BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56590.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474818 jgi|Araly1|474818|fgenesh2_kg.1__4772__AT1G56590.1 2041 0.0
> Ahg474818 jgi|Araly1|474818|fgenesh2_kg.1__4772__AT1G56590.1
Length=1343
Score = 2041 bits (1105), Expect = 0.0
Identities = 1270/1350 (94%), Gaps = 9/1350 (1%)
Strand=Plus/Plus
Query 42 AGAGATGCTTCAATGTATCTTTCTCATCTCCGATTCTGGAGAGGTAATGCTAGAGAAGCA 101
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AGAGATGCTTCAATGTATATTCCTCATCTCCGATTCTGGAGAGGTGATGCTAGAGAAGCA 60
Query 102 GCTTACTGGTCATCGCGTTGATAGATCCATATGTGCTTGGTTCTGGGATCAATATATTTC 161
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct 61 GCTTACGGGTCATCGCGTTGATCGATCCATTTGTGCTTGGTTCTGGGATCAATCTATTTC 120
Query 162 TCAAGGCGATTCCTTTAAGGCACTTCCAGTGATTGCTTCACCAACACATTATCTATTTCA 221
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAGGCGATTCCTTTAAGTTACTTCCAGTGATTGCTTCACCAACACATTATCTATTTCA 180
Query 222 AATTGTTCGTGACGGAATTACGTTCTTAGCTTGTAGTCAAGTTGAAATGCCACCGTTGAT 281
||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AATCGTTCGCGATGGCATTACGTTATTAGCTTGTAGTCAAGTTGAAATGCCACCGTTGAT 240
Query 282 GGCAATCGAGTTCCTTTGCAGAGTTGCTGATGTTTTGTCTGAGTACCTTGGTGGGCTAAA 341
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 241 GGCAATCGAGTTTCTTTGCAGAGTTGCTGATGTTTTGTCTGATTACCTTGGTGGGTTAAA 300
Query 342 TGAAGATCTCATTAAGGATAATTTCATCATTGTCTATGAGCTTTTGGATGAGATGATCGA 401
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAAGATCTGGTTAAGGATAATTTCATCATTGTCTATGAGCTTTTGGATGAGATGATCGA 360
Query 402 TAATGGTTTCCCTCTCACAACAGAACCTAGTATCCTGAAGGAAATGATAGCTCCACCGAA 461
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| ||
Sbjct 361 TAATGGTTTCCCTCTCACAACAGAACCGAGCATCCTGAGGGAAATGATAGCTCCACCAAA 420
Query 462 TCTAGTCAGCAAAATGTTGAGTGTTGTAACGGGAAATGCTTCGAATGTTAGTGACACGCT 521
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 421 CCTAGTCAGCAAAATGTTGAGTGTTGTAACGGGAAATGCATCCAATGTTAGTGACACACT 480
Query 522 TCCGAGTGGGGCGGGCTCTTGTGTTCCTTGGCGACCGACAGATCCAAAGTACTCTAGCAA 581
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 CCCGAGTGGGGCTGGCTCTTGTGTTCCATGGCGACCGACAGATCCAAAGTACTCTAGCAA 540
Query 582 CGAAGTTTATGTCGACCTTGTTGAAGAGATGGATGCAATTGTAAACAGGGATGGAGAATT 641
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 CGAAGTTTATGTCGACCTCGTTGAAGAAATGGATGCAATTGTAAACAGGGATGGAGAATT 600
Query 642 GGTAAAATGCGAGATTTATGGCGAAGTCCAAATGAATTCTCAGCTCACTGGTTTTCCAGA 701
|||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 601 GGTAAAGTGCGAGATTTATGGCGAAGTCCAAATGAATTCCCAGCTCAGTGGTTTTCCAGA 660
Query 702 TTTGACATTGTCGTTTGCGAATCCATCAATCCTAGAAGACATGAGGTTTCACCCGTGTGT 761
||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||
Sbjct 661 TTTGACATTGTCGTTTGCGAATCCAGCCATCCTCGAAGACATAAGGTTTCACCCGTGTGT 720
Query 762 CCGCTACAGACCATGGGAATCTCATCAAGTTCTCTCCTTTGTCCCTCCAGATGGAGAGTT 821
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 CCGCTTCAGACCGTGGGAATCTCATCAAGTTCTCTCATTTGTCCCTCCAGATGGAGAGTT 780
Query 822 CAAGCTTATGAGTTACAGGGTGAAGAAGCTAAAGAACACACCTGTATATGTAAAACCTCA 881
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 781 CAAGCTCATGAGTTACAGGGTGAAGAAGCTGAAGAACACACCTGTATATGTAAAGCCTCA 840
Query 882 AATAACATCAGATTCGGGTACATGTCGAATTAGCGTGCTAGTGGGAATCCGAAGCGATCC 941
||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||
Sbjct 841 AATAACATCAGATTCGGGTACATGTCGAATTAGCGTGCTAGTGGGGATCAGAAACGACCC 900
Query 942 AGGGAAA-ACAATTGAGTCGATAACCTTGAGTTTCCAGCTTCCTCACTGTGTATCATCTG 1000
|||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 901 -GGGAAAGACGATTGAGTCCATAACCTTGAGTTTCCAGCTTCCTCATTGTGTTTCATCTG 959
Query 1001 CAGATCTCTCATCAAATCATGGAACTGTAACAATCCTCTCTAACAAGACATGTACATGGA 1060
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 CAGATCTCTCATCAAATCATGGAACTGTAACCATCCTCTCTAACAAGACATGTACATGGA 1019
Query 1061 CAATCGGGCGAATCCCAAAGGACAAAACTCCGTGTTTGTCGGGAACACTAGCGCTGGAAC 1120
||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||
Sbjct 1020 CAATCGGGCGAATCCCAAAAGACAAGACTCCTTGTTTGTCGGGAACACTAACGCTGGAAA 1079
Query 1121 CAGGGTT-AGAACGGCTTCACGTGTTTCCGACATTCAAACTCGGGTTTAAGATAATGGGC 1179
| ||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1080 C-GGGTTTAGAACGGCTTCATGTGTTTCCGACATTCAAACTCGGGTTCAAAATAATGGGC 1138
Query 1180 ATTGCTCTTTCTGGCCTAAGAATCGAGAAACTTGATCTTCAAACTATCCCTCCTCGTTTG 1239
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1139 ATTGCTCTTTCTGGCCTTAGAATCGAAAAACTTGATCTTCAAACTATCCCTCCTCGTCTG 1198
Query 1240 TACAAAGGGTTTCGTGCTCAGACACGCGCTGGTGAGTTCGATGTCAGGTTGTAGCTTTCT 1299
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1199 TACAAAGGGTTTCGTGCTCAGACACGCGCCGGTGAGTTTGATGTCAGATTGTAGCTTTCT 1258
Query 1300 AATACGGTCATGCCATGCCGGTCAAAAGTCTTGACTTTGGGCTCCTGTGAATTGTTTGTG 1359
|||||||||||| | | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1259 GGTACGGTCATGCC--G--G-TCAAAAGTCTTGACTTTGGGCACCTGTGAATTGTTTGTG 1313
Query 1360 CCAAATGGTTTTATACATCCAATGGTTTTT 1389
||||||||||||||||||||||||||||||
Sbjct 1314 CCAAATGGTTTTATACATCCAATGGTTTTT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5