BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56450.1 Length=1042 Score E Sequences producing significant alignments: (Bits) Value Ahg474808 jgi|Araly1|474808|fgenesh2_kg.1__4762__AT1G56450.1 1528 0.0 Ahg334205 jgi|Araly1|334205|fgenesh1_pg.C_scaffold_1000770 782 0.0 > Ahg474808 jgi|Araly1|474808|fgenesh2_kg.1__4762__AT1G56450.1 Length=988 Score = 1528 bits (827), Expect = 0.0 Identities = 926/973 (95%), Gaps = 9/973 (1%) Strand=Plus/Plus Query 75 ATTTTTCGAGAATATGACGACTTTTTCTGTTCCGATTGATAACGGAGATTCTATGAAGAT 134 |||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||| Sbjct 20 ATTTTTCGAGAAGATGACGACTCTTACTGTTCCGATTGATAACGGAGATTCTGTGAAGAT 79 Query 135 CGCAGAAGAAGAATCACAAAGAACACTGTACCCATATGTTACTGGAACTTCAATTGTTGC 194 |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 80 CGCAGAAGAAGAATCACAAAGAACTCTGTACCCTTATGTAACTGGAACTTCAATTGTTGC 139 Query 195 AATCAAGTACAAAGATGGGGTTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCAAC 254 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 140 AATCAAGTACAAAGATGGGGTTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCCAC 199 Query 255 CTTAAGATACAAGAACATCGAGAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGC 314 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 200 CTTAAGATACAAGAACATTGAAAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGC 259 Query 315 CAGCGGAGAAATCAGCGACTTTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAA 374 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 CAGCGGAGAAATCAGTGACTTTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAA 319 Query 375 TGATAACATGTGGGATGATGGTAACTCTTTGGGACCAAAAGAGATTCACAACTATCTGAC 434 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 320 TGATAACATGTGGGATGATGGTAATTCTTTGGGACCAAAAGAGATTCACAACTATCTGAC 379 Query 435 CCGTGTGATGTACAACCGTCGCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGG 494 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 380 CCGTGTGATGTACAACCGTCGCAACAAGTTTGACCCTCTGTGGAACACTCTTGTCCTTGG 439 Query 495 AGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGA 554 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 440 AGGCGTCAAAAACGGGAAGAGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGA 499 Query 555 GGACGATCATGTTGCCACTGGATTTGGAAACCACCTTGCTAGGCCAATTCTTCGTGATGA 614 |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 500 GGACGATCATGTCGCCACCGGATTTGGAAACCACCTCGCTAGGCCAATTCTTCGTGATGA 559 Query 615 GTGGCATGCAGACCTGAGTTTTGAAGATGGTGTCAAGCTACTTGAGAAATGTATGCGTGT 674 ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 560 GTGGCATGCGGACCTGAGTTTTGAAGACGGTGTCAAGCTCCTTGAGAAATGTATGCGCGT 619 Query 675 GCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGA 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 GCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGA 679 Query 735 GGGCGTGACGGTCTCACAGCCATACTCATTGAAGACATACTGGGAATTCTCGTCATTCCA 794 || ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 680 AGGTGTGACTGTCTCACAGCCATACTCATTGAAGACATTCTGGGAATTCTCGTCATTCCA 739 Query 795 CAACCCAACTGCTGGTGCTGCAGGCTCCTGGTAAGAAGCCAAGCAACCACATCG-G-CTG 852 |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| Sbjct 740 CAACCCAACTGCTGGTGCTGAAGGCTCCTGGTAAGAAGCCAAGCAACCACATAATGTCTG 799 Query 853 GCGATCTTTTAAGGAAGCTTTTATTTTATTTTATGTGATGTTGTTAAACACTTTGTACTG 912 | ||||||| |||||||||||| || ||||||||||||||||||||| ||||||||||| Sbjct 800 GAGATCTTTCAAGGAAGCTTTT-TT--ATTTTATGTGATGTTGTTAAAAACTTTGTACTG 856 Query 913 