BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56620.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924374 jgi|Araly1|924374|scaffold_105655.1 708 0.0
> Ahg924374 jgi|Araly1|924374|scaffold_105655.1
Length=561
Score = 708 bits (383), Expect = 0.0
Identities = 490/542 (90%), Gaps = 6/542 (1%)
Strand=Plus/Plus
Query 2 TGGGTTTTCTTCAACGAATCTCTTTGATGATCACATCTTTGATCATTCTGCACACTATCC 61
||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1 TGGATTTTCTTGAACGAATCTCTTTGATGATCACATCTTTGATCATCCTCCACACAATCC 60
Query 62 CATCGACCACATCCATCTCAATCACACCAGACGCCCCAACAATGATTCTAATCGATAGCA 121
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCGACCACATCGACCCCAATCACACCAGACGCCCCAACAATGATTCTAATCGATAGCA 120
Query 122 TATGTGTCAACACCAAGAACATGTATTATTGTGAGCAAA-GTATCATCTCGAAACTCGGT 180
|||| |||||||||| ||||||||||| ||||||||||| | |||||||||||||||| |
Sbjct 121 TATGCGTCAACACCAGGAACATGTATTTTTGTGAGCAAACG-ATCATCTCGAAACTCGAT 179
Query 181 AACCCCCATGCAGAAATCAAGACCATAGCTG-ATATCGCAGCGTTCAACGCAGTGTACCT 239
|||||||| ||||| ||||||| |||| | | | |||||||||||||||||||||||| |
Sbjct 180 AACCCCCACGCAGACATCAAGATCATATC-GAAAATCGCAGCGTTCAACGCAGTGTACAT 238
Query 240 CATCACAAGTGCAGGCAAT-TACATTAGAGATAAATTTATTCCCATAGCAGAGAACCCTC 298
|| ||||| ||||| ||| | |||||||||| |||||||||||| ||||||||| ||||
Sbjct 239 CACCACAACAGCAGGTAATCT-CATTAGAGATGAATTTATTCCCAAAGCAGAGAATCCTC 297
Query 299 TGGTCAAGAACCAGCTTGTTCTTTGCCTTGCGACGTACAGAGCTGTACAAAAGCTTCTCG 358
| ||||||| ||| ||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 298 TTGTCAAGACCCAACTTGTTCATTGCCAGGCAACGTACAGAGCTGTACAAAAGCTTCTCG 357
Query 359 AAGGTGCTTATCTGGCAGACCGCCGAGGTGATTATTCGGATATGAGACACTATCAATCAA 418
||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 358 AAGGTGCTTATATGGCACACTTACGCGGTGATTATTCGGATATGAGACACTATCAATCAA 417
Query 419 GTGTGCTTGGTATGCTCGATAATTGTAAAACAGATTTTGATTATATGGTGCGTACAAATT 478
|||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 418 GTGTGCTTGGTATGCTAGATAGCTGTAAAACAGATTTTGATCATATGGTGCGTACAAATT 477
Query 479 GGGGGGTTAGGTTAATGATCAATATCTCTTTATTAGCAACTCGTCAGCTCCCTGCACAAT 538
|| |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 478 GGTGGGTTAGGTTAACGATCAATATCTCTTTATTAGCAACTCGTCAGCTCCCTGGAAAAT 537
Query 539 AA 540
||
Sbjct 538 AA 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5