BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56560.1
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474815 jgi|Araly1|474815|fgenesh2_kg.1__4769__AT1G56560.1 2604 0.0
Ahg928294 jgi|Araly1|928294|scaffold_300751.1 621 6e-177
> Ahg474815 jgi|Araly1|474815|fgenesh2_kg.1__4769__AT1G56560.1
Length=1955
Score = 2604 bits (1410), Expect = 0.0
Identities = 1565/1638 (96%), Gaps = 18/1638 (1%)
Strand=Plus/Plus
Query 330 AATTCTCAACATCCGTTGAAACTAA-TCTCAGTGACAAGAGTTTCGAGAGAATTCATGTT 388
||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 213 AATTCTCCACATCCGTTGAAACCAATTC-CAGTGACAAGAGTTTCGAGAGAATTCATGTT 271
Query 389 CAAAGTGATGCAATTTTAGAAAGGATACACAAAAACGAAGAAGAAGTAGAAACAGTTTCT 448
|| |||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 272 CAGAGTGGTGCAATTTTAGAAAGGATACACAAAAACGAAGAAG-A--AGAAACTGTTTCT 328
Query 449 --A-T---TGGTAG----TGAGAAAGTTGTGAGAGAAGAGAGTGAAGCTGAGAAAGAAGC 498
| | | |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 329 AAAGTAAAT-GTAGAAACTGAGAGAGTTGTGAGAGAAGAGAGTGAAGCTGAGAAAGAAGC 387
Query 499 GTGGAGGATTTTGGAAAACGCTGTTGTTAGGTATTGTGGTTCTCCGGTTGGGACAGTGGC 558
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 388 GTGGAGGATTTTGGAAAACGCTGTTGTTAGGTATTGTGGTTCGCCGGTAGGGACTGTGGC 447
Query 559 GGCGAATGATCCTGGAGATAAGATGCCTTTGAATTATGATCAAGTTTTTATAAGAGATTT 618
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 448 GGCGAATGATCCTGGAGATAAGATGCCTTTGAATTATGATCAAGTGTTTATTAGAGATTT 507
Query 619 TGTGCCTTCTGCTTTGGCTTTTTTGCTTAAAGGTGAAGGTGATATTGTTAGGAACTTTCT 678
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 508 TGTACCTTCTGCTTTAGCTTTTTTGCTTAAAGGAGAAGGTGATATTGTTAGGAACTTTCT 567
Query 679 CCTTCATACATTACAGCTTCAGAGTTGGGAGAAAACTGTAGACTGTTACAGTCCTGGACA 738
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 568 TCTACATACATTGCAGCTTCAGAGTTGGGAGAAAACTGTAGATTGTTACAGTCCTGGACA 627
Query 739 GGGTTTGATGCCTGCAAGTTTTAAAGTAAGAACTGTGGCGCTTGATGAGAACACTACGGA 798
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 628 GGGCTTGATGCCTGCGAGTTTTAAAGTAAGAACCGTGGCGCTTGATGAGAACACTACGGA 687
Query 799 AGAGGTTTTGGATCCGGATTTTGGTGAATCAGCTATTGGTCGTGTTGCTCCTGTGGATTC 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 688 AGAGGTTTTGGATCCGGATTTTGGTGAATCAGCTATTGGTCGTGTTGCTCCTGTTGATTC 747
Query 859 TGGTTTGTGGTGGATTATTCTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCGTT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 748 TGGTTTGTGGTGGATTATTCTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCATT 807
Query 919 ACAAGAGAGGATAGATGTTCAGACAGGGATAAAGCTTATCATGAACTTGTGTTTAGCAGA 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ACAAGAGAGGATAGATGTTCAGACAGGGATAAAGCTTATCATGAACTTGTGTTTAGCAGA 867
Query 979 TGGATTTGATATGTTTCCAACACTTTTGGTCACTGATGGTTCTTGTATGATTGATCGTCG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TGGATTTGATATGTTTCCAACACTTTTGGTCACTGATGGTTCTTGTATGATTGATCGTCG 927
Query 1039 TATGGGTATCCATGGCCA-CCCTCTCGAAATCCAATCGTTATTCTACTCAGCACTAAGAT 1097
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||
Sbjct 928 TATGGGTATCCATGGCCATCCC-CTTGAAATCCAATCGTTATTCTACTCAGCACTCAGAT 986
