BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56550.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474813 jgi|Araly1|474813|fgenesh2_kg.1__4767__AT1G56550.1 2194 0.0
Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1 848 0.0
Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257 632 2e-180
Ahg924351 jgi|Araly1|924351|scaffold_105632.1 473 1e-132
> Ahg474813 jgi|Araly1|474813|fgenesh2_kg.1__4767__AT1G56550.1
Length=1568
Score = 2194 bits (1188), Expect = 0.0
Identities = 1449/1572 (92%), Gaps = 30/1572 (2%)
Strand=Plus/Plus
Query 65 ACACAACATAAAACATGATAACTAATTCTGACCAAACACATATATAATAATGTAGGTTAC 124
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ACACGACATAAAACATGATAAATAATTATGACCAAACACATATATAATAATGTAGGTTAC 60
Query 125 CTCTTCACGTTGTTATA-GTTTAAACAAAACAATAACGTAGATTGAGTATCTCTACACGT 183
||||||||||||||||| ||| || |||| |||||||||| ||| ||||||||||||||
Sbjct 61 CTCTTCACGTTGTTATATTTTTTAA-AAAATAATAACGTAGGTTGTGTATCTCTACACGT 119
Query 184 TGTCATTCCTGAAGAGTGTCGTTGACtttttagttttttgttcttttcctcatattttcc 243
||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 120 TGTCATTCCAGAAG-GTGTCGTTGACTTTTTACTTTTTTGTT-TTTTCCTCATATTTTCC 177
Query 244 aatttttGAATCCGATCAAACAAC--TTGTGAAAACTTTTCTTTCCAAATTTGTTTCCAT 301
|||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 178 AATTTTCGAATCCGATC--ACAACTTTTGTGAAAACTTTTCTTTCCAATTTTGTTTCCAT 235
Query 302 GGCGCAGCAGAGCCAACGTCCAATCTCAAACCG-TCACATCTCTCTCCTCAACCGTAACG 360
||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 236 GGCGCAGCAGAACCAACGTCCAATCTCAAACCGTTC-CATCTCTCTCCTCAACCGCAACG 294
Query 361 GTCTCATCCTCCTTCTCCTTCTAGCTCTCTTTGTTATCCTCGGTGTATTCTTACCTTTGA 420
||||| ||||||||||||||||||||||||| |||||||| ||||| ||| ||||||| |
Sbjct 295 GTCTCCTCCTCCTTCTCCTTCTAGCTCTCTTCGTTATCCTAGGTGTGTTCCTACCTTTAA 354
Query 421 CAAAATCTTCCTTGTTCATGTTTCCAAACACAACAtcttcttctctttctccttcttctt 480
|| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 355 CAGGATCTTCCTTATTCCTGTCTCCAGACACAACATCTTCTTCTCTTTCTCCTTCTTCTT 414
Query 481 cttTATCGGTCTCCGACTGGCGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTTGCTA 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 415 CTTTATCGGTCTCCGACTGGAGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTGGCTA 474
Query 541 AGAACGAGACTGTGATCGTCTGTGCTGTTAGCTACCCTTTCTTGCCTTTTCTTAACAACT 600
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 475 AGAACGAGACTGTGATCGTCTGTGCCGTTAGCTACCCTTTCTTGCCTTTTCTCAACAACT 534
Query 601 GGTTGATTAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGACT 660
|||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 535 GGTTAATTAGCATTTCTAGACAGAACCATCAAGAAAAGGTTCTTGTGATCGCTGAAGATT 594
Query 661 ATGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCGG 720
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 ACGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCAG 654
Query 721 CGTTGGATCCTCAATCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATCTC 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CGTTGGATCCTCAAGCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATCTC 714
