BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56553.1

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924358 jgi|Araly1|924358|scaffold_105639.1                        368    1e-101
  Ahg914958 jgi|Araly1|914958|Al_scaffold_0001_5212                    366    5e-101


> Ahg924358 jgi|Araly1|924358|scaffold_105639.1
Length=299

 Score =  368 bits (199),  Expect = 1e-101
 Identities = 246/268 (92%), Gaps = 5/268 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCATAACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT  60
            ||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  24   ATGGCTATCACCGTGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTATCATCATATCT  83

Query  61   TTTGTTCACAGTCGTACAACAACTTCAGGTTATGGAATGTTATTTGACTCCGTGGCTTGC  120
            ||||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||||
Sbjct  84   TTTGTTCACAGTCGTACAACAACATCAGGTTATGGAATGTTGTTTGACGCTGTGGCTTGC  143

Query  121  GAGGGAGGATTTGAATATTGTCCTCGTGGTGGTGG-GAACGACAAGTGCACTACCTTTTG  179
            ||||||||||||||||||||||||| ||||||||| || || |||||||||| |||| ||
Sbjct  144  GAGGGAGGATTTGAATATTGTCCTCCTGGTGGTGGAGA-CGCCAAGTGCACTGCCTTCTG  202

Query  180  TAGAAGCTTGCCAAACAAATATGATTTTGGCGTATGT-GATAAGATCTACGCATGTTGCT  238
            || || |||||||||||||||||||||||| |||||| | |||||| |||||||||||||
Sbjct  203  TAAAACCTTGCCAAACAAATATGATTTTGGAGTATGTAG-TAAGATATACGCATGTTGCT  261

Query  239  GTCATATAAATGTTTAAAAGATAAATAT  266
            |||||| |||||||||||| ||||||||
Sbjct  262  GTCATAAAAATGTTTAAAA-ATAAATAT  288


> Ahg914958 jgi|Araly1|914958|Al_scaffold_0001_5212
Length=255

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 238/257 (93%), Gaps = 4/257 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCATAACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT  60
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTATCACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT  60

Query  61   TTTGTTCACAGTCGTACAACAACTTCAGGTTATGGAATGTTATTTGACTCCGTGGCTTGC  120
            |||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||||
Sbjct  61   TTTGTTCACAGTCGTACAACAACACCAGGTTATGGAATGTTGTTTGACGCCGTGGCTTGC  120

Query  121  GAGGGAGGATTTGAATATTGTCCTCGTGGTGGTGG-GAACGACAAGTGCACTACCTTTTG  179
            ||||||||||||||||||||||||| ||||||||| || || |||||||||| |||| ||
Sbjct  121  GAGGGAGGATTTGAATATTGTCCTCCTGGTGGTGGAGA-CGCCAAGTGCACTGCCTTCTG  179

Query  180  TAGAAGCTTGCCAAACAAATATGATTTTGGCGTATGT-GATAAGATCTACGCATGTTGCT  238
            || || |||||||||||||||||||||||| |||||| | |||||| |||||||||||||
Sbjct  180  TAAAACCTTGCCAAACAAATATGATTTTGGAGTATGTAG-TAAGATATACGCATGTTGCT  238

Query  239  GTCATATAAATGTTTAA  255
            |||||| ||||||||||
Sbjct  239  GTCATAAAAATGTTTAA  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12095321713


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5