BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57650.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915002 jgi|Araly1|915002|Al_scaffold_0001_5256 1110 0.0
Ahg915006 jgi|Araly1|915006|Al_scaffold_0001_5260 824 0.0
Ahg891927 jgi|Araly1|891927|Al_scaffold_0007_3913 161 2e-38
Ahg497514 jgi|Araly1|497514|fgenesh2_kg.686__1__AT5G38350.1 159 6e-38
Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919 158 2e-37
Ahg891936 jgi|Araly1|891936|Al_scaffold_0007_3922 154 3e-36
> Ahg915002 jgi|Araly1|915002|Al_scaffold_0001_5256
Length=2586
Score = 1110 bits (601), Expect = 0.0
Identities = 884/1015 (87%), Gaps = 41/1015 (4%)
Strand=Plus/Plus
Query 228 TGATGAGGATCTTCAAATCTTCTGCAAGTATGCTTTTAACCAAAAGACCCCTGAAGATGG 287
|||||||| ||||||||| ||||||| |||||||||| |||||| | ||| |||| ||
Sbjct 1068 TGATGAGGCTCTTCAAATGTTCTGCATGTATGCTTTTGGTCAAAAGTCTCCTAAAGACGG 1127
Query 288 TTTCGATGAACTAGCTCGTGAAATTACATACCATGTCGGTGAACTTCCGTTAGGACTAAA 347
||| ||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct 1128 TTTTTATGAACTTGCTCGTGAAATTACATATCTTGTCGGTGAACTTCCTTTAGGACTAAG 1187
Query 348 GGTTATTGGATCCCACTTTCGTGGATTGTCCAAGGAGCAGTGGCCAATGGAAGTATCAAG 407
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1188 GGTTATTGGATCCCACTTTCGTGGATTGTCCAAGGAGCAGTGGTCAATGGAAATATCAAG 1247
Query 408 GTTAAGGACGT-ACCGTAATGGAGATATTGAGCGCATTTTGAAGTTCAGTTATGATGCTT 466
||||||||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1248 GTTAAGGAC-TAACCTTGATGGAGATATTGAGAGCATTTTGAAGTTCAGTTTTGATGCTT 1306
Query 467 TATGTGATGAAGATAAAGATTTATTCCTTCATATAGCTTGCTTTTTCAA-CATGGAAAAA 525
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1307 TATGTGATGAAGATAAAGATTTATTCCTTCATATAGCTTGTTTTTTCAACCA-CGAAAAT 1365
Query 526 AT-AACGAAAGTGA-AAGAACTTT-TTGGCCACAGATTCAAGGATTTGAGACAAAGCCTT 582
|| ||| ||| | | ||||| ||| ||||||| ||||||||||||||||| ||||| |||
Sbjct 1366 ATAAAC-AAA-TTAGAAGAA-TTTATTGGCCAAAGATTCAAGGATTTGAGTCAAAGGCTT 1422
Query 583 CACATTTTAGA-GATGAAATCTCTTATATCTATTGAACATACTGATCTTGAAGATTCCGA 641
|| ||||||| || ||||||||| |||||||||| | | | | || || | || ||
Sbjct 1423 TACGTTTTAGAGGA-GAAATCTCTCATATCTATTG-A-A-A-T-AT-TT---G-TT--GA 1469
Query 642 GTATTATGAGTCCATAAACATGCGTAACTTGCTGGTCCAACTAGGTCAAGAAATCGTCCG 701
|| | ||||| ||||| |||| || ||||||| |||||||||| |||||||||||||
Sbjct 1470 ATA-TGTGAGT--ATAAAAATGCACAATTTGCTGGCCCAACTAGGTAAAGAAATCGTCCG 1526
Query 702 TAAAGAATCCGTTCTTGAGCCTGGTCAACGCCGATTTTTGATTGATTATAAAGATATTTG 761
|||||||| | || ||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 1527 TAAAGAAT-C--TCGTGAGCCTGGGCAACGCCAATTTTTGTTTGATTATAAAGATATTTG 1583
