BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56480.1
Length=2552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924339 jgi|Araly1|924339|scaffold_105620.1 388 8e-107
Ahg924341 jgi|Araly1|924341|scaffold_105622.1 274 2e-72
> Ahg924339 jgi|Araly1|924339|scaffold_105620.1
Length=1100
Score = 388 bits (210), Expect = 8e-107
Identities = 258/281 (92%), Gaps = 3/281 (1%)
Strand=Plus/Plus
Query 1812 AATTGTGTGATAAACGTTAAAGCAGTGACATCAAAGCGCATGATGAAGAAAGGAGGAATG 1871
|||||||||||| ||||||||| ||||||||||||| |||| |||| |||||||||||
Sbjct 631 AATTGTGTGATATACGTTAAAGGAGTGACATCAAAGAAAATGACGAAGGAAGGAGGAATG 690
Query 1872 TTAGAAGGGTTCATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTG 1931
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TTAGAAGGATACATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTG 750
Query 1932 TTCAAACATTGTGTGATTCAAGGAGATGGTAAGGCATATTTAGGAAGAGCTTACCGAAAC 1991
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTCAAAAATTGTTTGATTCAAGGAGATGGTAAGGCATATTTAGGAAGAGCTTACCGAAAC 810
Query 1992 TACTCTAGAGTTGTCTTCTATGAAACCACCATGTCCAATGTTGTCGTACGTAAAGGATGG 2051
|||||||||||||| ||||||| ||||| |||||||||||||||||||| | |||||||
Sbjct 811 TACTCTAGAGTTGTTTTCTATGGAACCAACATGTCCAATGTTGTCGTACCTCGAGGATGG 870
Query 2052 GATGCTTGGGAATATAGCGACCAAGTGTACGTAATATTTAC 2092
||||||||||| |||| |||||||||| | ||| ||||||
Sbjct 871 GATGCTTGGGATTATAACGACCAAGTGCA--TAA-ATTTAC 908
Score = 370 bits (200), Expect = 3e-101
Identities = 222/233 (95%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 1 ATGAAATCTCTTAAAAATATTTTGGCTCTCTCATTTTTGTATTTGATGGCTACGACATCA 60
|||||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 22 ATGAAATCTCTTAAAACTATTTTGGCTCTCTCATTTATGTATTTTACGGCTACGACATCA 81
Query 61 CTTGTATCTTCAGATGGTTTGGAACCGAAAGATTTCTACAAAGATATAGCAAAGACATTG 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CTTGTATCTTCTTATGGTTTGGAACCGAAAGATTTCTACAAAGATATAGCAAAGACATTG 141
Query 121 GTGGTTAGTCATAAGGGTAAAGGTGATTTCAAAACCATCCAAGCAGCCATGGACTCTATT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GTGGTTAGTCATAATGGTAAAGGTGATTTCAAAACCATCCAAGCAGCCATGGACTCTATT 201
Query 181 CCTTCTGGTAACAAAAATTGGGTTAAGATTTATCTTAGACATGGAATCTACAA 233
|||||| |||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 202 CCTTCTAGTAACAAAAATTGGATTAAGATTTATCTTAAACATGGAACCTACAA 254
Score = 320 bits (173), Expect = 3e-86
Identities = 204/219 (93%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 1325 AGAATACGAATACAAGGATGACACCAGTTATACCGTATAAAGCAATAAAGGTAGCTCCAT 1384
|||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||
Sbjct 413 AGAATACGAATACAAGGATGACACCAATAATACCATATAAAGCGATAAAGGTAGCTCCAT 472
Query 1385 CAGTTATACTAGCTGCGGACAAGGCGTGGTTCTATGGCTGCAGCTTCATCAGTGTCCAAG 1444
|| ||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 473 CAATTATATTAGCCGCGGACAAGGCATGGTTCTATGGCTGCACCTTCATCAGTGTCCAAG 532
Query 1445 ACACAGTCGCTGATTTACTCGGCCGCCACTACTTCCA-AAATTGTAACATTGTAGGAGCC 1503
|||||||||||||||||||||||||||| ||||| | ||||||| |||| |||||||||
Sbjct 533 ACACAGTCGCTGATTTACTCGGCCGCCATTACTT-TATAAATTGTTACATCGTAGGAGCC 591
Query 1504 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 1542
|||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 630
Score = 285 bits (154), Expect = 1e-75
Identities = 171/179 (96%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 2187 ATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAGTAAGAAAGGAAGAG 2246
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 ATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAATAAGAAAGGAAGAG 958
Query 2247 TTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTGAATCT-CTTATAGAACCAAAAAAT 2305
||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||
Sbjct 959 TTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTAAAT-TACTTATTGAACCCAAAAAT 1017
