BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56450.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474808 jgi|Araly1|474808|fgenesh2_kg.1__4762__AT1G56450.1 1528 0.0
Ahg334205 jgi|Araly1|334205|fgenesh1_pg.C_scaffold_1000770 782 0.0
> Ahg474808 jgi|Araly1|474808|fgenesh2_kg.1__4762__AT1G56450.1
Length=988
Score = 1528 bits (827), Expect = 0.0
Identities = 926/973 (95%), Gaps = 9/973 (1%)
Strand=Plus/Plus
Query 75 ATTTTTCGAGAATATGACGACTTTTTCTGTTCCGATTGATAACGGAGATTCTATGAAGAT 134
|||||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 20 ATTTTTCGAGAAGATGACGACTCTTACTGTTCCGATTGATAACGGAGATTCTGTGAAGAT 79
Query 135 CGCAGAAGAAGAATCACAAAGAACACTGTACCCATATGTTACTGGAACTTCAATTGTTGC 194
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 80 CGCAGAAGAAGAATCACAAAGAACTCTGTACCCTTATGTAACTGGAACTTCAATTGTTGC 139
Query 195 AATCAAGTACAAAGATGGGGTTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCAAC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 140 AATCAAGTACAAAGATGGGGTTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCCAC 199
Query 255 CTTAAGATACAAGAACATCGAGAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGC 314
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 200 CTTAAGATACAAGAACATTGAAAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGC 259
Query 315 CAGCGGAGAAATCAGCGACTTTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAA 374
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CAGCGGAGAAATCAGTGACTTTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAA 319
Query 375 TGATAACATGTGGGATGATGGTAACTCTTTGGGACCAAAAGAGATTCACAACTATCTGAC 434
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 320 TGATAACATGTGGGATGATGGTAATTCTTTGGGACCAAAAGAGATTCACAACTATCTGAC 379
Query 435 CCGTGTGATGTACAACCGTCGCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGG 494
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 380 CCGTGTGATGTACAACCGTCGCAACAAGTTTGACCCTCTGTGGAACACTCTTGTCCTTGG 439
Query 495 AGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGA 554
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AGGCGTCAAAAACGGGAAGAGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGA 499
Query 555 GGACGATCATGTTGCCACTGGATTTGGAAACCACCTTGCTAGGCCAATTCTTCGTGATGA 614
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 500 GGACGATCATGTCGCCACCGGATTTGGAAACCACCTCGCTAGGCCAATTCTTCGTGATGA 559
Query 615 GTGGCATGCAGACCTGAGTTTTGAAGATGGTGTCAAGCTACTTGAGAAATGTATGCGTGT 674
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 560 GTGGCATGCGGACCTGAGTTTTGAAGACGGTGTCAAGCTCCTTGAGAAATGTATGCGCGT 619
Query 675 GCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGA 679
Query 735 GGGCGTGACGGTCTCACAGCCATACTCATTGAAGACATACTGGGAATTCTCGTCATTCCA 794
|| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 680 AGGTGTGACTGTCTCACAGCCATACTCATTGAAGACATTCTGGGAATTCTCGTCATTCCA 739
Query 795 CAACCCAACTGCTGGTGCTGCAGGCTCCTGGTAAGAAGCCAAGCAACCACATCG-G-CTG 852
|||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 740 CAACCCAACTGCTGGTGCTGAAGGCTCCTGGTAAGAAGCCAAGCAACCACATAATGTCTG 799
Query 853 GCGATCTTTTAAGGAAGCTTTTATTTTATTTTATGTGATGTTGTTAAACACTTTGTACTG 912
| ||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 800 GAGATCTTTCAAGGAAGCTTTT-TT--ATTTTATGTGATGTTGTTAAAAACTTTGTACTG 856
Query 913 TAGTTGTTTTACTATTAAACTTGGTGGTTTCTTTC-TGACAGTCCAGAGTTTAGATCAAT 971
