BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56553.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value Ahg924358 jgi|Araly1|924358|scaffold_105639.1 368 1e-101 Ahg914958 jgi|Araly1|914958|Al_scaffold_0001_5212 366 5e-101 > Ahg924358 jgi|Araly1|924358|scaffold_105639.1 Length=299 Score = 368 bits (199), Expect = 1e-101 Identities = 246/268 (92%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 1 ATGGCCATAACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT 60 ||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 24 ATGGCTATCACCGTGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTATCATCATATCT 83 Query 61 TTTGTTCACAGTCGTACAACAACTTCAGGTTATGGAATGTTATTTGACTCCGTGGCTTGC 120 ||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||| Sbjct 84 TTTGTTCACAGTCGTACAACAACATCAGGTTATGGAATGTTGTTTGACGCTGTGGCTTGC 143 Query 121 GAGGGAGGATTTGAATATTGTCCTCGTGGTGGTGG-GAACGACAAGTGCACTACCTTTTG 179 ||||||||||||||||||||||||| ||||||||| || || |||||||||| |||| || Sbjct 144 GAGGGAGGATTTGAATATTGTCCTCCTGGTGGTGGAGA-CGCCAAGTGCACTGCCTTCTG 202 Query 180 TAGAAGCTTGCCAAACAAATATGATTTTGGCGTATGT-GATAAGATCTACGCATGTTGCT 238 || || |||||||||||||||||||||||| |||||| | |||||| ||||||||||||| Sbjct 203 TAAAACCTTGCCAAACAAATATGATTTTGGAGTATGTAG-TAAGATATACGCATGTTGCT 261 Query 239 GTCATATAAATGTTTAAAAGATAAATAT 266 |||||| |||||||||||| |||||||| Sbjct 262 GTCATAAAAATGTTTAAAA-ATAAATAT 288 > Ahg914958 jgi|Araly1|914958|Al_scaffold_0001_5212 Length=255 Score = 366 bits (198), Expect = 5e-101 Identities = 238/257 (93%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 ATGGCCATAACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT 60 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTATCACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT 60 Query 61 TTTGTTCACAGTCGTACAACAACTTCAGGTTATGGAATGTTATTTGACTCCGTGGCTTGC 120 ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| Sbjct 61 TTTGTTCACAGTCGTACAACAACACCAGGTTATGGAATGTTGTTTGACGCCGTGGCTTGC 120 Query 121 GAGGGAGGATTTGAATATTGTCCTCGTGGTGGTGG-GAACGACAAGTGCACTACCTTTTG 179 ||||||||||||||||||||||||| ||||||||| || || |||||||||| |||| || Sbjct 121 GAGGGAGGATTTGAATATTGTCCTCCTGGTGGTGGAGA-CGCCAAGTGCACTGCCTTCTG 179 Query 180 TAGAAGCTTGCCAAACAAATATGATTTTGGCGTATGT-GATAAGATCTACGCATGTTGCT 238 || || |||||||||||||||||||||||| |||||| | |||||| ||||||||||||| Sbjct 180 TAAAACCTTGCCAAACAAATATGATTTTGGAGTATGTAG-TAAGATATACGCATGTTGCT 238 Query 239 GTCATATAAATGTTTAA 255 |||||| |||||||||| Sbjct 239 GTCATAAAAATGTTTAA 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12095321713 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5