Query 781 GGAGGCCACAACATCTCTTAAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATG 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGAGGCCACAACATCTCTTGAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATG 774
Query 841 TTGATATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATACT 900
||||||||||||||||||||||||| ||| | |||||||| |||||| |||| |||||||
Sbjct 775 TTGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACT 834
Query 901 TCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGATTTACCACCTCTAA 960
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 835 TCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGGTCTACCACCTCGGA 894
Query 961 GTCGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGGCG 1020
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 895 GTCGAAGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCAACGGATGGCG 954
Query 1021 GAAAGCTTCTAATGAAGACATGGGTCGAGGAAATTCAAGCTCAACCTTGGAATAACACTC 1080
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
Sbjct 955 CAAAACTTCTAATGAAGACATGGGTTGAGGAAATTCAAGTTCAACCTTGGAATAACACCC 1014
Query 1081 AAGCAAAGAAACCACATGATCAGCCTGCTTTTAATCGGGCACTTCACAAAACAGCTAATC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAGCAAAGAAACCACATGATCAGCCTGCTTTTAATCGGGCACTTCACAAAACAGCTAATC 1074
Query 1141 AAGTAAAAGTCTACTTGCTTCCGCAATCAGCTTTCCCATCAGGAGGATTGTACTTCAGGA 1200
| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 1075 AGGTAGATGTCTACTTGCTTCCGCAATCAGCATTCCCGTCAGGAGGATTGTACTTCAAGA 1134
Query 1201 ATGAGACATGGGTTAACGAGACAAGGGGGAAACATGTCATAGTCCACAATAACTACATTA 1260
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1135 ATGAGACATGGGTTAATGAGACAAAGGGGAAACATGTCATAGTCCATAATAACTACATTA 1194
Query 1261 TCGGTTACGACAAG-AAGATGAAACGTTTTCAAGACTTTAGTCTATGGCTAGTCGATGAT 1319
|||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1195 TCGGTTACGA-AAGGAAGATGAAACGCTTTCAAGACTTTAATCTATGGCTAGTAGATGAC 1253
Query 1320 CATGCTCTTGAGTCCCCACTCGGAAAACTAGAGATATATCAAGAGCAGAATACTACTACT 1379
|||||||| ||||| ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 1254 CATGCTCTCGAGTCTCCACTGGGAATATTAAAGATATATCAAGAGCAGAATACTACTACT 1313
Query 1380 GAAGGgaaaaatctgacgaaaatagtgagaaaacagaggaaaaacaggggtaaaaaaCAC 1439
||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1314 GAAGGGAAAAATCAGACGAAAACAGTGAGAAAACAGAGGAAAAACAGGGGTAAGAAACAT 1373
Query 1440 AAGTTACCCTAGAGAGGACTTCTCCTTACGTACGACAAGTGTAGGATCTCGAAATTGTTG 1499
|||||||||||||||||||||| |||| |||| |||||| ||| |||||||||||||||
Sbjct 1374 TAGTTACCCTAGAGAGGACTTCTTCTTATGTACAACAAGTATAGTATCTCGAAATTGTTG 1433
Query 1500 CGCGGAGATTTATTCAAACTCGATTACTTAGATATATGTTCAAAGTCTCC-C-ATT---- 1553
| | ||||||||||||||||||||||||||||| ||||||||||||| | | |||
Sbjct 1434 CCCAGAGATTTATTCAAACTCGATTACTTAGATTTATGTTCAAAGTCAGCACTATTTCTC 1493
Query 1554 ATAATA-T--GATATTTATACATAAATAC-T-CATCA-------GCACTATTTCATTAAT 1601
|||||| | |||||||||||||| |||| | ||||| ||||| |||||||| |
Sbjct 1494 ATAATAATATGATATTTATACATAGATACATTCATCAATCTTCAGCACTGTTTCATTATT 1553
Query 1602 AACTTTTATGTA 1613
||||||||||||
Sbjct 1554 AACTTTTATGTA 1565
> Ahg490401 jgi|Araly1|490401|fgenesh2_kg.6__3535__AT4G01750.1
Length=1394
Score = 848 bits (459), Expect = 0.0
Identities = 854/1040 (82%), Gaps = 45/1040 (4%)
Strand=Plus/Plus