|||||| ||||||||||||| |||||||||||| | ||||| ||||||||||||||||||
Sbjct 857 TAGTTGGTTTACTATTAAACATGGTGGTTTCTT-CATGACATTCCAGAGTTTAGATCAAT 915
Query 972 GAGGATTTATAAAAAGTACTGGATATCTTTGGGTAGTAATCCATA--CCTTTGTTCATTG 1029
||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 916 GAGGATTTATAAAAAGTTCTGGATATCTTTGGTTAGTAATCCATAAACCTTTGTTCATTG 975
Query 1030 TTGATCGTTCTCC 1042
|||||||||||||
Sbjct 976 TTGATCGTTCTCC 988
> Ahg334205 jgi|Araly1|334205|fgenesh1_pg.C_scaffold_1000770
Length=738
Score = 782 bits (423), Expect = 0.0
Identities = 635/738 (86%), Gaps = 12/738 (2%)
Strand=Plus/Plus
Query 98 TTTC-TG-TTCCGATTGATAACGGAGATTCTA-TGAAGATCGCAGAAGAAGAATCACAAA 154
|||| || |||||||||| ||| |||| | | |||||| ||| || | || || ||||
Sbjct 6 TTTCATGATTCCGATTGAGAAC-GAGAATGGAGTGAAGAACGCTGAGGCTGATTCCCAAA 64
Query 155 GAACACTGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGGGG 214
||||| ||||||| |||||||||||||| ||| | || || ||||||||||||||||||
Sbjct 65 GAACATTGTACCCGTATGTTACTGGAACCTCAGTGGTGGCTATCAAGTACAAAGATGGGA 124
Query 215 TTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCAACCTTAAGATACAAGAACATCG 274
|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 125 TTTTAATGGCTTCTGATATGGGAGGTTCATATGGATCCACCTTAAGGTACAAGAACATTG 184
Query 275 AGAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGCCAGCGGAGAAATCAGCGACT 334
||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 185 AGAGAATGCAGGCTATTGGTAAGCATTCTCTTCTTGGTGCCAGTGGGGAAATCAGCGACT 244
Query 335 TTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAATGATAACATGTGGGATGATG 394
| || || ||| | ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 245 TCCAAGAAATTTTGCGTTATCTTGACGAGCTCATGCTGAATGATAACATGTGGGATGATG 304
Query 395 GTAACTCTTTGGGACCAAAAGAGATTCACAACTATCTGACCCGTGTGATGTACAACCGTC 454
|||| || ||||| || |||||| |||| |||||||||||||| || ||||| || || |
Sbjct 305 GTAATTCCTTGGGGCCGAAAGAGGTTCATAACTATCTGACCCGAGTTATGTATAATCGCC 364
Query 455 GCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAA-A 513
| |||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| | |
Sbjct 365 GGAACAAGTTCAACCCTTTGTGGAACACTCTTGTCCTTGGAGGTGTCAAAAATGGGGAGA 424
Query 514 AGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACT 573
||| ||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 425 AGT-ACCTTGGGATGGTCTCAATGATTGGTGTTAGTTTTGAGGACAACCATGTTGCCACT 483
Query 574 GGATTTGGAAACCACCTTGCTAGGCCAATTCTTCGTGATGAGTGGCATGCAG-ACCTGAG 632
|| ||||| | ||||| |||||||| |||||||| || || |||| || || |||||||
Sbjct 484 GGTTTTGGGAGTCACCTAGCTAGGCCCATTCTTCGCGACGAATGGCGTG-AGGACCTGAG 542
Query 633 TTTTGAAGATGGTGTCAAGCTACTTGAGAAATGTATGCGTGTGCTTCTTTACCGTGACAG 692
||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 543 TTTTGAAGAAGGTGTCAAACTACTGGAGAAATGTATGCGTGTACTTCTTTACCGTGACAG 602
Query 693 ATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACA 752
||||||||| ||||| ||||||||||| ||||| || || || |||||||| ||||| |
Sbjct 603 ATCTGCTATCAACAAACTTCAGATAGCAAAGATGACAGAGGAAGGCGTGACTGTCTCTGA 662
Query 753 GCCATACTCA-TTGAAGACATACTGGGAATTCTCGTCATTC-CACAACCCAACTGCTGGT 810
||||||||| || ||||||| |||||| ||| | | ||| || |||||||| | ||||
Sbjct 663 GCCATACTCGCTT-AAGACATTCTGGGATTTCAAGGCGTTCGCA-AACCCAACAGTTGGT 720
Query 811 GCTGCAGGCTCCTGGTAA 828
|| | |||||||||||||
Sbjct 721 GCAGAAGGCTCCTGGTAA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5