Query 762 TGCAGTAGTCTCTGGTCATACAAC-AATTACTGGAAGTGTTGTAGGCATAGACTCCAAGA 820
|| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 1584 TGAAGTAGTCTCTGGTTATACAACTAA-TACTGGAAGTGTTGTAGGCATAGACTCCAATT 1642
Query 821 ATTGGTTAAGTATAACTGAGAAATCCTTTAAAGGAATGTCTAATCTCCAGTTCTTAAGA- 879
|| |||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1643 ATGGGTTAAATATAACTGAGAAAGCCTTTGAAGGAATGCCTAATCTCCAGTTCTTAAGAG 1702
Query 880 --GTCAAAAACGATTTAT-ATCATCCAAACATTATATCTTCTCCGGGACCTCTGACTTTT 936
||| | || |||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1703 TCGTCGTATACAATTT-TGATCATCCAAACATTATATCTTCTTCGGGACCTCTGACTTTT 1761
Query 937 ATATCCCCGAAGCTACGATTACTAGATTGGTCGTGTTTCCCGATGACATCTTTGCGTTTT 996
||||| |||||||||||||| |||| |||| || ||| |||||||||||||| | ||||
Sbjct 1762 ATATCTTCGAAGCTACGATTAATAGAGTGGTGGTATTTTCCGATGACATCTTTCCCTTTT 1821
Query 997 ATTAATAATCTGGAATTCCTTGTCGAATTAAGGATGTGTTACAGCAAACTTGAGAAGCTG 1056
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 1822 ATTAATAATCTGGAATTCCTTGTCGAATTAAAAATGCCTTACAGCAAGCTTGAGAAGCTG 1881
Query 1057 TGGGACGGAATTCAA-CTGGTTAGAAATCTCAAGCATATGGATTTGACAGATTCTAGAAA 1115
||||||||||| ||| ||| || |||||||||||| |||||||||| || ||||| ||||
Sbjct 1882 TGGGACGGAAT-CAAACTGCTTCGAAATCTCAAGCGTATGGATTTGGCAAATTCT-GAAA 1939
Query 1116 -CCTGAAGGAGCTTCCTAATCTCTCAATGGCTACTAATCTTAAGAATTTAAACCTTGAAA 1174
|||||||||||||||||||||||||||||| |||| |||| || | ||||||||||||
Sbjct 1940 ACCTGAAGGAGCTTCCTAATCTCTCAATGGCCACTAGTCTTGAGGAGTTAAACCTTGAAG 1999
Query 1175 GATGTTCAAGTCTGGTGGAGCTTCCTTCCTCTATTGGAAATGCAACTAGTCTCCA 1229
|||||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||
Sbjct 2000 GATGTTCAAGTCTGGTGGAGCTCCCTTCTTCTATTGGGAATTTAACTAATCTCCA 2054
Score = 383 bits (207), Expect = 3e-105
Identities = 279/312 (89%), Gaps = 12/312 (4%)
Strand=Plus/Plus
Query 1320 ATGTTCAAGTCTTGTATCACTCCCGCAGCTTCCAGATTCCATAATGGTCCTAAATGCACG 1379
||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2277 ATGCTCAAGGCTTGTATCACTCCCACAGCTTCCAGATTCCCTAATGGTCCTAAATGCACA 2336
Query 1380 AAATTGCGAGTCCCTAGAGAAACTAGATTGCTCCTTTTA-CAATCCAGGTATTCTT--CT 1436
|||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||| ||
Sbjct 2337 AAATTGTGAGTCCCTAGAGAAACTAGATTGCTCC-TTTAGCAATCCGGGTA--CTTGGCT 2393
Query 1437 CAAC--TTCGTTAACTGCTTCAACCTAAATCAAGAAGCAAGAGATCTCCTCATCGAGACA 1494
||| ||| || |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 2394 TAACTTTTC-TT-ACTGCTTCAAACTAAATAAAGAAGCAAGAGATCTCCTCATCCAGACA 2451
Query 1495 TCAACTGTTAATTTTGTGGTCTTACCTGGTAAAGAAGTGCCTGCGTGCTTCACTTACAGA 1554