Query 322 CAATCTCAAACCGTCACATCTCTCTCCTCAACCGTAACGGTCTCATCCTCCTTCTCCTTC 381
||||||||||||||| ||||| |||||| | ||| ||||| || |||||||||||||||
Sbjct 128 CAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGG--TC-TCCTCCTTCTCCTTC 184
Query 382 TAGCTCTCTTTGTTATCCTCGGTGTATTCTTACCTTTGACAAAATCTTCCT-TGTT-CAT 439
| |||||||| || |||| |||||||||||||| | | || ||| |||| |||| | |
Sbjct 185 TCGCTCTCTTCCTTCTCCTTGGTGTATTCTTACCCTGGCCAGGATC-TCCTCTGTTGC-T 242
Query 440 GTTTCCAAACACAA--CAtcttcttc-tct--ttctccttcttct-tcttTATC-GGTC- 491
|| ||||||| || | |||||| | ||| | || |||||| | |||| | | | |
Sbjct 243 ATTACCAAACA-AAGTC-TCTTCTCCTTCTAATGCTACTTCTT-TGTCTTCA-CAAGCCA 298
Query 492 --TCCGACTGGCGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTTGCTAAGAACGAG- 548
|| || |||||||||||| |||| ||||| |||| |||||| || || ||||||| |
Sbjct 299 AATCTGAATGGCGCGACTATACCCTCGCTCAGGCCGCTAAGTTCGTGGCCAAGAACG-GC 357
Query 549 ACTGTGATCGTCTGTGCTGTTAGCTAC-CCTTTCTTGCCTTTTCTTAACAACTGGTTGAT 607
|||||||||||||| || || |||| | || |||||||||||||||||||||||||||||
Sbjct 358 ACTGTGATCGTCTGCGCCGTGAGCT-CACCATTCTTGCCTTTTCTTAACAACTGGTTGAT 416
Query 608 TAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGACTATGCTAC 667
||| ||||||||||||| |||||||||||||| |||||||||||||| || || |||
Sbjct 417 TAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTAC 476
Query 668 TTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCGGCGTTGGA 727
| |||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||| | ||
Sbjct 477 TCTGTATAAAGTCAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCTGCGCTCGA 536
Query 728 TCCTC-AATCCGCACACAAATTT-GGTTCCCAGGGTTTCTTCAATCTGACATCTCGGAGG 785
| || || ||||| ||| ||| ||||||||||||||||||||| | ||| |||| |||
Sbjct 537 TTCTAGAA-CCGCATACAG-TTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGG 594
Query 786 CCACAACATCTCTTA-AACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGA 844
|| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 595 CCGCAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGA 653
Query 845 TATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATACTTCAT 904
|||||| ||| | |||||||| ||| | ||||| | |||||| |||| || |||||||
Sbjct 654 TATGGTTTGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCACGACGCGTACTTCAC 713
Query 905 GGATGACATGATTGCGA-TTAAGCCTTTGAATCACTCCCATGATTTACCACCTCTA-AGT 962
|||||| ||| | | | ||||||||||||||||||| |||||||||||| || | |
Sbjct 714 GGATGATATGCCT-CAAATTAAGCCTTTGAATCACTCTCATGATTTACCAGATCCGGA-T 771
Query 963 CGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGGCGGA 1022
| || ||||| |||||| |||||||||||||||||| ||||||| |||||||||| | |
Sbjct 772 CAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGTCCCACTGATGGTGCA 831
Query 1023 AAGCTTCTAATGAAGACATGG-GTCGAGGAAATTCAAGCTCAACCTTGGAATAACACTCA 1081
|||||||||||||||| |||| || |||||| ||||| | ||| ||||| | | | ||
Sbjct 832 AAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCAATCCCAAGCTTGGTCTGAGTC-CA 889
Query 1082 AGCAAAG-AAACCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAAT 1139
| ||| || |||| |||||||||||||| | || ||||| ||||||||||| ||
Sbjct 890 TCCGTTTTAAAGCAAATGACCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCTCAT 948
