BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56490.1
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924341 jgi|Araly1|924341|scaffold_105622.1 383 3e-105
Ahg924339 jgi|Araly1|924339|scaffold_105620.1 220 3e-56
> Ahg924341 jgi|Araly1|924341|scaffold_105622.1
Length=1123
Score = 383 bits (207), Expect = 3e-105
Identities = 247/266 (93%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 1710 AACTGCATTATACACGTTAAAAGAGTGGCAACAAAGGGAAAGGTGAAGAGAGAACAAATG 1769
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 630 AACTGCATTATACACGTTAAAAGAGTGGCAACAAAGGGAATGCTGAAGAGAGAACAAATG 689
Query 1770 TTAACAGGATACATAACCGCACAAGGGAGAGAAAGC-AAGGAAGACCCAAGTGGATTTGT 1828
||| ||||||| |||||||| |||||||| |||||| ||| ||||| |||| ||||||||
Sbjct 690 TTAGCAGGATATATAACCGCGCAAGGGAGGGAAAGCGAAG-AAGACACAAGCGGATTTGT 748
Query 1829 GTTCAATAATTGCGTGAT-AGAAGGAAGTGGTAGGGCATTATTGGGAAGAGCTTACCGAG 1887
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 749 GTTCAATAATTGCGTGATTA-AAGGAAGTGGTAAGGCATTATTGGGAAGAGCTTACCGAG 807
Query 1888 GCTACTCTAGAGTTGTCTTCTATAAAACCAGCATGTCCAATATTATTGAACGTCGAGGAT 1947
|||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 808 ACTACTCTAGAGTTGTCTTCTATGAAACTAGCATGTCCAATATTATTGAAAGTCGAGGAT 867
Query 1948 GGGATGCTTGGCATCGTCAAGGCCAA 1973
||||||||||| ||||| ||||||||
Sbjct 868 GGGATGCTTGGGATCGTGAAGGCCAA 893
Score = 320 bits (173), Expect = 3e-86
Identities = 214/234 (91%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCTCTTAAAAGTATATTGGCTCTCTCATTTTTGTTCTTAACGGCTTCGTCATCA 60
|||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
Sbjct 21 ATGAGATCTCTTAAAAGTTTATTGGCTTTCTCATTTTTGTTCTTAACGGCTTCGTCGTTA 80
Query 61 TTTGGCTCTTCTTATGGTTTAGAACCA-CATGATTTCGTTGAAGATGTAGTAAAAACACT 119
||| |||||||||| ||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 81 CTTGTCTCTTCTTATCGTTTAGAACCAACA-GATTTCGTTGAAGATGTAGAAAAAACACT 139
Query 120 GGTGGTTGGTCATGATGGTGCAACTGATTTCAAAACCATCCAAAAAGCCATCGACTCCAT 179
|||||||| |||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct 140 GGTGGTTGATCATGATGGTACAGCTAATTTCAAAACCATCCAAAAAGCCATCAACTCCAT 199
Query 180 TCCCTCTGGTAACAACCATTGGATTAAAATAATTATTAGTCCTGGAATCTACCA 233
||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 200 TCCCTCTGGTAACAATGATTGGATTAAAATAATTCTTAATCCTGGAATCTACCA 253
Score = 305 bits (165), Expect = 7e-82
Identities = 186/196 (95%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 2066 aaaaaaaaTCAGGGATCATTTTACATTTGCGGAGATAAACTGCAAAGGGGAAGGAGCGAA 2125
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 897 AAAAAAAA-CAGGGATCATTTTACATATGCGGAGATAAACTGCATAGGGGAAGGAGCGAA 955
Query 2126 TAAGAGAGGAAGAGTTCGATGGGAGAAGAATCTTAGTGCTGAAGATGTTAAATCTCTGAC 2185
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 956 TAAGAGCGGAAGAGTTCGATGGGAGAAGAATCTTACTGCTGAAGATGTTAAATCTCTTAT 1015
Query 2186 TGAACCCAAAACTTTCCTTAATGGAGATGGTTGGATGGGTACTCTTCCTTCTTCTCTCGT 2245
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1016 TGAACCCAAAACTTTCATTAATGGAGATGGTTGGATGGCTACTCTTCCTTCTTCTCTCGT 1075
Query 2246 CTCTTTATATTTGCCA 2261
|||||||||||| |||
Sbjct 1076 CTCTTTATATTTACCA 1091
Score = 215 bits (116), Expect = 1e-54
Identities = 144/158 (91%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 646 CGAAAAGATAGTGATTCCGAGGGAGAAGCAAAAGATAATAATGCAAGGAAGCGACGCATC 705
|||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 254 CGAAAAGATAGTGATTCCGATGGAAAAGCAAAAGATAATAATGCAAGGAAATGACGCATC 313
Query 706 AAAAGTGATAATTCAATACAATGATGCAGGACTATCTGCTTCGAGTGGTCCTTTAAGAGT 765
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 314 AAAAGTGATAATTCAATACAATGATGCAGGACTATCTAATTCGAGTGGTCCTTTCACACT 373
Query 766 AGACGCCGAATACTTTGTCGCTATCAACATTACTTTCA 803
| ||||||| ||||| || |||||||||||||| ||||
Sbjct 374 AAACGCCGAGTACTTCGTAGCTATCAACATTACATTCA 411
> Ahg924339 jgi|Araly1|924339|scaffold_105620.1
Length=1100
Score = 220 bits (119), Expect = 3e-56
Identities = 156/174 (90%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 2085 TTTACATTTGCGGAGATAAACTGCAAAGGGGAAGGAGCGAATAAGAGAGGAAGAGTTCGA 2144
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 904 TTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAATAAGAAAGGAAGAGTTGGA 963
Query 2145 TGGGAGAAGAATCTTAGTGCTGAAGATGTTAAATCT-CTGACTGAACCCAAAACTTTCCT 2203
||||||||||||||| |||| |||||||||||| | || | ||||||||||| |||| |
Sbjct 964 TGGGAGAAGAATCTTTCTGCTAAAGATGTTAAAT-TACTTATTGAACCCAAAAATTTCAT 1022
Query 2204 TAATGGAGATGGTTGGATGGGTACTCTTCCTTCTTCTCTCGTCTCTTTATATTT 2257
| ||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1023 TGATGAAGATGGTTGGATGGCCACTCTTCCTTCTTCTCTCGTCTCTTTATTTTT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85588780515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5