Query 1098 GCTCCCGTGAGATGCTTTCTGTTAATGATAGCTCTAAGGATCTTGTAAGAGCCATTAACA 1157
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 987 GCTCCCGTGAGATGCTTTCTGTTAATGACAGCTCCAAGAATCTTGTAAGAGCCATTAACA 1046
Query 1158 ATAGATTAAGTGCTTTGTCCTTTCATATCAGAGAATACTACTGGGTGGACATAAAAAAGA 1217
|||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1047 ATAGGTTAAGTGCTCTGTCATTTCATATCAGAGAGTACTACTGGGTGGACATAAAAAAGA 1106
Query 1218 TCAATGAGATATACCGTTACAAGACAGAAGAGTATTCCACGGATGCGACTAACAAGTTCA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TCAATGAGATATACCGTTACAAGACAGAAGAGTATTCCACGGATGCGACTAACAAGTTCA 1166
Query 1278 ACATCTATCCTGAGCAAATTCCTCCATGGCTCATGGACTGGATACCCGAGCAAGGTGGGT 1337
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1167 ACATCTATCCTGAGCAAATTCCTCCATGGCTCATGGACTGGATTCCCGAGCAAGGTGGAT 1226
Query 1338 ATCTCCTTGGGAACCTACAACCTGCACACATGGATTTCAGATTCTTCACGCTTGGGAACT 1397
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1227 ATCTCCTCGGGAACCTACAACCTGCTCACATGGATTTCAGATTCTTCACGCTCGGGAACT 1286
Query 1398 TTTGGTCTATTGTTTCGTCCTTGGCTACACCAAAGCAGAATGAAGCTATATTGAACTTAA 1457
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1287 TTTGGTCTATTGTTTCGTCCTTGGCTACACCCAAGCAGAATGAAGCTATATTGAACTTAA 1346
Query 1458 TTGAAGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TTGAAGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT 1406
Query 1518 TAGAGTACGATGATTGGCGTATAATAACTGGAAGCGACCCAAAGAACACGCCTTGGTCGT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TAGAGTACGATGATTGGCGTATAATAACTGGAAGCGACCCAAAGAACACGCCTTGGTCGT 1466
Query 1578 ATCACAACAGTGGATCCTGGCCAACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGA 1637
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1467 ATCACAACAGTGGATCCTGGCCCACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGA 1526
Query 1638 TGGGAAGACCAGAGCTAGCTGAAAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAG 1697
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TGGGAAGACCAGAGCTAGCGGAAAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAG 1586
Query 1698 ATCGTTGGCCAGAGTACTACGACACCCGATCTGGCAAATTCATTGGAAAGCAGTCTCGCC 1757
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1587 ATCGGTGGCCAGAGTATTACGACACCCGATCTGGCAAATTCATTGGAAAGCAGTCCCGGC 1646
Query 1758 TCTACCAGACATGGACAGTCGCTGGATTCTTGACTTCTAAACTCCTCCTAGCAAATCCAG 1817
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1647 TTTACCAAACATGGACAGTCGCTGGATTCTTGACTTCTAAACTCCTCCTAGCTAATCCAG 1706
Query 1818 AGATGGCATCACTGTTATTCTGGGAAGAAGATTACGAACTTCTCGATATTTGTGCATGTG 1877
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 1707 AGATGGCATCACTGTTATTCTGGGAAGAAGATTATGAACTTCTGGATATCTGTGCCTGTG 1766
Query 1878 GTCTTAGAAAATCTGACCGGAAGAAATGCTCCCGAGTCGCTGCCAAGACTCAGATTCTTG 1937
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1767 GTCTCCGAAAATCTGACCGGAAGAAATGCTCCCGAGTCGCTGCCAAGACTCAAATTCTTG 1826
Query 1938 TTCGATGAATGCAAAACA 1955
|||||||| |||||||||
Sbjct 1827 TTCGATGAGTGCAAAACA 1844
Score = 298 bits (161), Expect = 1e-79
