BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56630.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494726 jgi|Araly1|494726|fgenesh2_kg.8__542__AT5G42930.1 857 0.0
Ahg474822 jgi|Araly1|474822|fgenesh2_kg.1__4776__AT1G56630.1 715 0.0
> Ahg494726 jgi|Araly1|494726|fgenesh2_kg.8__542__AT5G42930.1
Length=931
Score = 857 bits (464), Expect = 0.0
Identities = 756/895 (84%), Gaps = 28/895 (3%)
Strand=Plus/Plus
Query 502 CAGATGGACTTATTGGGTTTCTACAGCTGTCCGAATGATTTTGATCAAAC-GAGGTCAAC 560
|||||||||||||| ||||||||||||||| ||||| || | |||| ||||||||
Sbjct 7 CAGATGGACTTATTAGGTTTCTACAGCTGTTGGAATGGTTACCA-GAAACAAAGGTCAAC 65
Query 561 AGAGGTGATTGTTATAAGGGACACAAAAG-ACA-ATCCGAACCTTATCGTCGTCAGTTTT 618
||| ||||||||||||| ||||| ||| ||| |||| ||||||||| | || |||||
Sbjct 66 AGAAGTGATTGTTATAAAAGACAC--AAGCACAGATCCAAACCTTATCATTGTTAGTTTC 123
Query 619 AGAGGAACCGATCCTTTCAACGCCGATGATTGGTGTACAGACCTT-GATCTCTCTTGGCA 677
||||| || |||||||| | |||||||||||||||||||| ||| |||||||| ||| |
Sbjct 124 AGAGGCACTGATCCTTTTGATGCCGATGATTGGTGTACAGA-CTTGGATCTCTCCTGGTA 182
Query 678 CAACGTTATGAATGTGGGAAAGATCCACGGCGGATTCATGAAAGCTTTAGGCCTTCCGAA 737
| | |||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 183 CGAGGTTAAGAATGTGGGAAAGATCCATGGCGGATTCATGAAAGCTTTAGGGCTTCAAAA 242
Query 738 AGAAGGATGGTATGAA-GAAATAAACTCTGACCAAACCCAAAATA-AAACAAGTCAACT- 794
|||||||||| | || ||| |||||| ||||||||||||||| | |||||| || | |
Sbjct 243 AGAAGGATGGCCT-AAGGAAGTAAACTTTGACCAAACCCAAAA-AGAAACAACTCTA-TA 299
Query 795 TGCATACTACACAATTTTA--CGTCAGTTAAAAGAGGTTTTCGAACAAAACCCAACATCC 852
|||||||||||| | ||| ||| | |||||||| || |||| |||||||| |||||
Sbjct 300 TGCATACTACAC--TGTTAGGCGTAACTTAAAAGAAATTCTCGACCAAAACCCGACATCT 357
Query 853 AAGTTTATCCTGTCCGGACATAGCCTAGGTGGAGCCCTAGCGATCCTGTTCACAGCCGTG 912
|| ||||| || ||||||||||||||||||| || |||| || || ||||| || |||
Sbjct 358 AAATTTATATTGACCGGACATAGCCTAGGTGGGGCTTTAGCTATTCTATTCACGGCTGTG 417
Query 913 TTAATTATGCATGATGAGAAGGAAATGTTGGAGAGACTTGAAGGAGTTTACACATTTGGG 972
||| | |||||||| ||| || ||||| | ||||| || ||||||||| ||||||||||
Sbjct 418 TTAGTCATGCATGAAGAGGAGCAAATGCTAGAGAGGCTAGAAGGAGTTAACACATTTGGA 477
Query 973 CAGCCACGCGTAGGAGACGAGGA-TTTCGG-TATTTATATGAAAGACAAGTT-AAAGGAG 1029
|||||||||||||| |||||||| ||| || |||| |||||||| ||| ||| ||
Sbjct 478 CAGCCACGCGTAGGCGACGAGGAGTTT-GGAAATTT-CATGAAAGATTCGTTGAAA-AAG 534
Query 1030 TTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGGTTGCCTTTT 1089
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTTGACGTGAAGTACGAAAGATATGTTTATTGCAACGACATGGTTCCTAGGTTGCCTTTC 594
Query 1090 GACGACAAGACACTCATGTTCAAACATTTTGGGG-GCTGCCTCTACTGTGACAGTTTCTA 1148
|||||||||||||||||||||||||| ||||||| | ||||| |||| ||||||||||||
Sbjct 595 GACGACAAGACACTCATGTTCAAACACTTTGGGGCG-TGCCTTTACTATGACAGTTTCTA 653
Query 1149 CAAAGGAAAGGTAGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATCTTTTGGGTTAT 1208
|||||||||||||| ||||| |||||||||||||||||||| ||| |||| ||||| |
Sbjct 654 TAAAGGAAAGGTAGAGGAAGAAGAGCCAAACAAAAACTACTTTAATCTCTTATGGGTCAC 713
Query 1209 ACCGAAGATAATAAACGCGGTGTGGGAGTTGATAAGGAGTTTCATCATATCTTGTTGGCA 1268
||| |||||||| || || |||||||||||||| | |||||| ||||| ||| |||| |
Sbjct 714 ACCAAAGATAATGAATGCAATGTGGGAGTTGATACGTAGTTTCGTCATACCTTATTGGAA 773
Query 1269 AGGTAGAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGACTTGTCGCATTGTTGAT 1328
|||| |||| | ||||||||||||||| |||| ||||||||| |||| |||||||||||
Sbjct 774 AGGTGGAGAGTTCAGAGAAGGATGGTTCTTGAGGTGTTTTAGGGTTGTTGCATTGTTGAT 833
Query 1329 TCCGGGACTT-CCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTTTGGG 1382
||||||| || |||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct 834 TCCGGGA-TTACCTGCTCACTTTCCTAATGAGTACATCAATGTTACTCTTTTGGG 887
> Ahg474822 jgi|Araly1|474822|fgenesh2_kg.1__4776__AT1G56630.1
Length=1056
Score = 715 bits (387), Expect = 0.0
Identities = 421/438 (96%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 1021 TTAAAGGAGTTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 1080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TTAAAGGAATTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 678
