BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56720.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474837 jgi|Araly1|474837|fgenesh2_kg.1__4791__AT1G56720.2 2532 0.0
Ahg311987 jgi|Araly1|311987|fgenesh1_pm.C_scaffold_1000767 869 0.0
> Ahg474837 jgi|Araly1|474837|fgenesh2_kg.1__4791__AT1G56720.2
Length=2056
Score = 2532 bits (1371), Expect = 0.0
Identities = 1605/1715 (94%), Gaps = 27/1715 (2%)
Strand=Plus/Plus
Query 49 AGTTTAGGAAGAAATGGGAGGTGACTTGAAAAGCCAGCTATCTAGAGAGAGCCATGTGTT 108
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 356 AGTTTAGGAAAAAATGGGAGGTGACTTGAAAAGCCAGCTATCTAGAGAGAGTCATGTCTT 415
Query 109 TGGACTTAAGGTGTGGGAAGTAATTGGTATAGCTGTTGCATTGCTCATCATAGCT-ATCC 167
|||||||||||| |||||||||||||||||||||||||||||||| | ||||| | ||||
Sbjct 416 TGGACTTAAGGTTTGGGAAGTAATTGGTATAGCTGTTGCATTGCTGACCATAG-TCATCC 474
Query 168 TCTCTGTTCTTTCGTGTTGTCTTACTTCGAAAAAGAAATCAAGAAGATCGAAAACCGGTC 227
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 475 TCTCTGTTCTTTCGTTTTGTCTTACTTCGAAAAAGAAGTCAAGAAGATCGAAAACCGGTC 534
Query 228 TTCCGGTTATCCAAACTCCTCCGGTGGTCTCCAAAGAGATCAGAGAAGTGAGAGTTGAGC 287
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 535 TTCCCGTTATCCAAACTCCTCCGGTGGTCTCCAAGGAGATCAGAGAAGTGAGAGTTGAGC 594
Query 288 ATGTCTCAGCTAGTAACTTTGCTCCTGGTGAAGGCATTCTTCTAACAATTCAGGACAAAA 347
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 ATGTCTCAGCAAGTAACTTTGCTCCTGGTGAAGGCATTCTTCTTACAATTCAGGACAAAA 654
Query 348 ATAACAAAGACTCAGAAAAAGTCATGGTTCATTTGGATATGAGGAAGAAGAGAAGTAGTA 407
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACAACAAAGACTCAGAAAAAGTCATGGTTCATTTGGATATGAGGAAGAAGAGAAGTAGTA 714
Query 408 GTGGCCGGTCAGGGTCGTTTCATCATTTAGAGATCATAGATAAACATTCTGACTCTGCTG 467
||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 715 GTGGCCGGTCAGGCTCGTTTCATCATTTAGAGATCATAGATAAACATTCTGAGTCAGCCG 774
Query 468 AAGAAGTTTCTGCTTCTTCATCATTGTATAATATTGCAACTCCATCTCCATTGTCTGGTT 527
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 775 AAGAAGTTTCTGCTTCTTCATCATTGTATAACATTGCAACTCCATCACCATTGTCTGGTT 834
Query 528 TGCCTGAATCTCACCTTGGTTGGGGACACTGGTTTACTTTGAGAGATCTTGAAACAGCAA 587
||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 835 TGCCTGAGTCTCACCTTGGTTGGGGACACTGGTTTACACTCAGAGATCTTGAAGTAGCAA 894
Query 588 CTAACAGATTCTCTAAAG-AGAATGTTATAGGTGAAGGCGGTTACGGTGTTGTCTACAGA 646
|||| |||||||| |||| ||||||| || ||||||||||||||||| ||||||||||||
Sbjct 895 CTAATAGATTCTC-AAAGGAGAATGTGATTGGTGAAGGCGGTTACGGCGTTGTCTACAGA 953
Query 647 GGAGAGTTAATGAATGGAACTCCTGTTGCAGTTAAAAAGATTCTTAACCAGTTGGGACAA 706
