BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57620.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924398 jgi|Araly1|924398|scaffold_105679.1 1062 0.0
Ahg915005 jgi|Araly1|915005|Al_scaffold_0001_5259 195 7e-49
> Ahg924398 jgi|Araly1|924398|scaffold_105679.1
Length=679
Score = 1062 bits (575), Expect = 0.0
Identities = 628/654 (96%), Gaps = 1/654 (0%)
Strand=Plus/Plus
Query 133 AAAAATC-TCGATGAAGAAGAAGATGATTCCGACGACGATCTTACTCTCAGCTCTCATTT 191
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 10 AAAAAGCATCGATGAAGAAGAAGATGATTCCGACGACGCTCTTACTCTCAGCTCTCATTT 69
Query 192 TCTCTCTATCACCGATCTGTGAAGCTGTGTGGCTTACTGTACCTCACACCGGATCAAAGT 251
||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 70 TCTCTTTATCGCCGATCTGTGAAGCTGTGTGGCTTACCGTACCTCACACTGGATCAAAGT 129
Query 252 GCGTCTCCGAAGAAATCCAAAGCAACGTCATCGTTTTAGCTGATTACCTTGTTATCTCCG 311
| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 130 GTGTCTCTGAAGAAATCCAAAGCAACGTCGTCGTTTTAGCTGATTACCTTGTTATCTCCG 189
Query 312 AGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTTACAGCACCTTATGGCACCGTGT 371
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct 190 AGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTCACAGCACCTTATGGCAGCGTTT 249
Query 372 TACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAA 431
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 250 TACACCACAAGGAAAATACAACAAACGGTCAGTTTGCATTTACAACCCAAGAATCAGGAA 309
Query 432 CTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAGATTTTAGCATCA 491
| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 310 CCTACTTGGCCTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAGAGATTTTAGCATCA 369
Query 492 ACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAA 429
Query 552 AGATCGAGGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCATG 611
||||||||||||||||||| ||| |||||||||||||||||||||| ||||| || ||||
Sbjct 430 AGATCGAGGGTGTAGAGCTAGAGCTTAAGAAACTTGAAGGTGCAGTAGAAGCCATACATG 489
Query 612 AAAATCTGATTTACCTCAGAAACAGAGAAGCAGAGATGAGGATTGTGAGTGAAAAAACAA 671
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 490 AAAATTTAATTTACCTCAGAAACAGAGAAGCAGAAATGAGGATTGTGAGTGAAAAAACAA 549
Query 672 ACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTT 609
Query 732 TACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAGATCA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAGATCA 663
> Ahg915005 jgi|Araly1|915005|Al_scaffold_0001_5259
Length=447
Score = 195 bits (105), Expect = 7e-49
Identities = 121/128 (95%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 360 ATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCC 419
|||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 73 ATGGCA--GTG-TACACCACAAGGAAAATACAACAAACGGTCAGTTTGCATTTACAACCC 129
Query 420 AAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAG 479
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 130 AAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCCAAAAATCATGGTAACAAAG 189
Query 480 ATTTTAGC 487
||||||||
Sbjct 190 ATTTTAGC 197
Score = 69.4 bits (37), Expect = 5e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 517 AGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAG 559
||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 195 AGCCAAAGATTGGGACTCCATTGCTAGAAAAGAGAAGATCGAG 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5