TAGTTGTTTTACTATTAAACTTGGTGGTTTCTTTC-TGACAGTCCAGAGTTTAGATCAAT 971 |||||| ||||||||||||| |||||||||||| | ||||| |||||||||||||||||| Sbjct 857 TAGTTGGTTTACTATTAAACATGGTGGTTTCTT-CATGACATTCCAGAGTTTAGATCAAT 915 Query 972 GAGGATTTATAAAAAGTACTGGATATCTTTGGGTAGTAATCCATA--CCTTTGTTCATTG 1029 ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct 916 GAGGATTTATAAAAAGTTCTGGATATCTTTGGTTAGTAATCCATAAACCTTTGTTCATTG 975 Query 1030 TTGATCGTTCTCC 1042 ||||||||||||| Sbjct 976 TTGATCGTTCTCC 988 > Ahg334205 jgi|Araly1|334205|fgenesh1_pg.C_scaffold_1000770 Length=738 Score = 782 bits (423), Expect = 0.0 Identities = 635/738 (86%), Gaps = 12/738 (2%) Strand=Plus/Plus Query 98 TTTC-TG-TTCCGATTGATAACGGAGATTCTA-TGAAGATCGCAGAAGAAGAATCACAAA 154 |||| || |||||||||| ||| |||| | | |||||| ||| || | || || |||| Sbjct 6 TTTCATGATTCCGATTGAGAAC-GAGAATGGAGTGAAGAACGCTGAGGCTGATTCCCAAA 64 Query 155 GAACACTGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGGGG 214 ||||| ||||||| |||||||||||||| ||| | || || |||||||||||||||||| Sbjct 65 GAACATTGTACCCGTATGTTACTGGAACCTCAGTGGTGGCTATCAAGTACAAAGATGGGA 124 Query 215 TTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCAACCTTAAGATACAAGAACATCG 274 |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 125 TTTTAATGGCTTCTGATATGGGAGGTTCATATGGATCCACCTTAAGGTACAAGAACATTG 184 Query 275 AGAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGCCAGCGGAGAAATCAGCGACT 334 ||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 185 AGAGAATGCAGGCTATTGGTAAGCATTCTCTTCTTGGTGCCAGTGGGGAAATCAGCGACT 244 Query 335 TTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAATGATAACATGTGGGATGATG 394 | || || ||| | ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 245 TCCAAGAAATTTTGCGTTATCTTGACGAGCTCATGCTGAATGATAACATGTGGGATGATG 304 Query 395 GTAACTCTTTGGGACCAAAAGAGATTCACAACTATCTGACCCGTGTGATGTACAACCGTC 454 |||| || ||||| || |||||| |||| |||||||||||||| || ||||| || || | Sbjct 305 GTAATTCCTTGGGGCCGAAAGAGGTTCATAACTATCTGACCCGAGTTATGTATAATCGCC 364 Query 455 GCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAA-A 513 | |||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| | | Sbjct 365 GGAACAAGTTCAACCCTTTGTGGAACACTCTTGTCCTTGGAGGTGTCAAAAATGGGGAGA 424 Query 514 AGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACT 573 ||| ||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||| Sbjct 425 AGT-ACCTTGGGATGGTCTCAATGATTGGTGTTAGTTTTGAGGACAACCATGTTGCCACT 483 Query 574 GGATTTGGAAACCACCTTGCTAGGCCAATTCTTCGTGATGAGTGGCATGCAG-ACCTGAG 632 || ||||| | ||||| |||||||| |||||||| || || |||| || || ||||||| Sbjct 484 GGTTTTGGGAGTCACCTAGCTAGGCCCATTCTTCGCGACGAATGGCGTG-AGGACCTGAG 542 Query 633 TTTTGAAGATGGTGTCAAGCTACTTGAGAAATGTATGCGTGTGCTTCTTTACCGTGACAG 692 ||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 543 TTTTGAAGAAGGTGTCAAACTACTGGAGAAATGTATGCGTGTACTTCTTTACCGTGACAG 602 Query 693 ATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACA 752 ||||||||| ||||| ||||||||||| ||||| || || || |||||||| ||||| | Sbjct 603 ATCTGCTATCAACAAACTTCAGATAGCAAAGATGACAGAGGAAGGCGTGACTGTCTCTGA 662 Query 753 GCCATACTCA-TTGAAGACATACTGGGAATTCTCGTCATTC-CACAACCCAACTGCTGGT 810 ||||||||| || ||||||| |||||| ||| | | ||| || |||||||| | |||| Sbjct 663 GCCATACTCGCTT-AAGACATTCTGGGATTTCAAGGCGTTCGCA-AACCCAACAGTTGGT 720 Query 811 GCTGCAGGCTCCTGGTAA 828 || | ||||||||||||| Sbjct 721 GCAGAAGGCTCCTGGTAA 738 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38771006589 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5