Identities = 197/214 (92%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 82 CTCATCTCTAACCATGAGCGCAATCTATCTCCTCCGCAAAATTTCCACGAAAACTCCTTC 141
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCGTCTCTAACCATGAGCGCAATCTATCTCCTCCGCAAAATTTCCACGAAAACTCCTTC 60
Query 142 ACGATTTCACAGAAGCCTCTTCTTCTCCACTTTCTCCAAGGATTCACCACCAGATTTATC 201
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 61 ACGATTTCACAGAAGCCTCTTCTTCTCCACTTTCTCCAAGGAATCAAAACCAGATTCATC 120
Query 202 TCGAACCACCTCAATTCGCCATTTATCATCAAGCCAGAGATTCGTCTCTTCGTCCATTTA 261
||||| | |||||||||||||||| || | |||||||||||||| |||||||||||||
Sbjct 121 ACGAACAAACTCAATTCGCCATTTAGCA--A-GCCAGAGATTCGTCCCTTCGTCCATTTA 177
Query 262 CTGTTTCCCCCAATCAAAGATTTTACCAAATCGA 295
| |||| ||||||||||| |||||||| ||||||
Sbjct 178 CCGTTTTCCCCAATCAAAAATTTTACCTAATCGA 211
> Ahg928294 jgi|Araly1|928294|scaffold_300751.1
Length=2011
Score = 621 bits (336), Expect = 6e-177
Identities = 1060/1400 (76%), Gaps = 88/1400 (6%)
Strand=Plus/Plus
Query 536 GGTTCTCCGGTTGGGACAGTGGCGGCGAATGATCCTGGAGATA-AGATG-CCTTTGAATT 593
||||| ||||| ||||| || ||||| |||||||| || |||| | | | || |||||||
Sbjct 583 GGTTC-CCGGTGGGGACTGTAGCGGCTAATGATCCAGGGGATACACA-GACC-TTGAATT 639
Query 594 ATGATCAAGTTTTTATAAGAGATTTTGTGCCTTCTGC-TTTGGCTTTTTTGCTTAAAGGT 652
||||||| || ||||| | |||||||| ||||| || | | |||||| ||||| | ||
Sbjct 640 ATGATCAGGTGTTTATTCGCGATTTTGTTCCTTCGGCGTAT-GCTTTTATGCTTGATGGA 698
Query 653 GAAGGTGATATTGTTAGGAACTTTCTCCTTCATACATTACAGCTT-CAGAGTTGGGAGAA 711
||||| || ||||| || |||||||| ||||||||||| ||| || ||||| ||||||||
Sbjct 699 GAAGGGGAGATTGTCAGAAACTTTCTTCTTCATACATTGCAG-TTGCAGAGCTGGGAGAA 757
Query 712 AACTGTAGACTGTTACAGTCCTGG-ACAGGGTTTGATGCCTGCAAGTTTTAAAGT-AAGA 769
||| || |||||| |||| ||||| ||||| | ||||| || ||||||||||| || |
Sbjct 758 AACGGTGGACTGTCACAGCCCTGGCCCAGGG-CTAATGCCAGCGAGTTTTAAAGTGAA-A 815
Query 770 ACTGTGGCGCTTGATGAG-AA-CA---CT-A-CGGAAGAGGTTTTGGATCCGGATTTTGG 822
||| | | ||||| | | || | | | || ||| |||| ||||| || |||||
Sbjct 816 TCTGAGCCACTTGA-GGGAAATGATGGTTCATTTGAGGAGTTTTTAGATCCAGACTTTGG 874
Query 823 TGAATCAGCTATTGGTCGTGTT-GCTCCTGTGGATTCTGGTTTGTGGTGGAT--TATTCT 879
|| |||||| ||||| |||||| || ||||| || ||||||||||||||||| ||||
Sbjct 875 TGGATCAGCCATTGGGCGTGTTAGC-CCTGTTGACTCTGGTTTGTGGTGGATCATATT-G 932
Query 880 CTTGAGGGCATATGGAAAGATAACTGGAGATTTC-TCGTTACAAGAGAGGATAGATGTTC 938
| |||| || ||||||||| | || || || | | | ||| |||||| | || |||||||
Sbjct 933 C-TGAGAGCTTATGGAAAGCTCACGGGTGACTACAT-GTTGCAAGAGCGAATTGATGTTC 990
Query 939 AGACAGGGATAAAGCTT-ATCA-TGAA-CTTGTGTTTAGCAGATGGATTTGATATGTTTC 995
| |||||||| ||| || || | | || | ||||| |||| ||||| ||||| ||||| |
Sbjct 991 AAACAGGGATCAAG-TTGAT-ACTAAAGC-TGTGTCTAGCCGATGGCTTTGACATGTTCC 1047
Query 996 CAACACTT-TTGGTCACTGATGGTTCTTGTATGATTGATCGTCGTATGGGTATCCATGGC 1054
| || ||| || || ||||| || || |||||||||||||| | ||||| || |||||
Sbjct 1048 CGACTCTTCTT-GTGACTGACGGATCATGTATGATTGATCGAAGAATGGGCATTCATGGG 1106
Query 1055 CACCCTCTCGAAATCCAATCGTTATTCTACTCAGCACTAAGATGCT-CCCGTGAGATGCT 1113
|| || || ||||||||| | || |||||||| || || | || | |||| ||| ||||
Sbjct 1107 CATCCACTTGAAATCCAAGCATTGTTCTACTCTGCTCTCCGCTG-TGCCCGAGAGGTGCT 1165