Query 1140 CAAGTAAAAGTCTACTTGCT-TCCGCAA-TCAGCTTTCCCATCAGGAGGATTGTACTTCA 1197
||||| | | |||||||| || |||| | |||||| ||| ||||||||||||||||||
Sbjct 949 CAAGTGGATCTGTACTTGCTCTC-GCAAGT-AGCTTTTCCAACAGGAGGATTGTACTTCA 1006
Query 1198 GGAATGAGACATGGGTTAACGAGACAAGGGGGAAACATGTCATAGTCCACAATAACTACA 1257
| || ||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 1007 GTAACGAGGCATGGGTTAAAGAGACAAAGGGGAAACATGTCATAATCCACAATAACTACA 1066
Query 1258 TTATCGGTTACGACAAGAAGATGAAACGTTTTCAAGACTTTAGTCTATGGCTAGTCGATG 1317
|||||||||||||||| || |||| |||||| ||||| | | ||||||||||||||||||
Sbjct 1067 TTATCGGTTACGACAACAAAATGAGACGTTTCCAAGAATATGGTCTATGGCTAGTCGATG 1126
Query 1318 ATCATGCTCTTGAGTCCCCA 1337
||||| |||| ||||| |||
Sbjct 1127 ATCATACTCTCGAGTCTCCA 1146
> Ahg352664 jgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257
Length=915
Score = 632 bits (342), Expect = 2e-180
Identities = 681/840 (81%), Gaps = 41/840 (5%)
Strand=Plus/Plus
Query 322 CAATCTCAAACCGTCACATCTCTCTCC-TCAACCGTAACGGTCTCATCCTCCTTCTCCTT 380
|||||||| ||||| ||||||| ||| | | ||| ||||| || ||||||||||||||
Sbjct 68 CAATCTCAGTCCGTCCCATCTCTGTCCGT-AGCCGCAACGG--TC-TCCTCCTTCTCCTT 123
Query 381 CTAGCTCTCTT-TGTTATCCTCGGTGTATTCTTACCTTTGACAAAATCTTCCTTGTT-CA 438
|| |||||||| | || ||||||||||||||||||| | | || |||| |||| || ||
Sbjct 124 CTCGCTCTCTTCT-TTCTCCTCGGTGTATTCTTACCCTGGCCAGGATCTCCCTTATTCCA 182
Query 439 TGTTTCCAAACACAACAtcttcttc-tctttctccttcttct-t--cttTATCGGTC--T 492
||||||||||| || | |||||| || |||| |||| ||| | | | |||| | |
Sbjct 183 -GTTTCCAAACA-GAC-T-TTCTTCTTC-TTCTTCTTC-TCTGTCACCGTCTCGG-CAGT 235
Query 493 CCGACTGGCGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTTGCTAAGAACGAG-ACT 551
|| | |||| ||||||| |||||||||| |||| |||||| || || ||||||| | |||
Sbjct 236 CCAAATGGCACGACTATACCCTTGCTCAGGCCGCTAAGTTCGTGGCCAAGAACG-GCACT 294
Query 552 GTGATCGTCTGTGCTGTTAGCTAC-CCTTTCTTGCCTTTTCTTAACAACTGGTTGATTAG 610
||||||||||| || || |||| | || |||||||||||||| |||||||||||||||||
Sbjct 295 GTGATCGTCTGCGCCGTGAGCT-CACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAG 353
Query 611 CATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGACTATGCTACTTT 670
||||||||||||| |||||||||||||| || ||||||||||| || || |||||| |
Sbjct 354 TGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTCGTGATCGCTGAGGATTACGCTACTCT 413
Query 671 GTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCGGCGTTGGA-TC 729
||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||| | || ||
Sbjct 414 GTATAAAGTTAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCGGCGCTCGATTC 473
Query 730 CTCAATCCGCACACAAATTT-GGTTCCCAGGGTTTCTTCAATCTGACATCTCGGAGGCCA 788
| || ||||| || | ||| ||||||||||||||||||||| | ||| |||| |||||
Sbjct 474 C-AAAACCGCATAC-AGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCG 531
Query 789 CAACATCTCTT-AAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGATAT 847
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 CAACATCTCTTGCAA-GTTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATAT 590
Query 848 GGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATACTTCATGGA 907
||| ||| | |||||||| ||| | ||||| | |||||| | || | ||||||| |||
Sbjct 591 GGTTTGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCATGACGTGTACTTCACGGA 650
