BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57570.1
Length=2306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907331 jgi|Araly1|907331|Al_scaffold_0002_412 1522 0.0
> Ahg907331 jgi|Araly1|907331|Al_scaffold_0002_412
Length=1767
Score = 1522 bits (824), Expect = 0.0
Identities = 1488/1801 (83%), Gaps = 75/1801 (4%)
Strand=Plus/Plus
Query 189 ACAAAAAATGGAAG-TGATAGGCAGTACAGAAGGCTAT-ACATTTGATGATGGATCCGAC 246
||||| | |||||| | ||||| || | | |||||| | ||||| |||||||| || |||
Sbjct 6 ACAAAGATTGGAAGCT-ATAGGTAGCAAAAAAGGCT-TCACATTCGATGATGGTTCTGAC 63
Query 247 CATGACGATGTTACCAAGATTTTTGTAGGAGGTGGTCGTCAAGGCATTCAT-TACATAGA 305
||||||| |||| ||||||||||||| |||||||||| |||||| |||| | ||||| ||
Sbjct 64 CATGACGGTGTTTCCAAGATTTTTGTTGGAGGTGGTCTTCAAGGAATTC-TGTACATGGA 122
Query 306 GTTTGAATATGTAAAAAATGGGCAGCTGGAATCAGGAGTACACTTG--GGT-GTTCGGTA 362
||||||||||||||| | ||| | |||| ||| ||| ||||||| ||| | ||| |
Sbjct 123 GTTTGAATATGTAAACAGTGGACTGCTGAAATTTGGA--ACACTTGTTGGTCG-TCGACA 179
Query 363 TAGAGGTTTCACAGAGACGTTTGAGATTAACCATCTCAACAATGAACATCTTGAATCTGT 422
||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 180 TAGAGGTTTCATAGAGACGTTTGAGATTAACCATCTCAACAATGAATATCTCGAATCTAT 239
Query 423 GGAGGG-TTACTATGACTACGGGTCGGGTTACATTCAAGGACTTCAATTCAAAACCAATT 481
||||| || ||| ||| | | || ||||||||||||||||||||||| ||||| ||||
Sbjct 240 AGAGGGCTT-CTACGACCATGAATCTGGTTACATTCAAGGACTTCAATTTAAAACAAATT 298
Query 482 TTAGGGTTTCCGAACTGATAGGATATGACGAGGGTA-CTAAGTTTTCACTTTCAGTTAAG 540
||||| |||| ||||| || |||||||| |||||| | |||||| ||||| |||| ||
Sbjct 299 TTAGGATTTCAGAACTAATTGGATATGATAAGGGTAAC-AAGTTTACACTTGCAGTCGAG 357
Query 541 GGAAAGAGA-ATCATTGGGTTTCATGGTTATATGAAGGAA-AGAAAAATCATCTCTCTTG 598
||||||| | ||||||||||| ||||| |||||| |||| ||||| || ||||| ||||
Sbjct 358 GGAAAGA-ATATCATTGGGTTCCATGGCCATATGA-GGAATAGAAATATTATCTCCCTTG 415
Query 599 GAGGATATTTCTCTTGGATTCATCCT-CGTAAAATGGAA-GCAAAAGGCAGCAAGGGAGG 656
||| ||||||| |||||| ||||||| | || || || |||||||| |||||||||||
Sbjct 416 GAGCATATTTCACTTGGAATCATCCTAC--AAGATTCAAAGCAAAAGGTAGCAAGGGAGG 473
Query 657 AAACCAGTGGGATGATGGAACCAATAATGATGGTGTGACAAAGATTCATGTACGAGGTGG 716
| |||||||||||||| | | ||||| || | ||||||||||| |||||||||||
Sbjct 474 CCATAAGTGGGATGATGGAGCTGACCATGATAGTATAACAAAGATTCAAGTACGAGGTGG 533
Query 717 TGTTGAAGGAATTCAATACATCAAGTTTGATTATGTCAGAAAAAGTGGACAA-CACATTA 775