Query 1081 TTGCCTTTTGACGACAAGACACTCATGTTCAAACATTTTGGGGGCTGCCTCTACTGTGAC 1140
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 679 TTGCCTTTCGACGACAAGACACTCATGTTCAAACATTTTGGGGACTGCCTTTACTGTAAC 738
Query 1141 AGTTTCTACAAAGGAAAGGTAGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATCTTT 1200
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 739 AGTTTCTACAAAGGAAAGGTGGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATATTT 798
Query 1201 TGGGTTATACCGAAGATAATAAACGCGGTGTGGGAGTTGATAAGGAGTTTCATCATATCT 1260
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 799 TGGGTTATACCGAAGATATTAAACGCAGTGTGGGAGTTGATAAGGAGTTTCATCATATCT 858
Query 1261 TGTTGGCAAGGTAGAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGACTTGTCGCA 1320
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 859 TGTTGGCAAGGTAAAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGGCTTGTTGCA 918
Query 1321 TTGTTGATTCCGGGACTTCCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTTTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TTGTTGATTCCGGGACTTCCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTTTG 978
Query 1381 GGAAACTTTCCTCCTCAGGTACCTGATTCTCAAAATTTACCTGATGATGACCTCAATGTT 1440
||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||
Sbjct 979 GGAAACTTTCCTCCTCACGTACCCGATTCTCAAAATTTACATGCTGATGACCTCAATGTT 1038
Query 1441 GCCCTCTTGAGAAACTAA 1458
|||||||||||||||||
Sbjct 1039 TCCCTCTTGAGAAACTAA 1056
Score = 462 bits (250), Expect = 3e-129
Identities = 284/301 (94%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCAACCCAAAAATTATTTTGTTCTTGATCCGAGAGAAGCCACGGTTACGGATCTT 60
|||||||||||| |||| || |||||||| ||||||||||||||||| || | ||||||
Sbjct 1 ATGGTTCAACCCGAAAACTACTTTGTTCTGGATCCGAGAGAAGCCACCGTCATGGATCTG 60
Query 61 ATGCGTCTTCTCTTCTACTCGGATCTCGAGAATAGAAAGTTCGTTGATACTTCGGTAGAG 120
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATGCGGCTTCTCCTCTACTCGGATCTCGAGAATAGAAAGTTCGTTGATACTTCCGTAGAG 120
Query 121 AATCTTGAGAATCGTCTTTGCGAATTCAGGGGACGGTGGATCATTTTTGTATCCATCGTT 180
||||||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 121 AATCTTGAGAACCGTCTTTGCGAAATCGGGGGACGGTGGATTATTTTTGTATCCATCGTT 180
Query 181 GTTCAGAAACTCTTGATTATCCTCAGGAAACCTCTCTCGTTCTTGGGATTCGCTCTTGGC 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCAGAAACTCCTGATTATCCTCAGGAAACCTCTCTCGTTCTTGGGATTCGCTCTTGGC 240
Query 241 TTTTGGCTCAACCTTCCTTCTTCCAATGGTGGCTTCTTCAAGATATTCCTAAATCTTGTC 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTTTGGCTCAACCTTCCTTCTTCCAATGGTGGCTTCTTCAAGATTTTCCTAAATCTTGTC 300
Query 301 A 301
|
Sbjct 301 A 301
Score = 364 bits (197), Expect = 8e-100
Identities = 205/209 (98%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 538 GATTTTGATCAAACGAGGTCAACAGAGGTGATTGTTATAAGGGACACAAAAGACAATCCG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 304 GATTTTGATCAAACGAGGTCAACAGAGGTGATTGTTATAAGGGACACAAAAGAAAATTCG 363
Query 598 AACCTTATCGTCGTCAGTTTTAGAGGAACCGATCCTTTCAACGCCGATGATTGGTGTACA 657
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AACCTTATCATCGTCAGTTTTAGAGGAACCGATCCTTTCAACGCCGATGATTGGTGTACA 423
Query 658 GACCTTGATCTCTCTTGGCACAACGTTATGAATGTGGGAAAGATCCACGGCGGATTCATG 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 424 GACCTTGATCTCTCTTGGCACGACGTTATGAATGTGGGAAAGATCCACGGCGGATTCATG 483
Query 718 AAAGCTTTAGGCCTTCCGAAAGAAGGATG 746
|||||||||||||||||||||||||||||
Sbjct 484 AAAGCTTTAGGCCTTCCGAAAGAAGGATG 512
Score = 165 bits (89), Expect = 8e-40
Identities = 101/107 (94%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 875 GCCTAGGTGGAGCCCTAGCGATCCTGTTCACAGCCGTGTTAATTATGCATGATGAGAAGG 934
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 512 GCCTAGGTGGAGCCCTAGCGATCCTGTTCACAGCCGTATTAATGATGCATGATGAGAAGA 571
Query 935 AAATGTTGGAGAGACTTGAAGGAGTTTACACATTTGGGCAGCCACGC 981
||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 572 AAATGTTGGAGAGGCTTGAAGGAGTTTACACATTTGGTCAGCCTCGC 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5