||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2452 TCACCTGTTAACGTTGTGGTCTTACCCGGTAAAGAAGTGCCTGCGTGCTTCACTTACAGA 2511
Query 1555 AGTCATGGGAGTTCCGTATCAGTGAAGGTT-AATCAAAAGCTTCTTCATACGTCAACCAA 1613
|| |||||||||||||| |||||||| || |||||||||| ||||| ||| ||||||||
Sbjct 2512 GGTTATGGGAGTTCCGTAACAGTGAAG-TTGAATCAAAAGCCTCTTCCTACATCAACCAA 2570
Query 1614 ATTTAAGGCTTG 1625
||||||||||||
Sbjct 2571 ATTTAAGGCTTG 2582
Score = 327 bits (177), Expect = 1e-88
Identities = 245/277 (88%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 1248 ATGTTCTAGTCTGGTGGAGCTCCCTTTTTCAATTGGGAATTTAACTAATCTTTGGAAATT 1307
|||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 2001 ATGTTCAAGTCTGGTGGAGCTCCCTTCTTCTATTGGGAATTTAACTAATCTCCAGAAATT 2060
Query 1308 A-GATCTTCG-TGAATGTTCAAGTCTTGTATCACTCCCGCAGCTTCCAGATTCCATAATG 1365
| | ||| | | ||| ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 2061 ATCA-CTT-GAAGGATGCTCAAGGCTTGTATCACTCCCACAGCTTCCAGATTCCCCAATG 2118
Query 1366 GTCCTAAATGCACG-AAATTGCGAGTCCCTAGAGAAACTAGATTGCTCCTTTTACAATCC 1424
|||||| ||||| | |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2119 GTCCTAGATGCA-GAAAATTGTGAGTCCCTAGAGAAACTAGATTGCTCCTTTTGCAATCC 2177
Query 1425 AGGTATTCTTCTCAACTTCGTTAACTGCTTCAACCTAAATCAAGAAGCAAGAGATCTCCT 1484
| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2178 ATGTATTCATCTCAACTTCGCTAACTGCTTCAAACTAAATCAAGAAGCAAGAGATCTCCT 2237
Query 1485 CATCGAGACATCAACTGTTA-ATTTTGTGGTCTTACC 1520
|||| |||||||||||| || ||| |||||||||||
Sbjct 2238 CATCCAGACATCAACTGCTAGATTG-GTGGTCTTACC 2273
Score = 121 bits (65), Expect = 3e-26
Identities = 71/74 (96%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 161 TTTCCAGCCGTTTCCAGAATAGCGCAGTCATCGAGGATATCAAAGGAAGCTATCCAAAAC 220
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 716 TTTCCAGCCGTTTCCAGAATAGCGCACTCATCGAGGATATCAAAGGAAGCTATCCGAAAC 775
Query 221 CTCGTTTTGATGAG 234
|| |||||||||||
Sbjct 776 CTTGTTTTGATGAG 789
> Ahg915006 jgi|Araly1|915006|Al_scaffold_0001_5260
Length=2787
Score = 824 bits (446), Expect = 0.0
Identities = 836/1020 (82%), Gaps = 43/1020 (4%)
Strand=Plus/Plus
Query 228 TGATGAGGATCTTCAAATCTTCTGCAAGTATGCTTTTAACCAAAAGACCCCTGAAGATGG 287
||||||| ||||||||| ||||||| |||||||||| | |||||| ||||| |||||||
Sbjct 1074 TGATGAGTCTCTTCAAATGTTCTGCATGTATGCTTTTGATCAAAAGTCCCCTAAAGATGG 1133
Query 288 TTTCGATGAACTAGCTCGTGAAATTACATACCATGTCGGTGAACTTCCGTTAGGACTAAA 347
|||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 1134 TTTCGATGGACTTGCTCGTGAAATTACATACCTTGTCGGTGAACTTCCTTTAGGACTGAA 1193
Query 348 GGTTATTGGATCCCACTTTCGTGGATTGTCCAAGGAGCAGTGGCCAATGGAAGTATCAAG 407