| ||||||| ||||||| ||||| ||||||||||||| | | ||||| || | || |
Sbjct 534 TTTTGAAGGCGTTCAATATATCAAATTTGATTATGTCA-ATA--GTGGAAAAGCCCAAGA 590
Query 776 ATGGATCAATCCATGGTCTCTCGGGTAGCGGGTTCACACAAACGTTTGAGATTGACCATC 835
| ||||||||||||||| ||||||||||||| ||||| |||||||||||||| || |||
Sbjct 591 A-GGATCAATCCATGGTTTCTCGGGTAGCGGTTTCACGCAAACGTTTGAGATCAACTATC 649
Query 836 TCAACAATGAACATCTGGTATGTGTAGAAGGATACTACGACGATGAATCTGGTGTTATTC 895
| ||||||||||||| |||| ||| || || |||||||||| || |||||||||||| |
Sbjct 650 TTTACAATGAACATCTAGTATATGTTGAGGGTTACTACGACGTTGCATCTGGTGTTATCC 709
Query 896 AAGCCCTTCAATTCAAAACTAACATCAAGACTTCAGAGCTTCTTGGGTATAAAAAGGGTA 955
|| | |||||||| ||||||||| ||| |||||| ||| | || || ||| |||||||||
Sbjct 710 AATCACTTCAATTTAAAACTAACTTCAGGACTTCGGAGATGCTAGGATATGAAAAGGGTA 769
Query 956 AGAAATTTTCACTTGTAGACAAGAGGaaaaaaaTCGTTGGCTTTCATGGATATGCTGACA 1015
|||| |||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 770 AGAAGTTTTTACTTGGAGACAAGGGGAAAAAAATTGTTGGCTTTCATGGATATGCTGACA 829
Query 1016 AGAATCTCAACTCTCTGGGAGCATATTTCACAACGGTTTCTCC-T-A-CTAAATCGGAAT 1072
|| ||||| ||||||| ||||||||||||||||||||| | || | | | ||||| ||||
Sbjct 830 AGTATCTCTACTCTCTTGGAGCATATTTCACAACGGTT-C-CCATTAGC-AAATCAGAAT 886
Query 1073 G-CTATGGTAGTTCTAAAGGCATATATTGGGATGATGGTGTGTTT-GATTTCATAAGAAC 1130
| | ||| || || |||||||| ||||||||||||||| ||| || |||||||||
Sbjct 887 GTCGC-GGTGGTACTGGAGGCATATCTTGGGATGATGGTGT-TTTCGAGAGCATAAGAAC 944
Query 1131 GGTGTACGTTAGT-AGTAATGTCA-TGAACGTAAGGTA-TATTA-AGTTTCATTACTATA 1186
|||||| |||||| | |||| || | ||| ||| | | ||| | | ||||| ||| | |
Sbjct 945 GGTGTATGTTAGTTA-TAATACCACT-AACATAAAG-AGTATCACA-TTTCACTACCACA 1000
Query 1187 ACCGCGCAGTTGTAGTGCGTCAACACGGGTGG-AATAGTATAGTAGAAGAAG-ACGGAGA 1244
||||| ||||||||| ||| |||||||||||| || |||||| ||| |||| | | |||
Sbjct 1001 ACCGCACAGTTGTAGAGCGACAACACGGGTGGCAA-AGTATACAAGACGAAGGA-GAAGA 1058
Query 1245 AAAAGAGTTCGAGCTTGACTATCCAAATGAATTGATCACATCTGTGGAGGGGACTATG-A 1303
| ||||||| ||||| ||||||||||| ||| ||||||| | |||||||||||| || |
Sbjct 1059 AGAAGAGTTTGAGCTCGACTATCCAAACGAACTGATCACTTATGTGGAGGGGAC-ATTCA 1117
Query 1304 AAAGCTTTAGTCGTAGCGAAATAAGAATTTCGTCATTGACATTTAAAA-CATCAAAAGGG 1362
||| |||| | | |||||| | || || ||||||||| ||| ||| |||| |||||
Sbjct 1118 AAACCTTTGGGCCTAGCGATACGAGGGTTACGTCATTGAT-TTTGAAATCATCCGAAGGG 1176