Query 1114 T-TCTGTTAATGATAGCTCTAAGGATCTT-GTAAG-AGCCATTAACAATAGATTAAGTGC 1170
| | ||| |||||| | | || || ||| || | || |||||||| | |||||||
Sbjct 1166 TAT-TGTGAATGATGGAACCAA-GAACTTAGT-TGCTGCGGTTAACAATCGCCTAAGTGC 1222
Query 1171 TTTGTCCTTTCATATCAGAGAATACTACTGGGTGGACAT-AAAAAAGATCAATGAGATAT 1229
||| || || ||||||||||| ||||| |||||||| || || ||| ||||| |||||||
Sbjct 1223 TTTATCGTTCCATATCAGAGAGTACTATTGGGTGGATATCAAGAAA-ATCAACGAGATAT 1281
Query 1230 ACCGTTACAAGACAGAAGAGTATTCCA-CGGATGCGACTAACAAGTTCAACATCTATCCT 1288
|||||||||| || || ||||||| || | ||||| || |||||||| ||||| |||||
Sbjct 1282 ACCGTTACAACACTGAGGAGTATT-CAGCAGATGCAACCAACAAGTTTAACATATATCCG 1340
Query 1289 GAGCAAATTCCTCCATGGCTCATGGACTGGATACCCGAGCAAGGTGGGTATC-TCCTTGG 1347
|| || || ||| | ||||| | |||||||| || || |||| || || | || | ||
Sbjct 1341 GATCAGATCCCTACTTGGCTTGTCGACTGGATTCCTGATAAAGGCGGTTA-CTTCATAGG 1399
Query 1348 GAACCTACAACCTGCACACATGGATTTCAGATTCTTCACGCTTGGGAACTTTTGGTCTAT 1407
|| || || ||||| ||||||||||||||||||||||||||||| ||| | ||| | |
Sbjct 1400 AAATCTTCAGCCTGCTCACATGGATTTCAGATTCTTCACGCTTGGAAACCTCTGGGCCGT 1459
Query 1408 TGTTTCGTC-CTTGGCTACACCAA-AGCAGAATGAAGCTA-T-ATTGA-ACTTAATTGAA 1462
| |||| || || || | ||||| | ||||| |||| | | || || ||| ||| |||
Sbjct 1460 TATTTCATCTCTGGGA-A-ACCAAGAACAGAACGAAGG-AGTCAT-GACACT-AATCGAA 1514
Query 1463 GCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT-TAGA 1521
| |||||||| ||| || ||| || |||||||| ||||| |||| || || | ||||
Sbjct 1515 GAGAAATGGGATGATCTTGTTGCAAACATGCCTCTCAAGATTTGTTTTCCGGC-TCTAGA 1573
Query 1522 GTACGATGATTGGCGTATAATAACTGGAAGC-GACCCAAAGAACACGCCTTGGTCGTATC 1580
| | || || ||||| ||||| |||||| | || |||||||||||||||||||| || |
Sbjct 1574 GAAAGACGAATGGCGAATAATTACTGGAT-CTGATCCAAAGAACACGCCTTGGTCATACC 1632
Query 1581 ACAACAGTGGATCCTGGCCAACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGATGG 1640
|||| |||||||||||||||| || || |||||||| ||||| || ||||| |||||||
Sbjct 1633 ACAATGGTGGATCCTGGCCAACTCTCCTCTGGCAGTTTACATTGGCTTGTATCAAGATGG 1692
Query 1641 G-AAGAC-CAGAGCTAGCTGAA-AAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAG 1697
| ||| | | || || || ||| || || |||| || || ||||| || || || ||
Sbjct 1693 GGAAG-CTC-GAACTGGC-GAAGAAAGCAGTTGCTGTAGCAGAGAAAAGGCTCAAGGAAG 1749
Query 1698 ATCGTTGGCCAGAGTACTACGACACCCGAT-CTGGCAAATTCATTGG-AAAGCAGTCTCG 1755
|| ||||| ||||| || ||||| | | || | |||| | || ||| || || |
Sbjct 1750 ATAAATGGCCTGAGTATTATGACACGAAAAGCGGG-AGATTCGTGGGGAAA-CAATCAAG 1807
Query 1756 CCTCTACCAGACATGGAC-AGTCGCTGGATTCTTGACTTCTAA-ACTCCTCCTAG--CAA 1811
|| |||||||| ||||| | |||| || |||||| | |||| | | || ||| |||
Sbjct 1808 GCTTTACCAGACTTGGACCA-TCGCAGGTTTCTTGGCAGCTAAGAAAC-TCATAGAGCAA 1865
Query 1812 ATCCAGAGATGGCATCACTGTTATTCTGGGAAGAAGATTA-CGAACTTCTCGATATTTGT 1870
|| |||| |||||||| || ||||||||||| || || | | || ||||| | ||||
Sbjct 1866 --CCTGAGAAAGCATCACTCTTGTTCTGGGAAGAGGACTATC-AGCTGCTCGAGACTTGT 1922
Query 1871 G-CATGTGGTCTTAG-AAAA 1888
| | ||||| || || ||||
Sbjct 1923 GTC-TGTGGCCTGAGTAAAA 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79341980335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5