BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56710.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474834 jgi|Araly1|474834|fgenesh2_kg.1__4788__AT1G56710.1 1997 0.0
> Ahg474834 jgi|Araly1|474834|fgenesh2_kg.1__4788__AT1G56710.1
Length=1461
Score = 1997 bits (1081), Expect = 0.0
Identities = 1268/1360 (93%), Gaps = 5/1360 (0%)
Strand=Plus/Plus
Query 8 AAAAATGTCATTACCTAATTCACTCTTCTATACATTTTTCTTGATCTTATTCTCAACGAT 67
||||||| |||||||||||||||||||||||||| | ||||| |||||||||||| ||||
Sbjct 1 AAAAATGGCATTACCTAATTCACTCTTCTATACAATCTTCTTCATCTTATTCTCATCGAT 60
Query 68 TCGAATTGCTCA-AAGCATATATTTAAGTCCATCACCGGCTCCAAATCCGGCTTACAATG 126
|| ||||||||| || ||| ||| |||| ||||||||||||||||||||||||||| |||
Sbjct 61 TCCAATTGCTCACAA-CATGTATCTAAGCCCATCACCGGCTCCAAATCCGGCTTACGATG 119
Query 127 ATAACGACAATATTGCGCCAACCGTCTTCGACGTGACTTCATTTGGAGCCATCGGCGATT 186
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 120 ATAACGACAGTATTGGGCCAACCGTCTTCGACGTGACTTCCTTTGGAGCCATCGGAGATT 179
Query 187 GCT-CGACCGACGACACGTCAGCATTCAAAATGGCATGGGACGCTGCATGTATGAGTACA 245
| | ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 180 G-TGCGACCGACGACACATCAGCATTCAAGATGGCATGGGACGTTGCATGTATGAGCACA 238
Query 246 GGGCCTAAGTCAGCCCTGCTTCTTGTCCCTTACACTTTCTGTTTCTTGGTTAAGCCAACC 305
||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 239 GGGTCTAAGTCAGCCCTGCTTCTTGTCCCTTACACCTTCTGTTTCTTGGTCAAGCCAACC 298
Query 306 ACCTTCAATGGTCCTTGCAGAACAAATCTTGTACTACAAATCGACGGGTTCATTGTATCG 365
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||| | |||
Sbjct 299 ACCTTCAATGGTCCTTGTAGAACCCACCTTGTGCTACAAATCGACGGGTTCATTCTGTCG 358
Query 366 CCCGATGGACCGAGGTCATGGCCATCGAACTACCAGAGGCAGTGGATGATGTTTTACAGA 425
|| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 359 CCGGATGGACCGAGGTCATGGCCGTCGAATTACCAGAGGCAATGGATGATGTTTTACAGA 418
Query 426 GTTAATGGATTATCAATTCAAGGCTCTGGTGTTATCAACGGCCGTGGTCAGAAATGGTGG 485
|| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 419 GTGAATGGATTATCAATTCAAGGCTCAGGTTTTATCAACGGCCGTGGCCAGAAATGGTGG 478
Query 486 AATCTTCCTTGCAAACCACACAAGGGCCTTAACGGAACGACTCAAACCGGTCCTTGTGAC 545
|| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 479 AACCTTCCTTGCAAACCTCACAAGGGCATTAACGGAACGACTCAACCCGGTCCTTGTGAC 538
Query 546 AGTCCAGTAGCGATTAGGTTATTTCAGAGCTCAAAAGTAAGAATCCAAGGGATTAACTTC 605
||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 539 AGTCCTGTAGCGATTAGGGTATTTCAGAGCTCAAAAGTGAGAATCCAAGGGCTTAACTTC 598
Query 606 ATGAACAGCGCTCAGTTTCATGTAAGGTTTGACAACTGCAGTGACGTCGTGGTTGATTCC 665
||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 599 ATGAACAGCGCCCAGTTCCATGTAAGGTTTGATAACTGCAGTGACGTAGTTGTTGATTCC 658
Query 666 GTGATAATCAAGGCACCAGCTTCTAGTCCTAACACTGATGGGATCCATATTGAGAATACA 725
|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 659 GTGACAATCAAGGCACCAGCTTCTAGTCCTAACACAGATGGGATCCACATTGAGAATACA 718
Query 726 CACAATGTTCAGATTCGCAATTCCATGATTTCCAACGGAGATGATTGTATTTCTATCGGA 785
|| || |||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 719 CATAACGTTCAGATTCGCAATTCCGTGATTTCCAACGGAGATGATTGTATTTCAATTGGA 778
Query 786 GCCGGCTGCTTTAATGTCGATATTAAGAATGTTACGTGCGGTCCAAGCCATGGGATTAGC 845
| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 779 GGCGGCTGCTTTAATGTCGATATTCAGAATGTTACGTGTGGTCCAAGCCATGGGATTAGC 838
Query 846 ATAGGTAGCCTCGGAGTCCACAACTCGCAGGCCTATGTCTCGAACATAACAGTGACAAAC 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATAGGTAGCCTCGGAGTCCACAACTCGCAGGCCTATGTCTCGAACATAACAGTGACAAAC 898
Query 906 TCAACCATATGGAACTCAGACAACGGTGTTCGGATCAAGACATGGCAAGGAGGGTCAGGC 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCAACCATATGGAACTCAGACAACGGTGTTCGGATCAAGACATGGCAAGGAGGGTCAGGC 958
Query 966 TCGGTTTCAAGAATTGTGTTCAGTAACATTTTGATGGTCAACGTTCGTAACCCTATAATG 1025
||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 959 TCGGTTTCAAGAATTGTGTACAGTAACATATTGATGGTGAACGTTCGTAACCCTATAATG 1018
Query 1026 ATAGACCAGTACTACTGTCAAACCAATAACTGTGCTAACCAAACCAGCGCAGTCATTATA 1085
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 ATAGACCAGTACTACTGCCAAACCAATAACTGTGCTAACCAAACCAGCGCAGTCATAATT 1078
Query 1086 AGCGATGTTCTCTATGCAAATATCAAAGGGACTTACGACCTGAGAAGCCCACCCATACAT 1145
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1079 AGCGATGTTCTGTATGCAAATATCAAAGGGACTTACGACCTGAGAAGCCCACCGATGCAT 1138
Query 1146 TTTGGTTGCAGCGACTCTGTCCCCTGTACTAACCTCACACTCACGGAAGTCGATCTGTTT 1205
||||||||||||||||||||||||||||| ||||| | |||| |||| || || ||||||
Sbjct 1139 TTTGGTTGCAGCGACTCTGTCCCCTGTACCAACCTGAGACTCGCGGATGTTGACCTGTTT 1198
Query 1206 CCTTCCAAAGGCCAGCATTTGGAAAACCCGTTCTGCTGGAACGCGTATGGAAGCATGAAG 1265
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1199 CCTTCCAAAGGCCAGCATTTGGAAAACCCGTTCTGCTGGAACGCATATGGAAGCACGCAG 1258
Query 1266 ATTACAGTACCACCTGTTTATTGTCTACTCGATGCACCTCCGGACTTCTAACAGAAAAAG 1325
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1259 ATTACAGTGCCACCTGTTTATTGTCTGCTTGATGCACCTCCGGACTTCTAACAGAAGAAG 1318
Query 1326 ATATGTTCATCGCAGTTCACCAACTTGTATTCAGATTCAG 1365
|| |||||| ||| ||||||||||||||||| |||||||
Sbjct 1319 ATGTGTTCAACGCTGTTCACCAACTTGTATTT-GATTCAG 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5