BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57565.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474841 jgi|Araly1|474841|fgenesh2_kg.1__4795__AT1G57565.1 669 0.0
> Ahg474841 jgi|Araly1|474841|fgenesh2_kg.1__4795__AT1G57565.1
Length=525
Score = 669 bits (362), Expect = 0.0
Identities = 476/529 (90%), Gaps = 15/529 (3%)
Strand=Plus/Plus
Query 1 ATGAAAAAACCTGTTTATATGAAGGGAGGTCTTCACTGGCTAAGAAATGACGGAGCTATC 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAAAAACCTGTTTATATGAAGGGAGCTCTTCACTGGCTAAGAAATGACGGATCTATC 60
Query 61 GTAGCTTTCAACCCTGAAACAGAGAAAGCACGACTGA-TCTCGATCAGATTCCCCAAAGA 119
||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 61 GTAGCTTTCAACCCTAAAACAGAGAAAGCACGACTGATTC-CGATCAGATTCCCCAAAGA 119
Query 120 ACTTTGT-TCTAAAACGTTGTTCACAGCCGCAGATAACAATTTAATCTTGATATCGGCGA 178
||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 120 ACTTTGTGT-TAAAACGTTGTTCACAGCCGCAGATAATAATTTAACCTTGATATCGGCGA 178
Query 179 CGGAAGAAGTCT-TTTACGTTTATGCAGTAGAGAACATTCTTACTGATCCCAAGTGGGTC 237
|||||||| | | |||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 179 CGGAAGAA-TTTGTTTACGTTTATGCACTCGAGAACATTCTTAATGATCCCAAGTGGGTC 237
Query 238 GTCTTGAAGCAAATCCGGAACGGGGTACTGGACGAGAAGATGCTATATAGTTGGTACCCG 297
|| ||||| ||||||||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 238 CTCGTGAAGAAAATCCGGAACGGAATACTGGACGAGAAGAGGTTATATAGTTGGGGCCTA 297
Query 298 GAGGCTTACGATGGAAAGTGTTTAATGCTG-AGG-GA-GATATTGAAGAAGGACCATTAC 354
|||||||||||||||||||||||| || || ||| || || |||||||||||| |||||
Sbjct 298 GAGGCTTACGATGGAAAGTGTTTAGTGTTGAAGGAGACAATGTTGAAGAAGGACGATTAC 357
Query 355 AAGCAAGTGCTTCATGGGTACGACCTGAGAGCTAATAAGTGGGAAGTCATAGGTTCGATT 414
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAGCAAGTGCTTCGTGGGTACGACCTGAGAGCTAATAAGTGGGAAGTCATAGGTTCGATT 417
Query 415 CCAGGGTGGTACACTTCA-GCTCTAGACTTTTATCAGTTTACACCGTCTTTGTCTTCGGT 473
||| |||||| ||||| | ||| |||||||||||||||||| |||||| | |||||||||
Sbjct 418 CCAAGGTGGTGCACTT-ATGCTATAGACTTTTATCAGTTTAAACCGTCGTCGTCTTCGGT 476
Query 474 AATAGGACCTGATGCCAAGGAGGAGGAAG-AA-A--TATTGGCTTGTGA 518
||||||| ||||| ||| |||| |||| || | |||||||||||||
Sbjct 477 GATAGGACTTGATGACAAAGAGGGGGAATTAAGAGATATTGGCTTGTGA 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5