BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57560.1 Length=1073 Score E Sequences producing significant alignments: (Bits) Value Ahg314948 jgi|Araly1|314948|fgenesh1_pm.C_scaffold_1003728 1286 0.0 > Ahg314948 jgi|Araly1|314948|fgenesh1_pm.C_scaffold_1003728 Length=936 Score = 1286 bits (696), Expect = 0.0 Identities = 871/952 (91%), Gaps = 25/952 (3%) Strand=Plus/Plus Query 24 ATGAAGAGACATTCTTGTTGTTACAAACAAAAGCTGAGAAAAGGTCTTTGGTCTCCTGAA 83 |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1 ATGAAGAGACATTCTTGTGGTTACAAACAAAACCTGAGAAAAGGTCTCTGGTCGCCTGAA 60 Query 84 GAAGATGAGAAACTTCTCAATTACATTACCAAACATGGCCATGGTTGCTGGAGTTCTGTC 143 ||||| ||||| |||||||||||||| || ||| |||||||||||||||||||||||||| Sbjct 61 GAAGACGAGAAGCTTCTCAATTACATCACTAAAAATGGCCATGGTTGCTGGAGTTCTGTC 120 Query 144 CCTAAACTCGCAGGTCTCGAGAGATGTGGAAAGAGCTGTAGACTCAGATGGATCAATTAC 203 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 CCTAAACTCGCCGGTCTTGAGAGATGTGGAAAGAGCTGTAGACTCAGGTGGATCAATTAC 180 Query 204 TTAAGACCTGATTTAAAGAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAG 263 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTAAGACCTGATTTAAAAAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAG 240 Query 264 CTTCATGCTGTTCTTGGAAACAGATGGTCGCAAATTGCTGCGAGGCTTCCCGGGAGAACC 323 ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 241 CTTCATGCTGTTCTTGGAAACAGATGGTCACAAATTGCTGCAAGACTTCCCGGGAGAACC 300 Query 324 GACAACGAGATAAAGAAC-TTGTGGAATTCGTGCATTAAGAAGAAGCTGATGAAGAAAGG 382 || |||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 301 GATAACGAGATCAAGAACCTT-TGGAATTCTTGCATTAAGAAGAAGCTGATGAAGAAAGG 359 Query 383 CATTGACCCTATTACACATAAACCCCTCTCCGAGGTTGGTAAAGAAACAAACAGAAGCGA 442 ||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||| Sbjct 360 CATTGACCCTATTACACATCAACCTCTCTCCGAGGTTGGTAAAGACACAAACAAAAGCGA 419 Query 443 CAATAACAATTCCACAAGTTTTTCCTCAGAAACTAATCAAGACTTGTTTGTCAAGAAAAC 502 ||| |||||||||||||||| |||||| ||||||| |||||||| ||||||||| |||| Sbjct 420 CAACCACAATTCCACAAGTTTCTCCTCAAAAACTAACCAAGACTTCTTTGTCAAGCAAAC 479 Query 503 GTCTGATTTTGCCGAGTATTCTGCGTTTCAGAAAG-AAGAATCCAACTCTGTTTCACTCA 561 |||||||||| || ||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 480 GTCTGATTTTTCCAAGTATTCTGCGTTTCAGAA-GCAAGAATCCAACTCTGTTTCACTC- 537 Query 562 GA-AATTCGCTCTCTTCCATGATCCCAACGCAATTCAACATCGAC---GATGGTTCTGTC 617 || ||||||||||||||||||||||| ||||||||||||||| || |||||||||||| Sbjct 538 GACAATTCGCTCTCTTCCATGATCCCTACGCAATTCAACATCAACATCGATGGTTCTGTC 597 Query 618 TCAAATGCGGGTTTTGATACACAAGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCT 677 ||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 598 TCAAAAGCGCGTTTTGAGACACAGGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCT 657 Query 678 CCAAACAACACTTCAAGCACTGTCTCTGGACAGGATCATGTAAACGTGTCAGAGCCTAAT 737 ||| |||||||||||||||| | | | |||||||||| ||| ||||||||||| Sbjct 658 CCAGGCAACACTTCAAGCACTAT------A--G-ATCATGTAAAAGTGACAGAGCCTAAT 708 Query 738 TGGGAATCAAACAGTGGAACCACAAGCCACC-TCAACAATCCCGGTATGGAAGAAATGAA 796 |||||| ||||| || ||||||| ||||||| | | |||||||||| ||||||||||||| Sbjct 709 TGGGAAACAAACTGTCGAACCACGAGCCACCGTGA-CAATCCCGGTTTGGAAGAAATGAA 767 Query 797 ATGGTCCGAGGAGTACCTAAACGAATCGTTATTCTCTA-CCCAAGTTTACGTGAAATCAG 855 ||||||||| |||||||||||||||||||||||||||| |||| ||||| || ||||||| Sbjct 768 ATGGTCCGACGAGTACCTAAACGAATCGTTATTCTCTAGCCCA-GTTTATGTTAAATCAG 826 Query 856 AGACGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTAT 915 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 827 AGATGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTGT 886 Query 916 TCCCCAAGGATCTTCAGAGAATGGCCTTCTCTTTTGGTGGTCAGACCCTTTA 967 ||||||||||||||||||||||||| || ||||||||| ||||||||||| Sbjct 887 TCCCCAAGGATCTTCAGAGAATGGCATTTTCTTTTGGT---CAGACCCTTTA 935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39952817016 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5