAAAGTCCCGAGGACCGGTCT 835
||||||||||||||||| ||| |||||||||||||| |||||||||| ||||| | ||||
Sbjct 778 TATCAATCTGGAGAAATTTATAAGGATCAGTCTACATATGAAAGTCCTGAGGATCAGTCT 837
Query 836 ACATATGAAAGTCGTGAGGACCCGTCTACATATGAAAGTCCTGAGGA-CAGGTCTACTTA 894
|||| |||||||| | |||| | |||||||||||||||||||||||| ||| ||||| ||
Sbjct 838 ACATTTGAAAGTCCTAAGGATCAGTCTACATATGAAAGTCCTGAGGATCAG-TCTACATA 896
Query 895 TGAAATTCGTGAGGA 909
||||| || ||||||
Sbjct 897 TGAAAGTCCTGAGGA 911
Score = 346 bits (187), Expect = 2e-94
Identities = 345/415 (83%), Gaps = 35/415 (8%)
Strand=Plus/Plus
Query 852 AGGACCCGTCTACATATGAAAGTCCTGAGGA-CAGGTCTAC-TTATGAAATTCGTGAGGA 909
|||| | |||||||||||||||||||||||| || |||||| || ||||| || | ||||
Sbjct 800 AGGATCAGTCTACATATGAAAGTCCTGAGGATCA-GTCTACATT-TGAAAGTCCTAAGGA 857
Query 910 CCAGTCTACATATGAAAGTCCTGAGGAGGATCAGTCTACATATGAAACTTCAAATTAT-G 968
||||||||||||||||||||| |||||||||||||||||||||| | | | || |
Sbjct 858 TCAGTCTACATATGAAAGTCCT---GAGGATCAGTCTACATATGAAAGTCCTGAGGATCG 914
Query 969 AGCTCTAGAT-AGTTCCTACA-ATG-AA--TGGATTTATG-GAT-T-G--GAAAATGACC 1018
|| | || || | ||||| ||| || | | | | | | | | | ||||||||||
Sbjct 915 TCCTGAAAATCAG-T-CTACATATGAAACTTCAAGTGACGAGCTCTAGATGAAAATGACC 972
Query 1019 TAAGAAACTTTTGAAGACAAGTCAGAAAGGAATTATTGGAAAGCTTTAGAAGATTTTGGA 1078
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct 973 TAAGAAACCTTTGAAGACAAGTCAGAAAGG-A--ATTGGAAAGCTTTAGAAGATTTCGGA 1029
Query 1079 ATATTTCTTTCCAATACATTTGACATAGTTGTTGTATAGACTAAAAGAGTTTCGACAAGA 1138
|||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 1030 ATATTTCTTTCCGATATATTTGACATA--T-TTGTATAGACTAAAAGAGTTTCGACAAGA 1086
Query 1139 -CGAATTCGTTGATGGATGCCCCAAATATTTCAGTTGCATTTGTTTTATTGTACAAATTG 1197
| |||| |||||||||||||| |||||||| |||| |||||||||||||||||||| |
Sbjct 1087 TC-AATTTGTTGATGGATGCCCAAAATATTTAAGTTAAATTTGTTTTATTGTACAAATCG 1145
Query 1198 TTTGTTTCAAATTA-------CTTTTTATGTTGGTTGTCTTGAATGTTTAAATGT 1245
||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1146 GTTGTTTCAAATTAGTTTTTACTTTTTATGTTGGTTTTCTTGAATGTTTAAATGT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5