BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56440.2
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474807 jgi|Araly1|474807|fgenesh2_kg.1__4761__AT1G56440.1 1107 0.0
> Ahg474807 jgi|Araly1|474807|fgenesh2_kg.1__4761__AT1G56440.1
Length=1612
Score = 1107 bits (599), Expect = 0.0
Identities = 690/734 (94%), Gaps = 6/734 (1%)
Strand=Plus/Plus
Query 955 AGGAGAAAAGCAAAGAAGGTTCCATGAAAATTCCAGCTATCACGGAAATTCTAGACAGCA 1014
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 809 AGGGGAAAAGCAAAGAAGGTTCCAAGAAAATTCCAGCTATCACGGAAAATCTAGACAGCA 868
Query 1015 AGAAAGTGACGCCTGGAAG-CCAAAGTTATGAAAAGGAGGCGAAGCCTTCTGACAGAAAT 1073
|||||||||||||| | || |||||||||||||||||||| ||| ||||||||||||||
Sbjct 869 AGAAAGTGACGCCTAG-AGTCCAAAGTTATGAAAAGGAGGTTAAGTCTTCTGACAGAAAT 927
Query 1074 GGTACTCAGCCTTCTGGACCGGAAAACCAGGTTTCTAAACAGCTGGAACTAAAGCCATCA 1133
||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 928 GGTACTCAGCCTTCTAGACAGGGAAACCAGGTTTCTAAAAAGCTGGAACTAAAGCCATCA 987
Query 1134 GTACAAGAGCTTGCTGCTCATGCAGCGTCACTTGCGATGACTGAAGCTTCTAAAAACATT 1193
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 988 GTACAAGAGCTTGCTGCCCATGCAGCATCACTTGCGATGTCTGAAGCTTCTAAAAACATT 1047
Query 1194 AAAACCCCAAAATCTGCTTACGAATTTGAGAACTCTTGGCGGAGTTTTTCCGGCGACAGT 1253
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1048 AAAGCCCCAAAATCTGCTTACGAATTTGAGAACTCTTGGCGGAGTTTTTCTGGCGACCTT 1107
Query 1254 GCCCTACGAAGCCAATTGTTGAAGGTCACGA-CTCCGAGCTCTTTACCTCAGATTTTCAA 1312
|| |||| || ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1108 GCTCTACAAACCCAATTGTTGAAGGTCA-TATCTCCGAGCTCTTTACCTCAGATTTTCAA 1166
Query 1313 GAACGCCCTGACCTCTCCGGTGCTGGTTGACATAATCAAATGTGTAGCCTCATTCTTCAC 1372
||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1167 GAACGCCATGACTTCTCCGGTGCTGGTTGACATAATAAAATGTGTAGCCTCATTTTTCAC 1226
Query 1373 TGAAGACATGGATTTGGCAGTTAAATACATTGAGAACCTAACAAAGGTTCCTAGATTCAA 1432
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGAAGACATGGATTTGGCTGTTAAATACATTGAGAACCTAACAAAGGTTCCTAGATTCAA 1286
Query 1433 CATGCTCGTCATGTGCCTTACCTCAACCGAGAAAAACGAGCTACTGAAGATATGGGAAGA 1492
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1287 CATGCTCGTCATGTGCCTTACCTCAACCGAGAAAAACGAGCTTCTGAAGCTATGGGAAGA 1346
Query 1493 TGTTTTCTGCAATAAAGCAACCCCAATGGAGTATGCAGAGGTCTTAGACAAACTAAGGTC 1552
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1347 TGTTTTCTGCAATAAAGCAACCCCAATGGAGTATGCAGAGGTCTTAGACAAACTGAGGTC 1406
Query 1553 AAGATACTGCCTTAAACAGTAACTTAGTAGATGGCTCTTTTTAGTAGTGTACATGGTGAA 1612
|||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct 1407 AAGATACTGCCTCAAACAGTAACTTAGGAGATGGCTCTTTTTAGCAGTGTGCATGGTGAA 1466
Query 1613 GATTTTGCACACCCAGTAGGCCAGTAAGCATTT-TGGATGATAATGAACCAGTTTTTTGT 1671
||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| ||
Sbjct 1467 GATTTTGCACACCCAGTAGGCCAGTAAGCATTTCTCAATGATCATGAAACAGTTTTT-GT 1525
Query 1672 TCATATATTTACCG 1685
||||||||||||||
Sbjct 1526 TCATATATTTACCG 1539
Score = 1103 bits (597), Expect = 0.0
