BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56555.1 Length=534 Score E Sequences producing significant alignments: (Bits) Value Ahg924361 jgi|Araly1|924361|scaffold_105642.1 490 4e-138 > Ahg924361 jgi|Araly1|924361|scaffold_105642.1 Length=485 Score = 490 bits (265), Expect = 4e-138 Identities = 320/347 (92%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 184 TTGAAGAAAGTAACACTTGGCCAACCACAGAAACTTGGTAAAGTTGTATCAAAGGAAGAA 243 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 114 TTGAAGAAAGTAACACTTGGCCAACCACAGACACTTGGTATTGTTGTATCAAACGAAGAA 173 Query 244 AATTCTGATATTGGCTCTAATAACACATGTAATGTTGGAGAAAACATGGAAG-AAAAGGA 302 |||||||||||||||||||||| || | | ||||||| ||||||||||| || |||| || Sbjct 174 AATTCTGATATTGGCTCTAATATCATAAGCAATGTTGTAGAAAACATGG-AGAAAAATGA 232 Query 303 AACATTATCAGTCGATCGAGAACTAGTAGAGTTAAGTGTACAAAAAGAAAAGGCTCCAAG 362 | |||||| || ||| |||||| |||||||||| |||||| |||||||||||||||||| Sbjct 233 GAGATTATCGGTTGATGGAGAACAAGTAGAGTTACGTGTACCAAAAGAAAAGGCTCCAAG 292 Query 363 AAAAATTGTGAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA 422 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 AAAAATTGTTAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA 352 Query 423 GAGGAGGACATCGAAAGGAAGTTTTAGTTCCTTCGATGAGCATGAGGTTATGTCTTTGAA 482 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 353 GAGGAGGACATCGAAAGGAAGTTTTAGTTCTTTCGATGAGCATGATGTTATGTCTTTGAA 412 Query 483 ACCATTGAAGTCGATTCTAAGAAAGGATTCAGGAGTAAGCAAAGATC 529 ||||||||| |||||||| ||||||||||||| |||||||||| ||| Sbjct 413 ACCATTGAAATCGATTCTGAGAAAGGATTCAGAAGTAAGCAAATATC 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19459350390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5