BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56690.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337864 jgi|Araly1|337864|fgenesh1_pg.C_scaffold_1004429 3206 0.0
Ahg471032 jgi|Araly1|471032|fgenesh2_kg.1__986__AT1G09410.1 99.0 1e-19
Ahg336411 jgi|Araly1|336411|fgenesh1_pg.C_scaffold_1002976 73.1 8e-12
> Ahg337864 jgi|Araly1|337864|fgenesh1_pg.C_scaffold_1004429
Length=2853
Score = 3206 bits (1736), Expect = 0.0
Identities = 1990/2114 (94%), Gaps = 12/2114 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCGTTTAAAGCTAATCTTACGCAGAACTTACTTGACAAGCACTGGAGTGAATTGC 60
|||||| |||||||| ||||||||| |||| | |||| |||||||||||||| |||
Sbjct 1 ATGAAGAGTTTAAAGTTAATCTTACACAGAGCGTACTCCACAAGCACTGGAGTCAATAAT 60
Query 61 AGTTTTGAGATCTCACGTCTCTCACGAATCGGGAAAATCAATGAAGCACGAAAGTTTTTC 120
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 61 AGTTTTGAGATCTCTCGTCTCTCACGAATCGGTCAAATCAATGAAGCTCGAAAGTTTTTC 120
Query 121 GATTCGTTACAG-TTTAAAGCAATCGGTTCATGGAACTCAATTGTATCTGGGTATTTCTC 179
|||||||||| | | ||||||||||||||| |||||||||||||| |||||||| ||| |
Sbjct 121 GATTCGTTAC-GCTATAAAGCAATCGGTTCCTGGAACTCAATTGTCTCTGGGTACTTCGC 179
Query 180 AAACGGGTTACCGAAAGAAGCACGCCAACTGTTCGACGAAATGTCTGAGAGAAATGTAGT 239
|||||| ||||||| ||||||||||||| ||||||| |||||| ||||||||||| ||||
Sbjct 180 AAACGGTTTACCGAGAGAAGCACGCCAAATGTTCGATGAAATGCCTGAGAGAAATATAGT 239
Query 240 TTCCTGGAACGGGTTGGTTTCAGGGTATATTAAGAATAGGATGATTGTAGAAGCTAGGAA 299
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 TTCTTGGAACGGGTTGGTTTCAGGGTATATTAAGAATAGGATGATTGAAGAAGCTAGGAA 299
Query 300 TGTGTTTGAGCTAATGCCTGAGAGGAATGTTGTGTCGTGGACCGCGATGGTTAAAGGTTA 359
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TGTGTTTGAGATAATGCCTGAGAGGAACGTTGTGTCGTGGACCGCGATGGTTAAAGGTTA 359
Query 360 CATGCAAGAAGGTATGGTTGGTGAAGCGGAGTCGCTGTTTTGGAGAATGCCTGAGAGGAA 419
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 360 TGTGCAAGAAGGTATGGTTGTTGAAGCGGAGTTGTTGTTTTGGAGAATGCCTGAGAGGAA 419
Query 420 TGAGGTTTCTTGGACTGTGATGTTTGGTGGTTTGATTGATGATGGACGTATTGATAAAGC 479
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||
Sbjct 420 TGAGGTTTCTTGGACTGTGATGTTTGGTGGTTTGATTGATGGTGGACGTATCGATGATGC 479
Query 480 AAGGAAGTTGTATGATATGATGCCTGTTAAAGATGTTGTAGCGAGTACTAATATGATTGG 539
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 480 GAGGAAGTTGTATGATATGATGCCGGGGAAAGATGTTGTAGCGAGTACTAATATGATTGG 539
Query 540 TGGGTTGTGTAGAGAAGGAAGAGTTGATGAGGCAAG-GTTGATTTTTGATGAGATGAGGG 598
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 540 TGGGTTGTGTAGAGAAGGAAGAGTGGATGAGGCAAGAG-AGATTTTTGATGAGATGAGGG 598
Query 599 AGAGGAATGTTG-TTACTTGGACTACGATGATTACTGGATACAGGCAGAATAATCGAGTG 657
||||||||| || ||||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct 599 AGAGGAATG-TGATTACTTGGACTACGATGATTACTGGGTACGGGCAGAATAAGCGAGTG 657
Query 658 GATGTTGCTAGGAAGTTGTTTGAAGTGATGCCGGAGAAGACTGAAGTTTCGTGGACTTCT 717
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 GATGTTGCTAGGAAGTTGTTTGAAGTGATGCCGGAGAAAACTGAAGTTTCGTGGACTTCT 717