Identities = 752/825 (91%), Gaps = 18/825 (2%)
Strand=Plus/Plus
Query 81 TCTCTCAGAATGGCTAGGTCACCGAGCAAACACGGCCGCGATCAAACTCAGGATTTCCAG 140
|||||||| ||| |||||||||||| |||||||||||||||||||| | | |||
Sbjct 1 TCTCTCAGTATGTCTAGGTCACCGAACAAACACGGCCGCGATCAAA--C------T-CAG 51
Query 141 GGATTTTTCAATGACTTGCAGGATTGGGAACTCTCATTGAAGGATAAAGACAAGAAGATT 200
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 52 GGATTTTTGAATGACTTGCAGGATTGGGAACTTTCATTGAAGGATAAGGACAAGAAAATC 111
Query 201 AAGCAACAAC-CTGCTAATTCGTCGAATCCGAGTAGTGAGACGTTCAGACCAAGTGGGTC 259
||||| |||| | | |||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 112 AAGCAGCAACGC-GATAATTCATCGAATCCGAGTAGTGAGAATTTCAGACCAAGTGGTTC 170
Query 260 AGGGAAATATGACTTTGCT-AAAAAGTATCGTTCCATTAGGGATTTGTCGAGTAGTTTGA 318
|||| ||||||| |||| | ||||| |||| |||| |||| |||||||||||||||||||
Sbjct 171 AGGGCAATATGATTTTG-TAAAAAATTATCATTCCGTTAGAGATTTGTCGAGTAGTTTGA 229
Query 319 TTGGAGAAAGTCTATTGGATTCTAGTTCAGAGAAGGAGCAGGGTAATGAATTCTTCAAGC 378
| ||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 230 TCGGAGAAAGTCTCTTGGATTCTAATTCAGAGAAGGAGCAGGGAAATGAATTTTTCAAGC 289
Query 379 AGAAGAAGTTCAATGAGGCGATTGATTGTTACTCTCGGAGCATTGCTTTATCGCCAAATG 438
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 290 AGAAGAAGTTTAATGAGGCGATTGATTGTTACTCTCGAAGCATTGCTTTATCACCAAATG 349
Query 439 CT-GTGACTTATGCAAATCGAGCAATGGCTTACCTTAAAATCAAAAGATATCGAGAGGCT 497
|| || ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 350 CTATTG-CTTATGCAAATCGAGCAATGGCTTATCTTAAGATCAAAAGATATCGAGAAGCG 408
Query 498 GAGGTTGACTGCACAGAAGCTTTAAATCTGGATGATCGATATATAAAAGCTTACTCACGC 557
||||| |||||||||||||| ||||||||||||||||| || |||||||| |||||||||
Sbjct 409 GAGGTAGACTGCACAGAAGCCTTAAATCTGGATGATCGTTACATAAAAGCATACTCACGC 468
Query 558 CGAGCAACAGCAAGAAAAGAACTCGGCATGATTAAAGAAGCCAAAGAAGATGCTGAGTTT 617
||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 469 CGAGCAACAGCCAGAAAAGAACTTGACATGATTAAAGAAGCCAAGGAAGATGCTGAGTTT 528
Query 618 GCCTTAAGATTGGAGCCTGAGAGCCAGGAACTTAAGAAGCAATATGCCGATATCAAATCT 677
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 529 GCTTTAAGATTGGAGCCTGAGAGCCAGGAACTTAAGAAGCAATATGCCGACATCAAATCT 588
Query 678 TTGCTCGAGAAAGAAATCATTGAGAAAGCCACTGGAGCAATGCAAAGCACTGCACAAGAA 737
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 TTGCTTGAGAAAGAAATCATTGAGAAAGCCACTGGAGCTATGCAAAGCACTGCACAAGAA 648
Query 738 TTACTCAAAACATCAGGTTTAGATAAGAAAATACAAAAGCCAAAGACAGAAATGACTTCA 797
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 649 TTACTCAAAACATCAGGTTTAGATAAGAAAATACAAAAGCCAAATACAGA---GACTTTG 705
Query 798 AAGCCAGTGACCCTAGTGGCCAAAACGAACAGGGATATTGTTCAGCCTGTTCTAGGTAGC 857
||||| |||||||||| ||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 706 AAGCCGGTGACCCTAGGGGCCAAAACGAACAGGGATATGGGTCAGCCTGTTCCAGGTAGC 765
Query 858 AATGAAAGTTCGGGAAAGAAGCTCATTGAAAATATACAACCTGAG 902
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AAGGAAAGTTCGGGAAAGAAGCTCATTGAAAATATACAACCTGAG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5