|||||| |||||| ||||||| ||||| |||||||||| |||| ||||||||||||||||
Sbjct 1194 GGTTATGGGATCCTACTTTCGAGGATTATCCAAGGAGCGGTGGTCAATGGAAGTATCAAG 1253
Query 408 GTTAAGGACGT-ACCGTAATGGAGATATTGAGCGCATTTTGAAGTTCAGTTATGATGCTT 466
||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1254 GTTAAGGAC-TAACCTTAATGGAGAAATTGAGAGCATTTTGAAGTTCAGTTATGATGCTT 1312
Query 467 TATGTGATGAAGATAAAGATTTATTCCTTCATATAGCTTGCTTTTTCAACATGGAAAAAA 526
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1313 TATGTGATGAAGATAAAGATTTATTCCTTCATATAGCTTGCTTTTTCAATGGGGAAAAAA 1372
Query 527 TAACGAAAGTGAAAGAACTTT-TTGGCC-ACAGATTCAAGGATTTGAGACAAAGCCTTCA 584
| | || |||||||||| ||| ||| | | | ||||||||||||||| ||||| ||| |
Sbjct 1373 TGAGGAGAGTGAAAGAA-TTTCTTG-CTGAAAAATTCAAGGATTTGAGTCAAAGGCTTGA 1430
Query 585 CATTTTAGA-GATGAAATCTCTTATATCTATTGAACATACTGA-TCTTGAAGATTC--CG 640
| |||||| || ||||||||| |||||||||||| ||| | | | | || || | ||
Sbjct 1431 CGTTTTAGTTGA-GAAATCTCTCATATCTATTGAATATAATCAATAT-GATTAT-CAACG 1487
Query 641 -AGTATTATGAGTCC-ATA-AAC-ATGCGTAACTTGCTGGTCCAACTAGGTC-AAGAAAT 695
| | |||| || || ||| |||| ||| ||| ||| |||||||||| || ||||
Sbjct 1488 CAA-AC-ATGATTCGTATGTAACGATGCATAAATTGTTGGGCCAACTAGGTAGAA-AAAT 1544
Query 696 CGTCC-GTAAAGAATCCGTTCTTGAGCCT-GGTCAACGCC-GATTTTTGATTGATTATAA 752
|| || |||| || | |||||||||| || ||||||| | ||||||||||| | |
Sbjct 1545 CG-CCAGTAAC---TCTGATCTTGAGCCTAGG-CAACGCCAG-TTTTTGATTGA--A-AC 1595
Query 753 AGATATTTGTGCAGTAGTCTCTGGTCATACAACAATTACTGGAAGTGTTGTAGGCATAGA 812
||||||| ||| || || ||||| ||||| | |||||| ||||| || | ||||||||
Sbjct 1596 TGATATTTCTGCTTTACTCCCTGGTTATACAGCGATTACTAGAAGTTTTATTGGCATAGA 1655
Query 813 CTCCAAGAATTGGTTAAGTATAACTGAG-AAATCCTTTAAAGGAATGTCTAATCTCCAGT 871
|||||| || |||||| |||||||| | ||||| ||| |||||||||||||||||||||
Sbjct 1656 ATCCAAGTATGGGTTAAATATAACTGGGGAAATC-TTTGAAGGAATGTCTAATCTCCAGT 1714
Query 872 TCTTAAGAGTCAAAAACGATTTATA-TCATCCAAACATTATATCTTCTCCGGGACCTCTG 930
|||||||| ||| || ||| || ||||| ||||||||||||||||| | || | ||
Sbjct 1715 TCTTAAGAATCAGCAATGATC-ATGGTCATCGAAACATTATATCTTCTCAGAGATGTTTG 1773
Query 931 ACTTTTATATCCCCGAAGCTACGATTACTAGATTGGTCGTGTT-TCCCGATGACATCTTT 989
|| |||||||| || || |||||||||||| ||||||| | || ||| ||||||| |||
Sbjct 1774 ACCTTTATATCTCCAAATCTACGATTACTATATTGGTCTTTTTGTCCA-ATGACATGTTT 1832
Query 990 GCGTTTTATTAATAATCTGGAATTCCTTGTCGAATTAAGGATGTGTTACAGCAAACTTGA 1049
| |||||| ||| | || || |||||||| ||||||| |||| || ||||| |||||
Sbjct 1833 GAGTTTTACAAATGACCTAGAGTTCCTTGTTGAATTAAAAATGTTTTGCAGCACGCTTGA 1892
Query 1050 GAAGCTGTGGGACGGAATTCAACTGGTTAGAAATCTCAAGCATATGGATTTGACAGATTC 1109
