BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57630.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915002 jgi|Araly1|915002|Al_scaffold_0001_5256 617 2e-176
Ahg915006 jgi|Araly1|915006|Al_scaffold_0001_5260 555 1e-157
Ahg905843 jgi|Araly1|905843|Al_scaffold_0003_2971 385 2e-106
Ahg896915 jgi|Araly1|896915|Al_scaffold_0005_881 224 5e-58
> Ahg915002 jgi|Araly1|915002|Al_scaffold_0001_5256
Length=2586
Score = 617 bits (334), Expect = 2e-176
Identities = 449/503 (89%), Gaps = 13/503 (3%)
Strand=Plus/Plus
Query 1 ATGGcttcttcttcttctttatctctttcatttccttcatcttctttGTCTCGAACCTGG 60
||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 1 ATGGCTTCTTCTTCTTCTTTATCGCTTTCATTTCCTTCTTCTTCTTTGTCTCAAACCTGG 60
Query 61 GATTACGATGTTTTTCCGAGCTTTCACGGGGAA-GATGTACGCAAAGCCTTTCTCAGCCA 119
|| ||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 61 GAACACGATGTCTTTCCCAGCTTCCA-TGGGAAGGATGTACGCAAAGCCTTTCTCAGCCA 119
Query 120 GATTCTCAAGAAGGAGTTTGGAAGAAAAGCAATCAACTTTTTTGTTGATCACGAGATGGA 179
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 120 CATTCTC---AAGGAGTTTGGAAGAAAAGCAATCAACTTTTTTGTTGATAACGAGATCAA 176
Query 180 GAGAGGAGAGTTCATCGGTCCTGTACTCAAACAGGCGATCAAAGGATCTAAGATTGCTCT 239
||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 177 GAGAGGAGAATTCATCGGTCCTGAACTCAAACGGGCGATCAAAGGATCTAAGATTGCTCT 236
Query 240 TGTCTTGCTCTCCAAGAATTACGCTTCTTCGTGGTGTTGTCTTGACGAATTGGTGGAGAT 299
||||||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||
Sbjct 237 TGTCTTGCTCTCCAAGAATTATGCTTCTTCGTCGTGGTGTCTTGACGAATTGGCGGAGAT 296
Query 300 CATGAAGAAAGAGTCGGGTCAAACGGTGATTACCATTTTCTATGAAGTTGATCCAAATGA 359
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 297 AATGAAGCAAGAGTCGGGTCAAACGGTGATTACCATTTTCTATGAAGTAGATCCAACGGA 356
Query 360 AGTAAAGAAGCAGACCGGAGATTTTGGGAAGGCCTTCAAAGAAACTTGTCAAGGTAAA-A 418
|| |||||||||| ||||| |||||||||| ||||||| |||||||| |||||||| |
Sbjct 357 TGTGAAGAAGCAGAAGGGAGACTTTGGGAAGGTCTTCAAAAAAACTTGTAAAGGTAAAGA 416
Query 419 CTGAGGAAAAGGTTCAGACATGGAGGAAAGCTTTGGAGGGTGTGGGTTTGGCCACAATCG 478
| |||| ||| || |||| ||||||||||||||||||| ||||| |||||||||
Sbjct 417 CA-AGGAGAAGATTAAGACTTGGAGGAAAGCTTTGGAGGATGTGG------CCACAATCG 469
Query 479 CAGGTTTTCATTCAAGCAACTGG 501
|||||| |||||||||||||||
Sbjct 470 CAGGTTACCATTCAAGCAACTGG 492
> Ahg915006 jgi|Araly1|915006|Al_scaffold_0001_5260
Length=2787
Score = 555 bits (300), Expect = 1e-157
Identities = 441/505 (87%), Gaps = 25/505 (5%)
Strand=Plus/Plus
Query 5 cttcttcttcttctttat-ctctttc-atttccttcatcttctttGTCTCGAACCTGGGA 62
||||||||||||| || | ||||||| | |||||| |||||||| ||||| || ||||||
