BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57610.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474846 jgi|Araly1|474846|fgenesh2_kg.1__4800__AT1G57610.2 1683 0.0
Ahg910664 jgi|Araly1|910664|Al_scaffold_0001_918 523 1e-147
Ahg943986 jgi|Araly1|943986|scaffold_700215.1 403 2e-111
> Ahg474846 jgi|Araly1|474846|fgenesh2_kg.1__4800__AT1G57610.2
Length=1247
Score = 1683 bits (911), Expect = 0.0
Identities = 1059/1128 (94%), Gaps = 19/1128 (2%)
Strand=Plus/Plus
Query 183 CTGATTTCATCGAAGAAACAAATCCGTGGGTCATTAGAAAAATCCGA-TTTTTTGATTAA 241
||| || ||| | |||||||||| |||||||||| | |||||||||| ||||||||||||
Sbjct 135 CTGGTTCCATAGGAGAAACAAATTCGTGGGTCATAATAAAAATCCGATTTTTTTGATTAA 194
Query 242 AAGATGTGGTCGGTGATGGGTTTAGTGAGACGTACGGCTATGTCCTCCACCGTGAATAAA 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 195 AAGATGTGGTCGGTGATGGGTTTAGTGAGACGTACGGCTATGTCATCCACCGTGAATAAA 254
Query 302 GCTTCTCCGGTTAGGTCTTTGCTTGGTGGGTTTAGATGTCTCAACGTTGAGTCTAAGGAA 361
|||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 255 TCTTCTCCGGTTAGGTCTTTGCTTGGTGGGTTTAGGTGTTTCAAC-----GT-T------ 302
Query 362 GAAGATGAGAAAAAGGATATGACTGTGTTAGAAGCTAAGAAGTTAATGAGATTAGTGAAT 421
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 303 GAAGATGAGAAAAAAGATATGACTGTGATGGAAGCTAAGAAGTTAATGAGATTAGTCAAT 362
Query 422 GTTGAAGATATGAAGAAGAAGCTTATTGGTATGGGTGATAAAGAAATGGTTACTTACACT 481
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 363 GTTGAAGATATGAAGAAGAAGCTTATTGGTATGAGTGATAAAGAAATGGTTTCTTATACT 422
Query 482 ACACTTATTGAAGCATCTCAAGGTTTAGGTATCGCTAGATCTCTTGATGAAGCTCATGCT 541
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 423 ACACTTATTGAATCATCTCAAGGTTTAGGTATCGCTAAATCTCTTGATGAAGCTCATGCT 482
Query 542 TTTGCTCGTGTTCTTGATGATGCTGGTGTTATTTTGATCTTTCGTGATAAAGTCTATCTT 601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 483 TTTGCTCGTGTTCTTGATGATGCTGGTGTTATTTTGATTTTTCGTGATAAAGTCTATCTT 542
Query 602 CATCCTCATAAGGTGGTGGATTTGATTAGAAAGGCAGTGCCTTTAGGTTTGAATCCAGAT 661
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 543 CATCCTCATAAGGTGGTGGATTTGATAAGAAAGGCAGTGCCTTTAGGTTTGAATCCAGAG 602
Query 662 GATGAGTTGATTAGAGAAGAGTTTGATAAGATGAGAAGTATGAAGGAAGAGATTGATGTG 721
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GATGATTTGATTAGAGAAGAGTTTGATAAGATGAGAAGTATGAAGGAAGAGATTGATGTG 662
Query 722 TTAGCTCATCAACAAGTGAGGAAGATTCTATGGGGTGGTCTTGGTTACTCAGTGGTTCAA 781
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 TTAGCTCATCAACAAGTGAGGAAGATTCTATGGGGTGGTCTTGGTTATTCAGTGGTTCAG 722
Query 782 ATTGGAATCTTTGTTAGGCTAACTTTTTGGGAGTTTTCTTGGGATGTGATGGAACCAATA 841
