BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G57540.1

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474839 jgi|Araly1|474839|fgenesh2_kg.1__4793__AT1G57540.3         508    1e-143


> Ahg474839 jgi|Araly1|474839|fgenesh2_kg.1__4793__AT1G57540.3
Length=378

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 305/320 (95%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  82   GAGAGAAATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAAGGAGATCTGATGAGATCAGA  141
            ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct  59   GAGGGAAATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAGGGAGATTTGATGAGATCTGA  118

Query  142  TGCTAAGCCATGTTCAAGACTGATGAAACAAACAGCTGCCATTTTCACTGTTGGTGGAGC  201
            ||| ||||||||||| || || |||| |||||||||||||||||||||||||||||||||
Sbjct  119  TGCCAAGCCATGTTCTAGGCTAATGAGACAAACAGCTGCCATTTTCACTGTTGGTGGAGC  178

Query  202  TCTTGGTTTCTGGGTTCTTTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAG  261
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TCTTGGCTTCTGGGTTCTCTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAG  238

Query  262  TCTGCGGTGGGCTGGGTGTGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCG  321
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  239  TCTACGGTGGGCTGGGTGCGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCG  298

Query  322  TCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCATATGATAACATCAAAACCCC  381
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  299  TCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCGTATGATCACATCAAAACCCC  358

Query  382  TCAAGCTTCACTCCCTTAAA  401
            ||||||||||||||||||||
Sbjct  359  TCAAGCTTCACTCCCTTAAA  378


 Score = 78.7 bits (42),  Expect = 4e-14
 Identities = 50/54 (93%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  1   GTCTTCTTCCGACAAGCTCGACGGCGACACAGCCAAAGAAACTACGCATCACCG  54
           ||||||||||| || |||| |||| |||||||||||||||||||||||||||||
Sbjct  6   GTCTTCTTCCGTCAGGCTCTACGGTGACACAGCCAAAGAAACTACGCATCACCG  59



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18619927432


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5