Sbjct 11 CTTCTTCTTCTTC-TTCTGCTCTTTCGA-TTCCTTTATCTTCTTCGTCTCAAAACTGGGA 68
Query 63 TTACGATGTTTTTCCGAGCTTTCACGGGGAAGATGTACGCAAAGCCTTTCTCAGCCAGAT 122
|||||||| ||||| ||||| |||||| |||||||||||||| |||||||||||| |
Sbjct 69 GTACGATGTCTTTCCCAGCTTCCACGGGAAAGATGTACGCAAAACCTTTCTCAGCC--A- 125
Query 123 TCTCAA--GAAGGAGTTTGGAAGAAAAGCAATCAACTTTTTTGTTGATCACGAGATGGAG 180
| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 126 -C-CAACTGAAGGAGTTCGGAAGAAAAGCAATCAACTTTTTTGTTGATAACGAGATCAAG 183
Query 181 AGAGGAGAGTTCATCGGTCCTGTACTCAAACAGGCGATCAAAGGATCTAAGATTGCTCTT 240
|||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||
Sbjct 184 AGAGGAGAATTCATCGGTCCTGAACTCAAACGGGCAATCAAAGGATCTAAGATTGCTGTT 243
Query 241 GTCTTGCTCTCCAAGAATTACGCTTCTTCGTGGTGTTGTCTTGACGAATTGGTGGAGATC 300
||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 244 GTCTTGCTCTCCAAGAATTACGCTTCTTCTTCGTGGTGTCTTGACGAATTGGTGGAGATA 303
Query 301 ATGAAGAAAGAGTCGGGTCAAACGGTGATTACCATTTTCTATGAAGTTGATCCAA-ATGA 359
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||
Sbjct 304 ATGAAGAAAGAGTCGGGTCAAACGGTGATCACCATTTTCTATGAAGTAGATCCAACA-GA 362
Query 360 AGTAAAGAAGCAGACCGGAGATTTTGGGAAGGCCTTCAAAGAAACTTGTCAA-GGTAAAA 418
||||| ||||||| ||||| |||||||||| ||||||| ||||||| ||| ||||||
Sbjct 363 TGTAAAAAAGCAGAAGGGAGACTTTGGGAAGGTCTTCAAAAAAACTTG-CAAAGGTAAAG 421
Query 419 -CTGAGGAAAAGGTTCAGACATGGA-GGAAAGCTTTGGAGGGTGTGGGTTTGGCCACAAT 476
| |||| |||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 422 GCA-AGGAGAAGGTTCAGACATGGAAGGAA-GCTTTGGAGGGTGTGG------CCACAAT 473
Query 477 CGCAGGTTTTCATTCAAGCAACTGG 501
||| |||| |||||||||||||||
Sbjct 474 CGCGGGTTACCATTCAAGCAACTGG 498
> Ahg905843 jgi|Araly1|905843|Al_scaffold_0003_2971
Length=1170
Score = 385 bits (208), Expect = 2e-106
Identities = 393/480 (82%), Gaps = 22/480 (5%)
Strand=Plus/Plus
Query 31 tttccttcatcttctttGTCTCGAACCTGGGATTACGATGTTTTTCCGAGCTTTCACGGG 90
||| |||| ||||||| |||||||| ||||||| || |||| ||||||||||| ||||||
Sbjct 5 TTT-CTTCTTCTTCTTCGTCTCGAAACTGGGATCACAATGTCTTTCCGAGCTTCCACGGG 63
Query 91 GAAGATGTACGCAAA-GCCTTTCTCAGCCAGATTCTCAAGAAGGAGTTTGGAAGAAAAGC 149
|| ||||||||| ||| ||||||| || |||| || || ||||| || ||||
Sbjct 64 CCGGACGTACGCAAAGGCC-TTCTCAGTCACCTTCT--AG-AGAAGTTTAAAATCAAAGG 119
Query 150 AAT-CAACTTTTTTGTTGATCACGAGATGGA-GAGAGGAGAGTTC-ATCGGTCCTGTACT 206
||| ||| | || | ||| ||||||| | ||||||||| || |||||||||| |||
Sbjct 120 AATCCAA-TCATTCATCGATAACGAGAT-CAGGAGAGGAGA-ATCTATCGGTCCTGAACT 176
Query 207 CAAACAGGCGATCAAAGGATCTAAGATTGCTCTTGTCTTGCTCTCCAAGAATTACGCTTC 266