||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 723 ATTGGTATCTTTGTTAGGTTAACGTTTTGGGAGTTTTCTTGGGATGTGATGGAACCAATA 782
Query 842 ACGTTTTTCACTACAGCTACTGGGATTATTGTGGGTTATGCTTATTTCTTGATGACTTCT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 ACGTTTTTCACTACAGCTACTGGGATTATTGTGGGTTATGCTTATTTCTTGATGACTTCT 842
Query 902 AGAGATCCAACGTATCAAGATTTCATGAAAAGGTTGTTTCTTTCCAGGCAGAGGAAGTTG 961
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 843 AGAGACCCAACGTATCAAGATTTCATGAAAAGGTTGTTTCTTTCTAGGCAGAGGAAGTTG 902
Query 962 CTTAAGAGTCATAAGTTTGATGCTGAGAGGTTTAAAGAACTGGAGAACAAGTGGAAGATA 1021
|||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct 903 CTTAAGAGTCATAAGTTTGATGTTGAGAGGTTTAAGGAACTTGAGAATAAGTGGAAGATA 962
Query 1022 ACGTCTTGCTCTTCTTCTTCGTGCCACGCTAATGCATCGATTCGGAATCGTGTTGGTGTT 1081
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 963 ATGTCTTGCTCTTCTTCTTCGTGCCACGCAAATGCATCGATTCGGAATCGTGTTGGTCTT 1022
Query 1082 GATCTTGATTTGGAGGATTCTTTGCAGAGTCATCACAGAGATTGATT-GGTTCTAACCAT 1140
||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||
Sbjct 1023 GATCTTGATTTGGAGGATTCTTTGCAGAGTCGTCATAGAGATTGATTTGGATCTAACCAT 1082
Query 1141 TTTTCACTTTTGATGATATTACTTAACCAGATTTTCTTCTCTCTGGAGGTTGATCAAGTT 1200
| | | ||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1083 TCT-CT-TTTTGATTATATTACTTAACCAGATTTTCTTCTCTCTGGAGATTTATCAAGTT 1140
Query 1201 TGATTATTTGGTGTTGATTGATCCAAAGAGTTGGAGTAGTCATGGT-GATTTTTATTTGA 1259
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1141 TGATTATTTGGTGTTGATTGATCCAAAGAGTTGGAGTAGTCATGGGAGATTTTTATTTGA 1200
Query 1260 TAATCTTGAGCTACT-CTTATTTAAATCAGCTCATGTGTTAATCTTTT 1306
||||||||||||||| || || ||||| ||||||||| ||||||||||
Sbjct 1201 TAATCTTGAGCTACTGCT-ATCTAAATGAGCTCATGTTTTAATCTTTT 1247
> Ahg910664 jgi|Araly1|910664|Al_scaffold_0001_918
Length=882
Score = 523 bits (283), Expect = 1e-147
Identities = 522/633 (82%), Gaps = 34/633 (5%)
Strand=Plus/Plus
Query 392 GAAGCTAAGAAGTTAATGA-GATTAGTGAATGTTGAAGATATGAAGAAGAAGCTTATTGG 450
||||| |||||| |||||| | || |||||||||||||| ||||||||||||||| ||||
Sbjct 163 GAAGCGAAGAAGCTAATGAGGCTT-GTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGG 221
Query 451 TATGGGTGATAAAGAAATGGTTACTTACACTACACTTATT-GAAGCATCTCAAGGTTTAG 509
||| | ||||| ||| | || |||||||||||||| || ||||| |||||||| | |
Sbjct 222 TATAGCTGATAGAGATGTCGTCCCTTACACTACACTT-TTAGAAGCTTCTCAAGGAATGG 280
Query 510 GTATCGCTAGATCTCTTGATGAAGCTCATGCT-TTTGCTCGTGTTCTTGATGATGCTGGT 568
||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||| ||
Sbjct 281 GTATCGCTAGATCTCCTGATGAAGCTCAT-ATCTTTGCTCGTGTTCTTGACGATGCCGGC 339
Query 569 GTTATTTTGATCTTTCGTGATAAAGTCTATCTTCATCCTCATAAGGTGGTGGATTTGATT 628
||| | ||||||||||| |||||||||| |||||| || | |||||||||||| |||||