Query 718 ATGCTTTTGGGGTATACTTTGAGTGGGAGAATTGAGGATGCTGAGGAGTTTTTTGAGGTG 777
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 ATGCTTTTGGGGTATACTTTGAGTGGGAGAATTGAGGATGCTGAGGAGTTCTTTGAGGTG 777
Query 778 ATGCCGATGAAGCCGGTTATTGCGTGTAATGCTATGATTGTTGGGTTTGGTGAGGTAGGA 837
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 ATGCCGATGAAGCCGGTTATTGCGTGTAATGCTATGATTGTTGGGTTGGGTGAGGTAGGA 837
Query 838 GAGATA-TCGAAAGCTAGGAGGGTTTTTGATCTAATGGAGGATAGGGATAATGCGACTTG 896
|||||| | |||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 838 GAGATAGT-GAAAGCGAGGAGGGTTTTTGATCAAATGGAGGATAGAGATAATGCGACTTG 896
Query 897 GCGAGGAATGATTAAAGCTTATGAAAGAAAAGGTTTTGAATTGGAGGCTCTTGATTTGTT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCGAGGAATGATTAAAGCTTATGAAAGAAAAGGTTTTGAATTGGAGGCTCTTGATTTGTT 956
Query 957 TGCTCAAATGCAGAAACAAGGAGTTAGACCGAGTTTTCCGTCTTTGATCAGTATTCTTTC 1016
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TGCTCAAATGCAGAGACAAGGAGTTAGACCGAGTTTTCCGTCTTTGATCAGCATTCTTTC 1016
Query 1017 GGTTTGTGCCACTTTAGCAAGTCTACAATATGGTAGACAGGTCCATGCTCATTTGGTGAG 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1017 GGTTTGTGCCACTTTAGCAAGTCTACAATATGGTAGGCAGGTCCATGCTCACTTGGTTAG 1076
Query 1077 ATGTCAGTTTGATGATGATGTCTATGTTGCCTCTGTTTTGATGACCATGTATGTCAAATG 1136
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATGTCAGTTTGATGGTGATGTGTATGTTGCCTCTGTTTTGATGACCATGTATGTCAAATG 1136
Query 1137 TGGTGAGCTTGTAAAAGCAAAGCTAGTATTCGACAGGTTTTCCTCAAAGGACATTATCAT 1196
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1137 CGGTGAGCTTGTAAAAGCAAAGCTAGTATTTGACAGGTTTCCCTCAAAGGACATTATCAT 1196
Query 1197 GTGGAATTCAATCATTTCTGGCTATGCGTCGCATGGTCTAGGAGAGGAAGCTCTTAAGAT 1256
||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||| |
Sbjct 1197 GTGGAATTCAATCATCTCTGGTTATGCGTCGCACGGTTTAGGAGAGGAAGCTCTTAAGGT 1256
Query 1257 TTTTCACGAGATGCCATCATCTGGTACCATGCCAAACAAAGTGACCTTAATTGCAATTCT 1316
||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTTCCATGAGATGCCATTGTCTGGTACCATGCCAAACAAAGTGACCTTAATTGCAATTCT 1316
Query 1317 GACAGCATGTAGCTATGCTGGAAAACTCGAGGAAGGGCTTGAGATATTTGAATCAATGGA 1376
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 GACAGCATGTAGCTATGGTGGAAAACTCGAAGAAGGGCTTGAGATATTTGAATCAATGGA 1376
Query 1377 ATCAAAGTTTTGCGTGACTCCAACGGTTGAGCATTATTCTTGCACGGTGGATATGCTTGG 1436
||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATCCAAGTATTGCGTGACACCAACGGTTGAGCATTATTCTTGCACGGTGGATATGCTTGG 1436
Query 1437 GCGTGCAGGACAGGTAGATAAGGCAATGGAGTTGATCGAA-AGTATGACTATTAAGCCAG 1495
||||||||| | ||||||||||||||||| |||||| || ||||||||||| |||||||
Sbjct 1437 ACGTGCAGGAAAAGTAGATAAGGCAATGGAATTGATC-AATAGTATGACTATAAAGCCAG 1495
Query 1496 ATGCTACAGTTTGGGGTGCTCTGTTAGGAGCGTGTAAAACTCACTCACGATTGGATTTAG 1555
||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||||
Sbjct 1496 ATGCTACAGTTTGGGGTGCTCTGTTGGGAGCGTGTAAAACTCACTCAAGACTAGATTTAG 1555
Query 1556 CTGAAGTTGCTGCAAAGAAACTTTTCGAGA-ATGAACCAGATAACGCTGGTACATACGTT 1614
| |||||||||||||||||||| ||||||| | |||||||| ||||||||| ||||| ||
