BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56580.1

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924364 jgi|Araly1|924364|scaffold_105645.1                        839    0.0  


> Ahg924364 jgi|Araly1|924364|scaffold_105645.1
Length=542

 Score =  839 bits (454),  Expect = 0.0
 Identities = 503/527 (95%), Gaps = 1/527 (0%)
 Strand=Plus/Plus

Query  42   aaaaaaa-aCAGAGATGGGTTTGGTTACAGATGAAGTGAGAGCTAGGGCAGAGAAATACA  100
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  7    AAAAAAACACAGAGATGGGTTTGGTTACAGATGAAGTGAGGGCTAGGGCAGAGAAATACA  66

Query  101  CAGGAGATGAGATATGCCGTGAGAAGACAAAGGAGTTTCTCAAGGAAGTTTCTATGCCTA  160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   CAGGAGATGAGATATGCCGTGAGAAGACAAAGGAGTTTCTCAAGGAAGTTTCTATGCCTA  126

Query  161  ATGGTTTATTGCCATTGAAGGACATTGAAGAAGTTGGTTACGACAGAGAGACAGGTATTG  220
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  127  ATGGTTTATTGCCATTGAAGGACATTGAAGAGGTTGGTTACGACAGAGAGACAGGTATTG  186

Query  221  TCTGGCTGAAGCAGAAGAAGAGCATCACCCACAAGTTTGAAGCCATTGGTAAACTTGTCT  280
            ||||||||||||||||||||||||||||||||||||||  ||  ||||| ||||||||||
Sbjct  187  TCTGGCTGAAGCAGAAGAAGAGCATCACCCACAAGTTTCTAGAAATTGGGAAACTTGTCT  246

Query  281  CTTACGCCACCGAGGTCATTGCACAGGTGGAGGTCGGAAAGATCAAGAAGCTTACCGGTG  340
            |||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct  247  CTTACGCCACCGAGGTCACTGCCCAGGTGGAGGTCGGAAAGATCAAGAAGCTCACCGGTG  306

Query  341  TTAAGGCCAAGGAGCTTCTTATTTGGGTCACTCTCAATGAGCTTGTCTTGGAGCAGCCGA  400
            ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |
Sbjct  307  TTAAGGCTAAGGAGCTTCTTATTTGGGTCACTCTCAATGAGCTTACCTTGGAGCAGCCAA  366

Query  401  CAAGTTCAGGGAAGATCAATTTCAGGACACCAACTGGTCTGTCCAGGACTTTCCCAGTGT  460
             ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  367  TAAGTTCAGGGAAGATCAATTTCAGGACACCAACAGGTTTGTCCAGGACTTTCCCAGTGT  426

Query  461  CTGCTTTCGTTGTTCCTGAAGTTGAGAAGCCTGCAACGGAGAAGAACAATGGAACCACTG  520
            | ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct  427  CGGCTTTTGTTGTTCCTGAGGTTGAGAAGCCTGCAATGGAGAAGAACAATGGAACCACTG  486

Query  521  AGGTCAAAGAAGCTGTTGCAGTCACAGATGCTTAGTCTCTCTAATCT  567
            |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  487  AGGTCAAAGAAGCTGTTGCAGTTACAGATGCTTAGTCTCTTTAATCT  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25656723141


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5