Query 1363 AGAACCTCTCCAACAATTGGAA-TCGCGTCTGGTACCAAATTTCTGTT--AGCAAGCAAA 1419
||||||||||||||| |||||| | | |||||||||||||||| |||| || || ||||
Sbjct 1177 AGAACCTCTCCAACATTTGGAAAT-GTGTCTGGTACCAAATTTGTGTTGGAG-AA-CAAA 1233
Query 1420 GGATGTGCTGTGGTTGGGTTCTATGGAAGACATGATGATCGTGATCTTGTTGCTATTGGA 1479
||||||||||| ||||||||| ||||| |||| ||||||||||||| |||||||||||
Sbjct 1234 GGATGTGCTGTCGTTGGGTTCCATGGACGACACAATGATCGTGATCTCGTTGCTATTGGG 1293
Query 1480 GCATATTTTTCTCC-ATTGCCTCCTCCTACTGCGGAGAAACTACAAGCACAAGGTGGTAA 1538
||||||||| || || |||||||| ||||| |||||||||| | ||||||||||| |
Sbjct 1294 GCATATTTTAGTCAGATA-CCTCCTCCCACTGCAGAGAAACTACGACCACAAGGTGGTTA 1352
Query 1539 TCAAGGAGATTCATGGGACGATGGTGTTTTCGA-AGGTGTTAGAAAGTTGTACGTAGGAC 1597
|||||||| |||||||||||||||||||| ||| | ||||||||| | || |||||||
Sbjct 1353 TCAAGGAGGTTCATGGGACGATGGTGTTTACGATAAA-GTTAGAAAGATATATGTAGGAC 1411
Query 1598 AAGGTAAAAATTGTGTCGCATTCCTTAAGGTTGTGTACGATA-GCAACACTCAGGTTG-T 1655
|| | ||||| || |||||||||| ||| |||||||||||| | | |||| | || |
Sbjct 1412 AATGCGAAAATGGTATCGCATTCCTCAAGATTGTGTACGATAAGGAT-ACTC-GAATGGT 1469
Query 1656 TATTGGAGAAGATCATGGAAACAAAACACTATTTGA-AGTCAAGGAGTACGAGCTTGAAT 1714
||||||||| ||||||||||||||||||| ||| || | |||| |||| ||| | ||||
Sbjct 1470 TATTGGAGATGATCATGGAAACAAAACACCATTAGATA-TCAAAGAGTTTGAGGTCGAAT 1528
Query 1715 ATCCAAGTGAATACATTACAGCCGTGGATGGTTGTTACAATAAAGTAAATGGAACTGAAG 1774
||||||||||||||||||| |||||||||||||||||| | | ||||| ||||| |||||
Sbjct 1529 ATCCAAGTGAATACATTACGGCCGTGGATGGTTGTTACGACAGAGTAATTGGAAGTGAAG 1588
Query 1775 TCGAAGTTATAACCATGCTCAGGATTCAA-ACGAACAAACGAACATCTATACCCGTTGGA 1833
||||||||||||| ||||| ||| || || ||||||||||||||||||||||||||||||
Sbjct 1589 TCGAAGTTATAACTATGCTTAGGTTT-AAGACGAACAAACGAACATCTATACCCGTTGGA 1647
Query 1834 TGTGAATCTAACTCTAGCTTTGTACT-TAAAAAAGAAGGTTACAAAATTGTTGGATTCCA 1892
| ||||| || ||| |||||| |||| || ||| | ||| | ||||||||||||||| ||
Sbjct 1648 TTTGAATATAGCTCAAGCTTTCTACTCTACAAA-GCAGGCTGCAAAATTGTTGGATTTCA 1706
Query 1893 TGGGAAAGCAAGTAACATGATTAATCAGCTTGGAGTCCATGTCGTGCCCTTGACTGAGTG 1952
||| ||||||||||||||||||||||| || || |||||||| |||||||| || |||||
Sbjct 1707 TGGAAAAGCAAGTAACATGATTAATCAACTCGGGGTCCATGTTGTGCCCTTCACCGAGTG 1766
Query 1953 A 1953
|
Sbjct 1767 A 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86845758600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5