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 GGAGAGTTGCTCAATGGAACTCCTGTTGCAGTTAAAAAGATTCTTAATCAGTTGGGACAA 1013
Query 707 GCTGAGAAAGAGTTTCGAGTCGAGGTTGATGCTATCGGTCATGTGCGGCACAAGAACTTG 766
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1014 GCTGAGAAAGAGTTTCGAGTCGAGGTTGATGCTATCGGTCATGTGCGTCACAAGAACTTG 1073
Query 767 GTTCGGCTTCTTGGTTACTGCATTGAAGGCACACACAGGATATTGGTTTACGAATATGTG 826
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1074 GTCCGGCTTCTTGGTTACTGCATTGAAGGCACACACAGGATATTGGTTTACGAGTATGTG 1133
Query 827 AATAATGGAAACTTAGAACAATGGCTTCATGGAGCAATGAGACAACATGGATATCTAACT 886
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1134 AATAATGGAAACTTAGAACAATGGCTTCACGGAGCAATGAGACAACATGGATATCTAACT 1193
Query 887 TGGGAAGCAAGGATGAAGGTTCT-GATCGGCACATCAAAAGCTCTTGCATATCTGCATGA 945
|||||||| || ||||||||||| | |||||||||| ||||||||||||||||| |||||
Sbjct 1194 TGGGAAGCTAGAATGAAGGTTCTCG-TCGGCACATCGAAAGCTCTTGCATATCTCCATGA 1252
Query 946 AGCAATTGAGCCAAAAGTAGTGCATAGAGACATCAAGTCAAGCAACATTCTGATCAATGA 1005
|||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 1253 AGCAATAGAGCCAAAAGTAGTGCACAGAGACATCAAGTCAAGCAACATACTAATCAACGA 1312
Query 1006 CGAATTCAACGCAAAGGTTTCAGATTTTGGCCTTGCTAAGTTGCTTGGTGCTGGAAAAAG 1065
||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1313 CGAATTCAATGCAAAGGTTTCAGATTTTGGCCTTGCAAAGTTGCTTGGCGCTGGGAAAAG 1372
Query 1066 CCATGTGACAACTCGAGTGATGGGAACATTTGGGTACGTTGCTCCTGAATATGCAAACTC 1125
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1373 CCATGTGACAACTCGAGTGATGGGAACATTTGGGTACGTTGCTCCCGAATATGCAAACAC 1432
Query 1126 AGGGTTGTTAAATGAAAAGAGTGATGTCTACAGCTTTGGTGTTGTTCTCTTAGAAGCAAT 1185
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1433 AGGGCTGTTAAATGAAAAGAGTGATGTCTACAGCTTCGGTGTTGTTCTCTTAGAAGCAAT 1492
Query 1186 CACAGGACGAGACCCTGTGGATTACGGACGTCCTGCTCATGAGGTGAATCTAGTGGACTG 1245
|||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||
Sbjct 1493 CACAGGACGAGATCCTGTGGATTATGGCCGTCCTGCTCATGAGGTGAACCTAGTAGACTG 1552
Query 1246 GTTGAAGATGATGGTTGGGACAAGACGATCAGAGGAAGTAGTGGATCCAAACATAGAAGT 1305
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GTTGAAGATGATGGTTGGAACGAGACGATCAGAGGAAGTAGTGGATCCAAACATAGAAGT 1612
Query 1306 GAAGCCACCAACAAGGTCACTGAAACGAGCTCTTTTGACGGCTCTAAGATGTGTTGATCC 1365
|||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct 1613 AAAGCCACCAACAAGGTCATTAAAACGAGCCCTTTTGACGGCTCTAAGATGCGTTGATCC 1672
Query 1366 AGATTCGGATAAGCGGCCGAAGATGAGCCAAGTTGTACGTATGCTTGAGTCTGAAGAATA 1425