Query 908 TGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGATTTACCACCTCTAAGTCGAA 966
|||| || | | | ||| ||||||||||||||| ||||||||||||| || ||||||
Sbjct 651 TGACTTGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGGTCGAA 709
Query 967 GCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGGCGGAAAGC 1026
||||| || ||| |||||||||||||||||| |||||| ||||| |||| | |||||
Sbjct 710 ACGGAGAGACGTATATATGTAGCTGCATGATTTACTTGCGACCCACTAATGGTGCAAAGC 769
Query 1027 TTCTAATGAAGACATGG-GTCGAGGAAATTCAAGCTCAACCTTGGAATAACACTCAAGCA 1085
|||||||||||| |||| || |||||| ||||| | ||| ||||| | | | || |
Sbjct 770 TTCTAATGAAGAAATGGAGT-GAGGAACTTCAATCCCAAGCTTGGTCTGAGTC-CATCCG 827
Query 1086 AAG-AAA-CCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAATCAA 1142
||| ||| ||||||||||||||||||| | || ||||| ||||||||||| |||||
Sbjct 828 TTTTAAAGCCA-ATGATCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCTCATCAA 885
> Ahg924351 jgi|Araly1|924351|scaffold_105632.1
Length=610
Score = 473 bits (256), Expect = 1e-132
Identities = 385/442 (87%), Gaps = 30/442 (7%)
Strand=Plus/Plus
Query 599 CTGGTTGATTAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGA 658
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 32 CTGGTTGATTAGCATTTCTAGACAGAACCATGAAGAAAAAGTTCTTGTGATCGCTGAAGA 91
Query 659 CTATGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCC 718
|| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |
Sbjct 92 TTACGCTACTTTGTACAAAGTCAACGAAAGGTGGCCTGGTCATGCCGTCCTCATTCCTTC 151
Query 719 GGCGTTGGATCCTCAATCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATC 778
||||||||||||||| |||||||||||||||||||||||| | || | |||||
Sbjct 152 AGCGTTGGATCCTCAAGCCGCACACAAATTTGGTTCCCAGG----C--CA--CA-ACATC 202
Query 779 TCGGAGGCCACAACATCTCTTAAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGA 838
|| | | || ||||| ||||||||||||||||||||||||||||||
Sbjct 203 TC-------------T-TG--AA-CATTT-GGAGCTAGGTTACAATGTTATGTACAATGA 244
Query 839 TGTTGATATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATA 898
||||||||||||||||||||||||||| ||| | |||||||| |||||| |||| |||||
Sbjct 245 TGTTGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATA 304
Query 899 CTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGATTTACCACCTCT 958
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 305 CTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGGTCTACCACCACG 364
Query 959 AAGTCGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGG 1018
|||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||
Sbjct 365 GAGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC---CCACGGATGG 421
Query 1019 CGGAAAGCTTCTAATGAAGACA 1040
|| |||||||||||||||||||
Sbjct 422 CGCAAAGCTTCTAATGAAGACA 443
Score = 111 bits (60), Expect = 1e-23
Identities = 70/74 (95%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 1075 ACACTCAAGCAAAGAAACCACATG---ATCAGCCTGCTTTTAATCGGGCACTTCACAAAA 1131
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 441 ACACCCAAGCAAAGAAACCACATGATCATCAGCCTGCTTTTAATCGGGCACTTCACAAAA 500
Query 1132 CAGCTAATCAAGTA 1145
||||||||||||||
Sbjct 501 CAGCTAATCAAGTA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5