||||| ||| |||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 177 CAAACGGGCAATCAAAGGATCTAAGATTGCACTCGTCTTGCTCTCCAAAAACTACGCTTC 236
Query 267 TTCGTGGTGTTGTCTTGACGAATTGGTGGAGATCATGAAGAAAGAGTCGGGTCAAACGGT 326
||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 237 TTCGTCGTGGTGTCTTGACGAATTGGTGGAGATCATGAACAAAGAGTTGGGTCAAACTGT 296
Query 327 GATTACCATTTTCTATGAAGTTGATCCAAATGAAGTAAAGAAGCAGACCGGAGATTTTGG 386
|| |||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||
Sbjct 297 AATGACCATTTTCTATGATGTTGATCCAACGGAAGTTAAGAACCAGACCGGAGTTTTTGG 356
Query 387 GAAGGCCTTCAAAGAAACTTGTCAAGGTAAAA-CTGAGGAAAAGGTTCAGACATGGAGGA 445
||||| ||| |||||||||| |||| |||| | ||||| ||| || | || ||||| |
Sbjct 357 GAAGGTCTTTGGAGAAACTTGT-AAGGGAAAAACAGAGGAGAAGATTGATACGTGGAG-A 414
Query 446 AA-GCTTTGGAGGGTGTGGGTTTGGCCACAATCGCAGGTTTTCATTCAAGCAACTGGTTC 504
|| |||||||||||||| | |||||||||| |||| |||| ||||||||| |||
Sbjct 415 AATGCTTTGGAGGGTGTAG------CCACAATCGCTGGTTACCATTTAAGCAACTGTTTC 468
> Ahg896915 jgi|Araly1|896915|Al_scaffold_0005_881
Length=3243
Score = 224 bits (121), Expect = 5e-58
Identities = 320/411 (78%), Gaps = 34/411 (8%)
Strand=Plus/Plus
Query 9 ttcttcttctttatct-ctt--tca-tttccttcatcttctttGTCTCGA-ACCTGGGAT 63
|||||||||| |||| ||| ||| ||| || ||||| | | ||||| | | || |||
Sbjct 99 TTCTTCTTCTGCATCTCCTTCATCAGTTT-CTCCATCTACGTCGTCTC-ATAACT-GGA- 154
Query 64 TAC--GATGTTTTTCCGAGCTTTCACGGGGAAGATGTACGCA-AAGCCTTTCTCAGCCAG 120
||| || || ||||||||||| | |||||||||||| |||| || |||||| || ||
Sbjct 155 TACATGAAGTCTTTCCGAGCTTCCGCGGGGAAGATGTCCGCAGAA-ACTTTCTTAGTCAT 213
Query 121 ATTCTCAAGAAGGAGTTTGGA-AGAAAAGCAAT--CAACTTTTTTGTTGATCACGAGATG 177
| | |||| || |||||| | ||||| | ||| |||| || |||||| | |||||
Sbjct 214 A-T-TCAA-AAAGAGTTT-CAGAGAAAGGGAATCACAAC--ATTCGTTGATAATGAGATC 267
Query 178 GAGAGAGGAGAGTTCATCGGTCCTGTACTCAAACAGGCGATCAAAGGATCTAAGATTGCT 237
|||||||||| | ||| |||||| ||||| ||| ||||| | |||||||||||| ||
Sbjct 268 AAGAGAGGAGAATCCATTGGTCCTAAACTCATACATGCGATTAGAGGATCTAAGATCGCG 327
Query 238 CTTGTCTTGCTCTCCAAGAATTACGCTTCTTCGTGGTGTTGTCTTGACGAATTGGTGGAG 297
|| |||||||| || ||||| || |||||||| | ||| |||||||||||||||||||||
Sbjct 328 CTCGTCTTGCTTTCTAAGAACTATGCTTCTTCATCGTGGTGTCTTGACGAATTGGTGGAG 387
Query 298 ATCATGAAG---AAAGA-G--TCGGGTCAAACGGTGATTACC-ATTTTCTATGAAG-TTG 349
||||||||| ||||| | | ||||||||| ||| || || ||||||||| ||| |||
Sbjct 388 ATCATGAAGTGCAAAGAAGAATTGGGTCAAACAGTG-TTGCCTATTTTCTAT-AAGATTG 445
Query 350 ATCCAAATGAAGTAAAGAAGCAGACCGGAGATTTTGGGAAG-GCCTTCAAA 399
||||| ||| || ||||||| |||||| | ||||||| | || ||||||
Sbjct 446 ATCCATCTGATGTTAAGAAGCTCACCGGAAAATTTGGGA-GTGCTTTCAAA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5