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGATTCGGACAAACGGCCGAAAATGAGCCAAGTTGTACGTATGCTTGAGTCTGAAGAATA 1732
Query 1426 CCCCATTCCAAGAGAGGACCGAAGGCGTTCTAGAACGCGAGAAGGGAGTATGGAGATAAA 1485
||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1733 CCCAATTCCAAGAGAGGACCGAAGGCGTCCTAGAACGCGTGAAGGGAGTATGGAGATAAA 1792
Query 1486 CTCAGACACTGACATGAGTACTCCAGTTTCAAGATCACAGAGCAAGAGACAATAAT-T-- 1542
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1793 CTCAGACACTGACATGAGTACTCCAGTTTCACGATCACAGAGCAAGAGACAATAATCTGA 1852
Query 1543 -TA-T----CAATCTGCGTAAGCTTTCAACGCGTTTCATGATTATGAGCTATTCTTTGAA 1596
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1853 GTAATTTATCAATCTGCGTAAGCTTTCAACGCATTTCATGATTATGAGCTATTCTTTGAA 1912
Query 1597 CTTGTTCTTATGCATTTTCTGTTTGTTTGtttttttttGGTTTTGAATTGAGATGAGTAG 1656
||||||||| |||||||||||||| ||| |||| ||| | |||||||||||||||
Sbjct 1913 CTTGTTCTTTTGCATTTTCTGTTT-TTT-TTTTCTTT-G------AATTGAGATGAGTAG 1963
Query 1657 AGACCATAGAGGATTGTTTGTACATATGAACT-GGATTTGTGTTTAGAGCTCCTACATCA 1715
|| ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 1964 AGGCCATATAGGATTGTTTGTACATG-GAACTTGG-TTTGTATTTAGAGCTCCTACATCA 2021
Query 1716 AAATAATATATTGGTGTGTACAGTACTATTGCATC 1750
||||||||||||| ||||||||||| ||||| |||
Sbjct 2022 AAATAATATATTGTTGTGTACAGTATTATTGTATC 2056
> Ahg311987 jgi|Araly1|311987|fgenesh1_pm.C_scaffold_1000767
Length=1446
Score = 869 bits (470), Expect = 0.0
Identities = 819/984 (83%), Gaps = 38/984 (4%)
Strand=Plus/Plus
Query 480 CTTCTTCATCATTGTATAATATTGC-A-A-C-T--CCATCTCCAT-TGTCTGGTTTGCCT 532
||||||||||||||||| | || || | | | | ||||| || | | || ||||| |||
Sbjct 344 CTTCTTCATCATTGTATGAGATGGCTACACCATCACCATCACC-TCTTTCCGGTTTACCT 402
Query 533 GAATCTCACCTTGGTTGGGGACACTGGTTTACTTTGAGAGATCTTGAAACAGCAACTAAC 592
|| || || ||||| ||||| || ||||||||| ||||||||||||||| |||||| |||
Sbjct 403 GAGTCACATCTTGGATGGGGTCATTGGTTTACTCTGAGAGATCTTGAAATAGCAACAAAC 462
Query 593 AGATTCTCTAAA-GAGAATGTTATAGGTGAAGGCGGTTACGGTGTTGTCTACAGAGGAGA 651
|||||||| ||| || ||||| || |||||||| || || || |||| ||| |||||||
Sbjct 463 AGATTCTC-AAAGGAAAATGTGATTGGTGAAGGAGGATATGGAATTGTATACCGAGGAGA 521
Query 652 GTTAATGAATGGAACTCCTGTTGCAGTTAAAAAGATTCTTAACCAGTTGGGACAAGCTGA 711
||| | ||||| ||| ||| || || |||||||| || ||||| ||||||||||||||
Sbjct 522 GTTGGTCAATGGGTCTCATGTCGCCGTGAAAAAGATCCTGAACCACTTGGGACAAGCTGA 581
Query 712 GAAAGAGTTTCGAGTCGAGGTTGATGCTATCGGTCATGTGCGGCACAAGAACTTGGTTCG 771
|||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 582 GAAAGAGTTTAGAGTAGAGGTTGATGCTATTGGTCATGTGCGTCACAAGAACTTGGTACG 641
Query 772 GCTTCTTGGTTACTGCATTGAAGGCACACACAGGATATTGGTTTACGAATATGTGAATAA 831
