BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57560.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314948 jgi|Araly1|314948|fgenesh1_pm.C_scaffold_1003728 1286 0.0
> Ahg314948 jgi|Araly1|314948|fgenesh1_pm.C_scaffold_1003728
Length=936
Score = 1286 bits (696), Expect = 0.0
Identities = 871/952 (91%), Gaps = 25/952 (3%)
Strand=Plus/Plus
Query 24 ATGAAGAGACATTCTTGTTGTTACAAACAAAAGCTGAGAAAAGGTCTTTGGTCTCCTGAA 83
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1 ATGAAGAGACATTCTTGTGGTTACAAACAAAACCTGAGAAAAGGTCTCTGGTCGCCTGAA 60
Query 84 GAAGATGAGAAACTTCTCAATTACATTACCAAACATGGCCATGGTTGCTGGAGTTCTGTC 143
||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 61 GAAGACGAGAAGCTTCTCAATTACATCACTAAAAATGGCCATGGTTGCTGGAGTTCTGTC 120
Query 144 CCTAAACTCGCAGGTCTCGAGAGATGTGGAAAGAGCTGTAGACTCAGATGGATCAATTAC 203
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCTAAACTCGCCGGTCTTGAGAGATGTGGAAAGAGCTGTAGACTCAGGTGGATCAATTAC 180
Query 204 TTAAGACCTGATTTAAAGAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAG 263
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAAGACCTGATTTAAAAAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAG 240
Query 264 CTTCATGCTGTTCTTGGAAACAGATGGTCGCAAATTGCTGCGAGGCTTCCCGGGAGAACC 323
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 241 CTTCATGCTGTTCTTGGAAACAGATGGTCACAAATTGCTGCAAGACTTCCCGGGAGAACC 300
Query 324 GACAACGAGATAAAGAAC-TTGTGGAATTCGTGCATTAAGAAGAAGCTGATGAAGAAAGG 382
|| |||||||| |||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 301 GATAACGAGATCAAGAACCTT-TGGAATTCTTGCATTAAGAAGAAGCTGATGAAGAAAGG 359
Query 383 CATTGACCCTATTACACATAAACCCCTCTCCGAGGTTGGTAAAGAAACAAACAGAAGCGA 442
||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||
Sbjct 360 CATTGACCCTATTACACATCAACCTCTCTCCGAGGTTGGTAAAGACACAAACAAAAGCGA 419
Query 443 CAATAACAATTCCACAAGTTTTTCCTCAGAAACTAATCAAGACTTGTTTGTCAAGAAAAC 502
||| |||||||||||||||| |||||| ||||||| |||||||| ||||||||| ||||
Sbjct 420 CAACCACAATTCCACAAGTTTCTCCTCAAAAACTAACCAAGACTTCTTTGTCAAGCAAAC 479
Query 503 GTCTGATTTTGCCGAGTATTCTGCGTTTCAGAAAG-AAGAATCCAACTCTGTTTCACTCA 561
|||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 480 GTCTGATTTTTCCAAGTATTCTGCGTTTCAGAA-GCAAGAATCCAACTCTGTTTCACTC- 537
Query 562 GA-AATTCGCTCTCTTCCATGATCCCAACGCAATTCAACATCGAC---GATGGTTCTGTC 617
|| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 538 GACAATTCGCTCTCTTCCATGATCCCTACGCAATTCAACATCAACATCGATGGTTCTGTC 597
Query 618 TCAAATGCGGGTTTTGATACACAAGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCT 677
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 TCAAAAGCGCGTTTTGAGACACAGGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCT 657
Query 678 CCAAACAACACTTCAAGCACTGTCTCTGGACAGGATCATGTAAACGTGTCAGAGCCTAAT 737
||| |||||||||||||||| | | | |||||||||| ||| |||||||||||
Sbjct 658 CCAGGCAACACTTCAAGCACTAT------A--G-ATCATGTAAAAGTGACAGAGCCTAAT 708
Query 738 TGGGAATCAAACAGTGGAACCACAAGCCACC-TCAACAATCCCGGTATGGAAGAAATGAA 796
|||||| ||||| || ||||||| ||||||| | | |||||||||| |||||||||||||
Sbjct 709 TGGGAAACAAACTGTCGAACCACGAGCCACCGTGA-CAATCCCGGTTTGGAAGAAATGAA 767
Query 797 ATGGTCCGAGGAGTACCTAAACGAATCGTTATTCTCTA-CCCAAGTTTACGTGAAATCAG 855
||||||||| |||||||||||||||||||||||||||| |||| ||||| || |||||||
Sbjct 768 ATGGTCCGACGAGTACCTAAACGAATCGTTATTCTCTAGCCCA-GTTTATGTTAAATCAG 826
Query 856 AGACGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTAT 915
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 827 AGATGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTGT 886
Query 916 TCCCCAAGGATCTTCAGAGAATGGCCTTCTCTTTTGGTGGTCAGACCCTTTA 967
||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 887 TCCCCAAGGATCTTCAGAGAATGGCATTTTCTTTTGGT---CAGACCCTTTA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5