Query 2306 TTCATTGATGAAGATGGTTGGATAGCCACTCTTCCTTCTTCTCTCGTCTCTTTATATTT 2364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1018 TTCATTGATGAAGATGGTTGGATGGCCACTCTTCCTTCTTCTCTCGTCTCTTTATTTTT 1076
Score = 268 bits (145), Expect = 1e-70
Identities = 155/160 (97%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 323 CGAAAAGATAGTGATTCCGAAGGAGAAGCAAAAGATAATAATGCAAGGAAACAATGCATC 382
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 255 CGAAAAGATAGTAATTCCGAAGGAGAAACAAAAGATAATAATGCAAGGAAACAATGCATC 314
Query 383 AAAAGTGATAATTCAATATAATGATGCAGGACTAGCCAATTCGAGTGGTCCTTTAAGAGT 442
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 315 AAAAGTGATAATTCAATATAATGATGCAGGACTAGCCAATACGAGTGGTCCTATAAGAGT 374
Query 443 AGACGCTGAATACTTCGTCGCTATCAACATTACTTTCAAG 482
|||||| |||||||||||||||||||||||||||||||||
Sbjct 375 AGACGCCGAATACTTCGTCGCTATCAACATTACTTTCAAG 414
> Ahg924341 jgi|Araly1|924341|scaffold_105622.1
Length=1123
Score = 274 bits (148), Expect = 2e-72
Identities = 196/219 (89%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 1326 GAATACGAAT-ACAAGGATGACACCAGTTATACCGTATAAAGCA-ATAAAGGTAGCTCCA 1383
|||||| || |||| || ||||||| | |||| ||| ||| | ||||||||||| |||
Sbjct 413 GAATACTTATAACAA-GAGGACACCAATAATACTATATGAAG-ATATAAAGGTAGCCCCA 470
Query 1384 TCAGTTATACTAGCTGCGGACAAGGCGTGGTTCTATGGCTGCAGCTTCATCAGTGTCCAA 1443
|||||||||||| | ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 471 TCAGTTATACTAACGGCGGACAAGGCATGGTTCTATAGCTGCAGGTTCATCAGTGTCCAA 530
Query 1444 GACACAGTCGCTGATTTACTCGGCCGCCACTACTTCCAAAATTGTAACATTGTAGGAGCC 1503
|||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||
Sbjct 531 GACACAGTCGCTGATTTACTTGGCCGCCACTACTTCCAAAATTGTTACATCGAAGGAGCA 590
Query 1504 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 1542
|||||||||||||||||||||||||||||||||||||||
Sbjct 591 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 629
Score = 255 bits (138), Expect = 9e-67
Identities = 174/192 (91%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 2176 aaaaaTCAGGGATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAGTAA 2235
||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 899 AAAAAACAGGGATCATTTTACATATGCGGAGATAAACTGCATAGGGGAAGGAGCGAATAA 958
Query 2236 GAAAGGAAGAGTTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTGAATCTCTTATAGA 2295
|| ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 959 GAGCGGAAGAGTTCGATGGGAGAAGAATCTTACTGCTGAAGATGTTAAATCTCTTATTGA 1018
Query 2296 ACCAAAAAATTTCATTGATGAAGATGGTTGGATAGCCACTCTTCCTTCTTCTCTCGTCTC 2355
||| |||| ||||||| ||| |||||||||||| || |||||||||||||||||||||||
Sbjct 1019 ACCCAAAACTTTCATTAATGGAGATGGTTGGATGGCTACTCTTCCTTCTTCTCTCGTCTC 1078
Query 2356 TTTATATTTACC 2367
||||||||||||
Sbjct 1079 TTTATATTTACC 1090
Score = 231 bits (125), Expect = 1e-59
Identities = 208/247 (84%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 1821 ATAAACGTT-AAAGCAGTGACATCAAAGCGCATGATGAAGAAAGGAGGAATGTTAGAAGG 1879
||| ||||| |||| |||| || ||||| | ||| |||||| || | |||||||| |||
Sbjct 639 ATACACGTTAAAAG-AGTGGCAACAAAGGGAATGCTGAAGAGAGAACAAATGTTAGCAGG 697
Query 1880 GT-TCATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTGTTCAA-A 1937
| | |||||||| ||||||||||||||||| ||||||| ||| |||||||||||||| |
Sbjct 698 ATAT-ATAACCGCGCAAGGGAGGGAAAGCGAAGAAGACACAAGCGGATTTGTGTTCAATA 756
Query 1938 CATTGTGTGATTCAAGG-AGATGGTAAGGCA-TATTTAGGAAGAGCTTACCGAAACTACT 1995
|||| |||||| |||| || |||||||||| || || ||||||||||||||| ||||||
Sbjct 757 -ATTGCGTGATTAAAGGAAG-TGGTAAGGCATTA-TTGGGAAGAGCTTACCGAGACTACT 813
Query 1996 CTAGAGTTGTCTTCTATGAAACCACCATGTCCAATGTTGTCGTACGTAAAGGATGGGATG 2055
|||||||||||||||||||||| | |||||||||| || | | | || |||||||||||
Sbjct 814 CTAGAGTTGTCTTCTATGAAACTAGCATGTCCAATATTATTGAAAGTCGAGGATGGGATG 873
Query 2056 CTTGGGA 2062
|||||||
Sbjct 874 CTTGGGA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96215958870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5