BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56670.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474829 jgi|Araly1|474829|fgenesh2_kg.1__4783__AT1G56670.1 1757 0.0
> Ahg474829 jgi|Araly1|474829|fgenesh2_kg.1__4783__AT1G56670.1
Length=1173
Score = 1757 bits (951), Expect = 0.0
Identities = 1102/1176 (94%), Gaps = 6/1176 (1%)
Strand=Plus/Plus
Query 15 AATGGCTACTCTCTTTCTCTACTCTAACACATTTTCCTTCTTCTTTATTACACTCGTGTC 74
|||||| |||||||||||||||||||| ||||| ||| ||||||| ||||||| |||||
Sbjct 1 AATGGCCACTCTCTTTCTCTACTCTAATACATTCTCCATCTTCTTCGTTACACTGGTGTC 60
Query 75 GTTAGCTCTTCTAATTCTCCGGCAACCCTCTAG-GGCGGCGAGTTGTACAGCTCGGCCGG 133
|| ||||||| ||||||||||||||| || | |||||||||||||||| ||| |||||
Sbjct 61 ACTACCTCTTCTCATTCTCCGGCAACCCACT-GCGGCGGCGAGTTGTACAACTCCGCCGG 119
Query 134 TGATTTTTAACTTTGGAGATTCTAATTCAGATACAGGAGGACTTGTTGCTGGACTTGGTT 193
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TGATTTTTAACTTTGGAGATTCTAATTCAGACACAGGAGGACTTGTTGCTGGACTTGGTT 179
Query 194 ACCCCATTGGCTTCCCAAATGGACGCTTATTTTTCCGGCGATCTACCGGTCGTTTGTCCG 253
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 180 ACCCTGTTGGCTTCCCAAACGGACGCTTATTTTTCCGGCGATCCACCGGTCGTTTGTCTG 239
Query 254 ACGGACGTCTTCTCATCGATTTCCTATGTCAGAGTTTGAATACAAGTCTTTTGAGGCCAT 313
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 240 ACGGACGTCTTCTCATTGATTTTTTATGCCAGAGTTTGAATACAAGTCTTTTGAGGCCAT 299
Query 314 ACTTAGATTCATTGGGTAGAACAAGGTTTCAAAATGGTGCAAATTTTGCAATTGCTGGAT 373
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 300 ACTTAGATTCATTAGGTGGAACAAGGTTTCAAAATGGTGCAAATTTTGCAGTTGTTGGAT 359
Query 374 CCCCAACTCTTCCCAAAAACGTCCCTTTCTCGCTTAACATTCAGGTCAAGCAGTTCAGCC 433
|| | ||||| |||||||| |||||||||||||| ||||||||| ||| |||||||||||
Sbjct 360 CCTCTACTCTCCCCAAAAATGTCCCTTTCTCGCTCAACATTCAGCTCATGCAGTTCAGCC 419
Query 434 ATTTCAAATCCCGATCACTCGAGCTCGCTTCTAGTTCAAATTCATTAAAGGGCATGTTCA 493
||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 420 ATTTCAAATCCCGATCACTTGAGCTCGCATCTAGTACAAATTCATTAAAGGGCATGTTCA 479
Query 494 TAAGCAACAATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGACATTG 553
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAAGCAATGATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGACATTG 539
Query 554 CGCGTTCATTCGCTAGAGGCAACTCGTATTCTCAGACGGTTAAGTTGATTCCACAAATTA 613
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCATTCTTTCGCTAGAGGCAACTCGTATTCTCAGACGGTTAAGTTGATTCCACAAATTA 599
Query 614 TTACGGAAATAAAAAGCAGCATAAAGAGATTGTATGATGAAGGAGGAAGGAGATTCTGGA 673
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTACCGAGATAAAAAGCGGCATAAAGAGATTGTATGATGAAGGAGGAAGGAGATTCTGGA 659
Query 674 TTCACAACACTGGTCCATTGGGTTGTCTACCTCAAAAACTTTCTATGGTTAAGAGCAAAG 733
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 TTCACAACACCGGTCCATTGGGTTGTCTACCTCAAAAACTCTCTATGGTTAAGAGCAAAG 719
Query 734 ATCTCGACCAGCACGGTTGCTTAGTC-AGTTACAACTCGGCAGCAACTCTGTTTAACCAA 792
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 720 ATCTCGACCAGCACGGTTGCTTAG-CTAGTTACAACTCGGCAGCAAATCTGTTTAACCAA 778
Query 793 GGATTGGATCATATGTGTGAGGAGCTGAGGACCGAACT-ACGAGATGCCACCATAATCTA 851
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||
Sbjct 779 GGATTGGATCATATGTGTGAGGAGCTGAGGACCAAACTGA-GAGATGCCACCATAATATA 837
Query 852 TATTGACATATACGCTATCAAATACAGTCTTATTGCAAACTCCAACCAATACGGTTTTAA 911
||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 838 TATCGACAGATACGCTATCAAATACAATCTCATTGCAAACTCCAACCAATACGGTTTTGA 897
Query 912 GAGTCCGTTGATGGCGTGTTGTGGATACGGAGGGACTCCATACAACTACAATGTGAAGAT 971
||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 898 GAGACCGTTAATGGCGTGTTGCGGATACGGAGGGGCTCCATACAACTACAATGTGAACAT 957
Query 972 AACATGTGGGCACAAAGGCTCTAATGTATGTGAGGAAGGGTCGCGTTTCATAAGCTGGGA 1031
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 AACATGTGGGCACAAAGGCTCTAATGTATGTGAGGAAGGGTCGCGTTACATAAGCTGGGA 1017
Query 1032 TGGGATTCATTACACCGAGACAGCTAATGCCATTGTAGCCATGAAAGTTCTTTCAATGCA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGGGATTCATTACACCGAGACAGCTAATGCCATTGTAGCCATGAAAGTTCTTTCAATGCA 1077
Query 1092 TTACTCTAAGCCACCAACTCCGTTCCATTTCTTCTGCCGTCGCTAAGAACCAAATTTATT 1151
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 1078 TTACTCTAAGCCACCAACTCCGTTCGATTTCTTCTGCCGTCGCTAAGAACCAACTTTGTT 1137
Query 1152 ATTCTTTTGCTTATTTCTAACTTGGACGAttttttt 1187
|||||| ||||||||||||||||||| |||| ||||
Sbjct 1138 ATTCTTGTGCTTATTTCTAACTTGGAAGATTCTTTT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5