Sbjct 340 GTTGTCTTGATCTTTCGAGATAAAGTCTTTCTTCACCCAGACAAGGTGGTGGATCTGATT 399
Query 629 AGAAAG-GCAG-TGCCTTTAGG-TTTGAATCCAGATGATGAGT-TGAT-TAGAGAAGAGT 683
|| ||| || | ||||||| || ||||||||| || || | || || ||||| |
Sbjct 400 AG-AAGAGC-GATGCCTTT-GGAACAGAATCCAGAGGAAGA-TCAAATCAAG-GAAGAAT 454
Query 684 TTGATAAGA-TGAGAAGT-ATGAAGGAAGAGATTGATGTGTTAGCTCATCA-ACAAGTGA 740
| | || | | |||| | ||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 455 TCAACAA-ACTTAGAA-TCATGAAAGAAGAGATTGATGTGTTAGCGCAT-AGACAAGTGA 511
Query 741 GGAAGATTCTATGGGGTGGTCTTGGTTAC-TCAG-TGGTTCAAATTGGAATCTTTGTTAG 798
|||||||||| ||| | ||| || | ||| || | ||||||||||||| ||||| ||||
Sbjct 512 GGAAGATTCTTTGGTGCGGT-TTAGCTACTTC-GATGGTTCAAATTGGGCTCTTTTTTAG 569
Query 799 GCTAACTTTTTGGGAGTTTTCTTGGGATGTGATGGAACCAATAACGTTT-TTCACTACAG 857
|||||||| ||||| || || |||||||||||||||||||| || ||| ||| ||||||
Sbjct 570 ACTAACTTTCTGGGAATTCTCATGGGATGTGATGGAACCAATCAC-TTTCTTCGCTACAG 628
Query 858 CTACTGGGATTATTGTGGGTTATGCTTATTTCTTGATGACTTCTAGAGATCCAACGTATC 917
| ||||| || |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 629 CGACTGGAATCATTGTGGGTTATGCTTATTTCTTGATGACTTCGAGAGATCCGACATATC 688
Query 918 AAGATTTCATGAAAAGGTTGTTTCTT-TCCAGGCAGAGGAAGTTGCTT-AAGAGTCATAA 975
| ||||||||||| ||| | || ||| || || |||||||||||| || || ||||||||
Sbjct 689 AGGATTTCATGAAGAGGCTCTT-CTTGTCGAGACAGAGGAAGTTG-TTGAAAAGTCATAA 746
Query 976 GTTTGAT-GCTGAGAGGTTTAAAGAACTGGAGA 1007
||||||| | ||| |||||||| ||| ||||||
Sbjct 747 GTTTGATTG-TGATAGGTTTAAGGAATTGGAGA 778
> Ahg943986 jgi|Araly1|943986|scaffold_700215.1
Length=274
Score = 403 bits (218), Expect = 2e-111
Identities = 246/260 (95%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 873 TGGGTTATGCTTATTTCTTGATGACTTCTAGAGATCCAACGTATCAAGATTTCATGAAAA 932
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1 TGGGTTATGCTTATTTCTTTATGACTTCAAGAGACCCAACGTATCAAGATTTCATGAAAA 60
Query 933 GGTTGTTTCTTTCCAGGCAGAGGAAGTTGCTTAAGAGTCATAAGTTTGATGCTGAGAGGT 992
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AGTTGTTTCTTTCTAGGCAGAGGAAGTTGCTTAAGAGTCATAAGTTTGATGTTGAGAGGT 120
Query 993 TTAAAGAACTGGAGAACAAGTGGAAGATAACGTCTTGCTCTTCTTCTTCGTGCCACGCTA 1052
|||| ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 121 TTAAGGAACTTGAGAATAAGTGGAAGATAATGTCTTGCTCTTCATCTTCGTGCCACGCAA 180
Query 1053 ATGCATCGATTCGGAATCGTGTTGGTGTTGATCTTGATTTGGAGGATTCTTTGCAGAGTC 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGCATCGATTCGGAATCGTGTTGGTGTTGATCTTGATTTGGAGGATTCTTTGCAGAGTC 240
Query 1113 ATCACAGAGATTGATTGGTT 1132
||| |||||||||||||||
Sbjct 241 GTCATAGAGATTGATTGGTT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5