|||||| |||||||||| | ||||| || |||||||||||| || |||||| || ||
Sbjct 1893 GAAGCTCTGGGACGGAACTAAACTGCTTCGAAATCTCAAGCGGATAGATTTGTCATCGTC 1952
Query 1110 TAGAAACCTGAAGGAGCTTCCTAATCTCTCAATGGCTACTAATCTTA-AGAATTTAAACC 1168
| | ||||||||||||||||||||||||||||||| |||||||| | | || | |
Sbjct 1953 TCGTTACCTGAAGGAGCTTCCTAATCTCTCAATGGCCACTAATCTCACATCCTT-AGATG 2011
Query 1169 TT-GAAAGATGTTCAAGTCTGGTGGAGCTTCCTTCCTCTATTGGAAATGCAACTAGTCTC 1227
|| | ||||||||||||| |||||||| ||||| |||||||| |||||||||| ||||
Sbjct 2012 TTCGTG-GATGTTCAAGTCTAGTGGAGCTCCCTTCTTCTATTGGGAATGCAACTAATCTC 2070
Score = 340 bits (184), Expect = 2e-92
Identities = 336/408 (82%), Gaps = 15/408 (4%)
Strand=Plus/Plus
Query 1248 ATGTTCTAGTCTGGTGGAGCTCCCTTTTTCAATTGGGAATTTAACTAATCTTTGGAAATT 1307
|||||| ||||| ||||| || || ||| || | ||||||||||||| |||||
Sbjct 2157 ATGTTCAAGTCTAGTGGAACTACC---TTCCTTTAGCCATTTAACTAATCTCCAAAAATT 2213
Query 1308 A-GATCTTCGTGAATGTTCAAGTCTTGTATCACTCCCGCAGCTTCCAGATTCCATAATGG 1366
| | ||| | ||| ||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 2214 ATCA-CTTAAAGGATGCTCAAGGCTTGTATCACTCCCACAGCTTCCAGATTCCCTAATGG 2272
Query 1367 TCCTAAATGCACG-AAATTGCGAGTCCCTAGAGAAACTAGATTGCTCCTTTTACAATCCA 1425
||||| ||||| | |||||| ||||||||||||||| |||||||||| |||| |||||||
Sbjct 2273 TCCTAGATGCA-GAAAATTGTGAGTCCCTAGAGAAAATAGATTGCTCTTTTTGCAATCCA 2331
Query 1426 GGTATT-CTTCTCAACTTCGTTAACTGCTTCAACCTAAATCAAGAAGCAAGAGATCTCCT 1484
||| || | ||| |||||| |||||||||||| | ||| ||||||||||||||||| |
Sbjct 2332 GGT-TTGCGTCTGAACTTCAATAACTGCTTCAAATTGAATAAAGAAGCAAGAGATCTCAT 2390
Query 1485 CATCGAGACATCAACTGTT-AATTTTGTGGTCTTACCTGGTAAAGAAGTGCCTGCGTGCT 1543
|||| ||| ||||||| || || |||| || |||||| ||||||||||||||||||||||
Sbjct 2391 CATCCAGAGATCAACTCTTGAA-TTTGCGGCCTTACCCGGTAAAGAAGTGCCTGCGTGCT 2449
Query 1544 TCACTTACAGAAG-TCATGGGAGTTCCGTATCAGTGAAGGTT-AATCAAAAGCTTCTTCA 1601
||||||||||| | | ||||||||||| || |||||||| || |||||||||| ||||
Sbjct 2450 TCACTTACAGA-GCTTATGGGAGTTCCATAGCAGTGAAG-TTGAATCAAAAGCCTCTTTG 2507
Query 1602 TACGTCAACCAAATTTAAGGCTTGCATCTTGTTTGAGAACGAGGTCGA 1649
||| | || ||||||||||||||||||||| ||| ||| ||| |||
Sbjct 2508 TACACCCACAAAATTTAAGGCTTGCATCTTGGTTGTTAACAAGGCCGA 2555
> Ahg891927 jgi|Araly1|891927|Al_scaffold_0007_3913
Length=2511
Score = 161 bits (87), Expect = 2e-38
Identities = 296/393 (75%), Gaps = 30/393 (8%)
Strand=Plus/Plus
Query 240 TCAAATCTTCTGCAAGTATGCTTTTAACCAAAAGACCCCTGAAGATGGTTTCGATGAACT 299
||| ||||| || | |||||||||| |||||| |||| |||||||||| || || ||
Sbjct 579 TCAGATCTTTTGTATGTATGCTTTTGGCCAAAACTTCCCTAAAGATGGTTTTGAGGAGCT 638
Query 300 AGCTCGT-G-AAATTACATACCATGTCGGTGAA-CTTCCGTTAGGACTAAAG-GTTATTG 355
