BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56555.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924361 jgi|Araly1|924361|scaffold_105642.1                        490    4e-138


> Ahg924361 jgi|Araly1|924361|scaffold_105642.1
Length=485

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 320/347 (92%), Gaps = 2/347 (1%)
 Strand=Plus/Plus

Query  184  TTGAAGAAAGTAACACTTGGCCAACCACAGAAACTTGGTAAAGTTGTATCAAAGGAAGAA  243
            ||||||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||
Sbjct  114  TTGAAGAAAGTAACACTTGGCCAACCACAGACACTTGGTATTGTTGTATCAAACGAAGAA  173

Query  244  AATTCTGATATTGGCTCTAATAACACATGTAATGTTGGAGAAAACATGGAAG-AAAAGGA  302
            |||||||||||||||||||||| || | | ||||||| ||||||||||| || |||| ||
Sbjct  174  AATTCTGATATTGGCTCTAATATCATAAGCAATGTTGTAGAAAACATGG-AGAAAAATGA  232

Query  303  AACATTATCAGTCGATCGAGAACTAGTAGAGTTAAGTGTACAAAAAGAAAAGGCTCCAAG  362
             | |||||| || ||| |||||| |||||||||| |||||| ||||||||||||||||||
Sbjct  233  GAGATTATCGGTTGATGGAGAACAAGTAGAGTTACGTGTACCAAAAGAAAAGGCTCCAAG  292

Query  363  AAAAATTGTGAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA  422
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  AAAAATTGTTAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA  352

Query  423  GAGGAGGACATCGAAAGGAAGTTTTAGTTCCTTCGATGAGCATGAGGTTATGTCTTTGAA  482
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  353  GAGGAGGACATCGAAAGGAAGTTTTAGTTCTTTCGATGAGCATGATGTTATGTCTTTGAA  412

Query  483  ACCATTGAAGTCGATTCTAAGAAAGGATTCAGGAGTAAGCAAAGATC  529
            ||||||||| |||||||| ||||||||||||| |||||||||| |||
Sbjct  413  ACCATTGAAATCGATTCTGAGAAAGGATTCAGAAGTAAGCAAATATC  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5