Sbjct 1556 CCGAAGTTGCTGCAAAGAAACTCTTCGAGATA-GAACCAGAAAACGCTGGTCCATACATT 1614
Query 1615 TTGCTATCGAGCATAAATGCATCTCGATCCAAGTGGGGGGATGTTGCAGTAGTAAGAAAA 1674
|||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| || |||
Sbjct 1615 TTGCTATCAAGCATAAATGCATCTCGATCCAAATGGGGAGATGTTGCAGAAGTGAGGAAA 1674
Query 1675 AACATGAGGACAAACAATGTAAGTAAATTCCCTGGTTGTAGTTGGATTGAGGTAGGGAAG 1734
|||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1675 AACATGAGGACAAAGAACGTAAGTAAATTCCCTGGATGTAGCTGGATTGAGGTAGGGAAA 1734
Query 1735 AAAGTGCACATGTTCACTCGCGGAGGTATCAAAAACCATCCCGAGCAAGCGATGATACTA 1794
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1735 AAAGTGCACATGTTCACTCGCGGAGGTATCAGAAACCATCCCGAGCAAGCGATGATATTA 1794
Query 1795 ATGATGTTGGAGAAAACAGATGGATTATTAAGAGAAGCTGGTTATAGTCCTGATTGCAGC 1854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 ATGATGTTGGAGAAAACAGATGGATTATTAAGAGAAGCTGGTTATAGTCCTGATTGCAGT 1854
Query 1855 CATGTCTTACACGATGTAGACGAGGAAGAGAAAGTTGATAGTTTAAGCCGTCACAGTGAA 1914
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1855 CATGTCTTACACGATGTAGACGAGGAAGAGAAAGTTGATAGCTTAAGTCGTCACAGCGAG 1914
Query 1915 AGACTCGCGGTAGCTTATGGACTCTTAAAGCTACCCGAAGGAGTACCTATTCGAGTCATG 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AGACTCGCGGTAGCTTATGGACTCTTAAAGCTACCCGAAGGAGTACCTATTCGAGTCATG 1974
Query 1975 AAGAACCTTAGAGTCTGTGGAGATTGTCATGCCGCCATTAAACTCATTTCTAAAGTCACA 2034
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1975 AAGAACCTTAGAGTCTGTGGAGATTGCCATGCCGCCATTAAACTCATTTCTAAAGTTACA 2034
Query 2035 GAAAGAGAGATCATTCTAAGAGATGCAAACAGATTCCATCATTTCAACAATGGAGAGTGT 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GAAAGAGAGATCATTCTAAGAGATGCAAACAGATTCCATCATTTCAACAATGGAGAGTGT 2094
Query 2095 TCTTGTAGAGACTA 2108
||||||||||||||
Sbjct 2095 TCTTGTAGAGACTA 2108
> Ahg471032 jgi|Araly1|471032|fgenesh2_kg.1__986__AT1G09410.1
Length=1788
Score = 99.0 bits (53), Expect = 1e-19
Identities = 117/147 (80%), Gaps = 7/147 (5%)
Strand=Plus/Plus
Query 1974 GAAGAACCTTAGAGTCTGT-G-GAGA-TTGTCATGCCGCCATTAAACTCATTTCTAAAGT 2030
||| ||||||||||| ||| | || | ||| | || || || ||| | || ||||| ||
Sbjct 1644 GAAAAACCTTAGAGTTTGTAGTGATATTTGCCGCGCAGCAATAAAAATAATCTCTAAGGT 1703
Query 2031 CACAGA-AAGAGAGATCATTCTAAGAGATGCAAACAGATTCCATCATTTCA-ACAATGGA 2088
| ||| | | ||||||||||||||||||||||||||||||| ||| |||| | || |||
Sbjct 1704 GAAAGAGATG-GAGATCATTCTAAGAGATGCAAACAGATTCCGTCACTTCAGA-AACGGA 1761
Query 2089 GAGTGTTCTTGTAGAGACTACTGGTGA 2115
|||||||| |||| ||| || ||||||
Sbjct 1762 GAGTGTTCCTGTACAGATTATTGGTGA 1788
> Ahg336411 jgi|Araly1|336411|fgenesh1_pg.C_scaffold_1002976
Length=1761
Score = 73.1 bits (39), Expect = 8e-12
Identities = 56/64 (88%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 205 CAACTGTTCGACGAAATGTCTGAGAGAAATGTAGTTTCCTGGAACGGGT-TGGTTTCAGG 263
|||||||||||||||||||||||||||||||| ||||| |||| | | | || |||| ||
Sbjct 547 CAACTGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGA-CTGCTATGCTTTCTGG 605
Query 264 GTAT 267
||||
Sbjct 606 GTAT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5