| ||| | || ||||| | | | | ||| || || || || ||||| ||| ||||| |
Sbjct 639 TG--CGTGGCAAGTTACAAAACTTTTAGGT-AATCTACCTTTGGGACT-AAGAGTTATGG 694
Query 356 GATCCCACTTTCGTGGATTGTCCAAGG-A-GCAGT-GGCCAATGGAAGTATCAAGGTTAA 412
|||||||||| || ||| ||| | ||| | | ||| || ||| | | || |||||||||
Sbjct 695 GATCCCACTTCCGGGGAATGT-CTAGGCATG-AGTGGGTAAAT-GCATTACCAAGGTTAA 751
Query 413 GGACGT-ACCGTAATG-GAGATATTGAGCGCATTTTGAAGTTCAGTTATGATGCTTTATG 470
|| | || | ||| || |||| | ||||||| ||||||||||| ||||| |||||
Sbjct 752 AGA-TTCGCCTTGATGCTAG-TATTCAAAGCATTTTAAAGTTCAGTTACGATGCCTTATG 809
Query 471 TGATGAAGATAAAGATTTATTCCTTCATATAGCTTGCTTTTTCAAC-ATGGAAAAAATAA 529
||| ||||||||||||||||||||||||||||| ||| |||||||| ||| || ||||
Sbjct 810 TGAAGAAGATAAAGATTTATTCCTTCATATAGCCTGCCTTTTCAACGATG-AAGAAATGG 868
Query 530 CGAAAGTGAAAGAACTT-T-TTGGCCACA-GATTCA-AGGATTTGAGACAAAGCCTTCAC 585
|| |||| |||| || | ||| | || | ||| || || |||| ||| | ||||||
Sbjct 869 TGAGAGTGGAAGA--TTATCTTG-CTTCAAGTTTCTTAG-ATGTGAGGCAAGGGCTTCAC 924
Query 586 ATTTTAGA-GATGAAATCTCTTATATCTATTGA 617
| |||| || ||||||||| ||| |||||||
Sbjct 925 CTCTTAGCTGA-GAAATCTCTCATAGCTATTGA 956
> Ahg497514 jgi|Araly1|497514|fgenesh2_kg.686__1__AT5G38350.1
Length=2166
Score = 159 bits (86), Expect = 6e-38
Identities = 213/272 (78%), Gaps = 18/272 (7%)
Strand=Plus/Plus
Query 255 GTATGCTTTTAACCAAAAGACCCCTGAAGATGGTTTCGATGAACTAGC-TCGTG-AAATT 312
|||||||||| ||||||| |||| ||||||||||||| || || || | | | || ||
Sbjct 234 GTATGCTTTTGACCAAAACTTCCCTAAAGATGGTTTCGAGGAGCTTGCAT-G-GCAAGTT 291
Query 313 ACATACCATGTCGGTGAA-CTTCCGTTAGGACTAAAG-GTTATTGGATCCCACTTTCGTG 370
||| | | | | ||| || || || || ||||| ||| ||||| ||||||||||| || |
Sbjct 292 ACAAAACTTTTAGGT-AATCTACCTTTGGGACT-AAGAGTTATGGGATCCCACTTCCGAG 349
Query 371 GATTGTCCAAGG-A-GCAGT-GGCCAATGGAAGTATCAAGGTTAAGGACGT-ACCGTAAT 426
|| ||| | ||| | | ||| || ||| | | || ||||||||| || | || | ||
Sbjct 350 GAATGT-CTAGGCATG-AGTGGGTAAAT-GCATTACCAAGGTTAAAGA-TTCGCCTTGAT 405
Query 427 G-GAGATATTGAGCGCATTTTGAAGTTCAGTTATGATGCTTTATGTGATGAAGATAAAGA 485
| || |||| | ||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 406 GCTAG-TATTCAAAGCATTTTAAAGTTCAGTTACGATGCCTTATGTGATGAAGATAAAGA 464
Query 486 TTTATTCCTTCATATAGCTTGCTTTTTCAACA 517
|||||||||||||||||| ||| |||||||||
Sbjct 465 TTTATTCCTTCATATAGCCTGCCTTTTCAACA 496
> Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919
Length=3678
Score = 158 bits (85), Expect = 2e-37
Identities = 290/385 (75%), Gaps = 30/385 (8%)
Strand=Plus/Plus
Query 240 TCAAATCTTCTGCAAGTATGCTTTTAACCAAAAGACCCCTGAAGATGGTTTCGATGAACT 299