|||||| || |||||||||||||||||| |||||||||||||||| || ||| |||| ||
Sbjct 642 GCTTCTAGGATACTGCATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAA 701
Query 832 TGGAAACTTAGAACAATGGCTTCATGGAGCAATGAGACAACATGGATATCTAACTTGGGA 891
||| ||| | ||| |||||||||| |||||||||| ||| || |||||||||||||||||
Sbjct 702 TGGGAACCTCGAAGAATGGCTTCACGGAGCAATGAAACATCACGGATATCTAACTTGGGA 761
Query 892 AGCAAGGATGAAGGTTCTGATC-GGCACATCAAAAGCTCTTGCATATCTGCATGAAGCAA 950
||| | ||||| |||| | | |||||||| || ||||| |||||||| || || ||||
Sbjct 762 AGCTCGAATGAAAATTCTCA-CTGGCACATCCAAGGCTCTCGCATATCTACACGAGGCAA 820
Query 951 TTGAGCCAAAAGTAGTGCATAGAGACATCAAGTCAAGCAACATTCT-GATCAATGAC-GA 1008
| || ||||||||||||||||||||||||||||||||||| || || |||| |||| ||
Sbjct 821 TCGAACCAAAAGTAGTGCATAGAGACATCAAGTCAAGCAATAT-CTTGATCGATGATAGA 879
Query 1009 ATTCAACGCAAAGGTTTCAGATTTTGGCCTTGCTAAGTTGCTTGGTGCTGGAAAAAGCCA 1068
|||||||||||| |||| |||||||||||||| ||||| ||||| | ||| ||||||||
Sbjct 880 -TTCAACGCAAAGATTTCGGATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCA 938
Query 1069 TGTGACAACTCGAGTGATGGGAACATTTGGGTACGTTGCTCCTGAATATGC-AA-ACTCA 1126
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || |
Sbjct 939 TGTGACTACTCGAGTCATGGGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATAC-C- 996
Query 1127 GGG-TTGTTAAATGAAAAGAGTGATGTCTACAGCTTTGGTGTTGTTC-TCTTAGAAGCAA 1184
|| || || ||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 997 GGACTT-TTGAATGAAAAGAGTGATGTGTACAGCTTTGGTGTC-TTGGTCTTAGAAGCAA 1054
Query 1185 TCACAGGACGAGACCCTGTGGATTACG-GACGTCCTGCTCATGAGGTGAATCTAGTGGAC 1243
| || ||| |||| ||||||||||||| | ||||||||| |||||||||||||||| ||
Sbjct 1055 TAACCGGAAGAGATCCTGTGGATTACGCG-CGTCCTGCTAATGAGGTGAATCTAGTTGAG 1113
Query 1244 TGGTTGAAGATGATGGTTGGGA-C-AAGACGATCAGAGGAAGT-AGTGGATCCAAACATA 1300
|||||||| |||||||| || | | |||| ||| ||| ||||| | || |||||||||||
Sbjct 1114 TGGTTGAAAATGATGGTAGG-ATCTAAGA-GATTAGAAGAAGTCATTG-ATCCAAACATA 1170
Query 1301 GAAGTGAAGCCACCAACAAG-GTCACTGAAACGAGCT-CTT-TTGACGGCTCTAAGATGT 1357
| || | |||| | || || | |||||||||||| | ||| || || || || |||||
Sbjct 1171 GCGGTTAGGCCAGCGACTAGAG-CACTGAAACGAG-TACTTCTT-ACAGCACTTAGATGC 1227
Query 1358 GTTGATCCAGATTCGGATAAGCGGCCGAAGATGAGCCAAGTTGTACGTATGCTTGAGTCT 1417
||||||| ||||| || ||| | || || |||||||||||||| |||||||| ||||||
Sbjct 1228 ATTGATCCTGATTCTGAAAAGAGACCTAAAATGAGCCAAGTTGTTCGTATGCTCGAGTCT 1287
Query 1418 GAAGAATACCCCATTCCAAGAGAG 1441
|| ||||| ||||| |||||||||
Sbjct 1288 GAGGAATATCCCATACCAAGAGAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5