||| ||||| || | |||||||||| |||||| |||| |||||||||| || || ||
Sbjct 1746 TCAGATCTTTTGTATGTATGCTTTTGGCCAAAACTTCCCTAAAGATGGTTTTGAGGAGCT 1805
Query 300 AGCTCGT-G-AAATTACATACCATGTCGGTGAA-CTTCCGTTAGGACTAAAG-GTTATTG 355
| ||| | || ||||| | | | | ||| || || || || ||||| ||| ||||| |
Sbjct 1806 TG--CGTGGCAAGTTACAAAACTTTTAGGT-AATCTACCTTTGGGACT-AAGAGTTATGG 1861
Query 356 GATCCCACTTTCGTGGATTGTCCAAGG-A-GCAGT-GGCCAATGGAAGTATCAAGGTTAA 412
|||||||||| || ||| ||| | ||| | | ||| || ||| | | || |||||||||
Sbjct 1862 GATCCCACTTCCGGGGAATGT-CTAGGCATG-AGTGGGTAAAT-GCATTACCAAGGTTAA 1918
Query 413 GGACGT-ACCGTAATG-GAGATATTGAGCGCATTTTGAAGTTCAGTTATGATGCTTTATG 470
|| | || | ||| || |||| | ||||||| ||||||||||| ||||| |||||
Sbjct 1919 AGA-TTCGCCTTGATGCTAG-TATTCAAAGCATTTTAAAGTTCAGTTACGATGCCTTATG 1976
Query 471 TGATGAAGATAAAGATTTATTCCTTCATATAGCTTGCTTTTTCAAC-ATGGAAAAAATAA 529
||||||||||||||||||||||||||||||||| ||| |||||||| ||| || ||||
Sbjct 1977 TGATGAAGATAAAGATTTATTCCTTCATATAGCCTGCCTTTTCAACGATG-AAGAAATGG 2035
Query 530 CGAAAGTGAAAGAACTT-T-TTGGCCACA-GATTCA-AGGATTTGAGACAAAGCCTTCAC 585
|| |||| |||| || | ||| | || | ||| || || |||| ||| | ||||||
Sbjct 2036 TGAGAGTGGAAGA--TTATCTTG-CTTCAAGTTTCTTAG-ATGTGAGGCAAGGGCTTCAC 2091
Query 586 ATTTTAGA-GATGAAATCTCTTATA 609
| |||| || ||||||||| |||
Sbjct 2092 CTCTTAGCTGA-GAAATCTCTCATA 2115
> Ahg891936 jgi|Araly1|891936|Al_scaffold_0007_3922
Length=3162
Score = 154 bits (83), Expect = 3e-36
Identities = 222/287 (77%), Gaps = 18/287 (6%)
Strand=Plus/Plus
Query 240 TCAAATCTTCTGCAAGTATGCTTTTAACCAAAAGACCCCTGAAGATGGTTTCGATGAACT 299
||| ||||| || | |||||||||| |||||| |||| |||||||||| || || ||
Sbjct 1212 TCAGATCTTTTGTATGTATGCTTTTGGCCAAAACTTCCCTAAAGATGGTTTTGAGGAGCT 1271
Query 300 AGCTCGT-G-AAATTACATACCATGTCGGTGAA-CTTCCGTTAGGACTAAAG-GTTATTG 355
| ||| | || ||||| | | | | ||| || || || || ||||| ||| ||||| |
Sbjct 1272 TG--CGTGGCAAGTTACAAAACTTTTAGGT-AATCTACCTTTGGGACT-AAGAGTTATGG 1327
Query 356 GATCCCACTTTCGTGGATTGTCCAAGG-A-GCAGT-GGCCAATGGAAGTATCAAGGTTAA 412
|||||||||| || ||| ||| | ||| | | ||| || ||| | | || |||||||||
Sbjct 1328 GATCCCACTTCCGAGGAATGT-CTAGGCATG-AGTGGGTAAAT-GCATTACCAAGGTTAA 1384
Query 413 GGACGT-ACCGTAATG-GAGATATTGAGCGCATTTTGAAGTTCAGTTATGATGCTTTATG 470
|| | || | ||| || |||| | ||||||| ||||||||||| ||||| |||||
Sbjct 1385 AGA-TTCGCCTTGATGCTAG-TATTCAAAGCATTTTAAAGTTCAGTTACGATGCCTTATG 1442
Query 471 TGATGAAGATAAAGATTTATTCCTTCATATAGCTTGCTTTTTCAACA 517
||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1443 TGATGAAGATAAAGATTTATTCCTTCATATAGCCTGCCTTTTCAACA 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5