BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57660.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1 1035 0.0
Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1 896 0.0
Ahg919727 jgi|Araly1|919727|scaffold_101008.1 619 7e-177
Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1 592 2e-168
> Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1
Length=687
Score = 1035 bits (560), Expect = 0.0
Identities = 630/662 (95%), Gaps = 11/662 (2%)
Strand=Plus/Plus
Query 5 CTTCTCTAGGGTTTCAGCCACCAGACTCAAACAGAGAGTG-AAAATGCCGGCGGGACACG 63
||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 1 CTTTTCTAGGGTTTCAGCCACCAGACACAAACAGAGAG-GAAAAATGCCGGCGGGACACG 59
Query 64 GAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTC 123
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 GAGTGAGAGCGAGAACAAGAGATCTGTTCGCAAGACCATTCAGGAAGAAGGGTTATATTC 119
Query 124 CACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATG 179
Query 184 GAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGA 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGCTATCCACAAGGGTATGCCGCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGA 239
Query 244 ATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAGATTGGGAACAGAATCATAA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAGATTGGGAACAGAATCATAA 299
Query 304 GGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCAAGGTGTGCTGAGGAGTTTA 363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 GGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGTCAAGGTGTGCTGAGGAGTTTA 359
Query 364 AACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTG-ATGCTAAAGCCAGAGGAGAGACT 422
||||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 360 AACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA-GCTAAAGCTAGAGGAGAGACT 418
Query 423 ATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTTCATGGTCGAAGGTATGACA 482
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 ATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTTCATGGTTGAAGGTATGACC 478
Query 483 TTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGATCTCAAGGGTGGTTATTGA 542
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 TTGGAGACTGTTACTCCCATTCCTTACGATGTTGTCAACGATCTCAAGGGTGGCTATTGA 538
Query 543 Gttttttccattttattatcattctctactcagaatttttgcacttgcttt-ttt----a 597
||| |||||||||| | |||||||||| || ||||||||||||||||||| ||| |
Sbjct 539 GTTGTTTCCATTTT-T-ATCATTCTCTGTTCGGAATTTTTGCACTTGCTTTGTTTTTTTA 596
Query 598 atgatgtttttGTATCAATTAAGACTAATTTCTATATGGTATGAAAGTGCAATTCAGATT 657
|||||||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||
Sbjct 597 ATGATGTTTTTGTATCAAACAAGACTGATTTCTATATGGTATGAGAGTGCAGTTCAGATT 656
Query 658 TT 659
||
Sbjct 657 TT 658
> Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1
Length=559
Score = 896 bits (485), Expect = 0.0
Identities = 534/557 (96%), Gaps = 6/557 (1%)
Strand=Plus/Plus
Query 39 AGAGTGAA-AATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAG 97
|||| ||| ||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 7 AGAG-GAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTTGCGAG 65
Query 98 ACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGG 157
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 66 ACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAGGTCGG 125
Query 158 CGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTA 217
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 126 CGATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAGTTCTA 185
Query 218 CCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAA 245
Query 278 CAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCA 305
Query 338 ACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGC 397
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 306 GCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGC 365
Query 398 TG-ATGCTAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAAC 456
|| | ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 366 TGCA-GCTAAAGCCAGAGGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCCCAAAC 424
Query 457 CGGGTTTCATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTG 516
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 425 CAGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGATGTTG 484
Query 517 TCAACGATCTCAAGGGTGGTTATTGAGttttttccattttattatcattctctactcaga 576
||||||||||||||||||| ||||||||| |||||| ||| | |||||||||| ||||||
Sbjct 485 TCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCAGTTT-T-ATCATTCTCTGCTCAGA 542
Query 577 atttttgcacttgcttt 593
|||||||||||||||||
Sbjct 543 ATTTTTGCACTTGCTTT 559
> Ahg919727 jgi|Araly1|919727|scaffold_101008.1
Length=549
Score = 619 bits (335), Expect = 7e-177
Identities = 447/502 (89%), Gaps = 3/502 (1%)
Strand=Plus/Plus
Query 45 AAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTC 104
|||||||||||||| || ||||| |||||||||| || |||||||||||||| || |||
Sbjct 32 AAAATGCCGGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCCGTTC 91
Query 105 AGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTAC 164
||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |||
Sbjct 92 AGGAAGAAGGGTTATATTCCACTATCGACGTACCTGAGAACCTTCAAGGTCGGCGACTAC 151
Query 165 GTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGT 224
|||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct 152 GTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGT 211
Query 225 CGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAG 284
||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 212 CGTACTGGTCGTGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTTGAAGTCAACAAACAG 271
Query 285 ATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCA 344
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 272 ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGCAATCA 331
Query 345 AGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTG-ATGC 403
|| |||||||||||||| || || || |||||| ||||||||| ||| ||||||| | ||
Sbjct 332 AGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCTGCA-GC 390
Query 404 TAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTT 463
||||||| ||| ||||| ||||||||||||||||||||||| || || ||||| || ||
Sbjct 391 CAAAGCCACAGGCGAGACCATCAGCACCAAGAGACAGCCTAAGGGACCCAAACCAGGATT 450
Query 464 CATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGA 523
|||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 451 CATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTTGTCAACGA 510
Query 524 TCTCAAGGGTGGTTATTGAGtt 545
||||||||| || |||| ||||
Sbjct 511 TCTCAAGGGAGGCTATT-AGTT 531
> Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1
Length=617
Score = 592 bits (320), Expect = 2e-168
Identities = 442/502 (88%), Gaps = 3/502 (1%)
Strand=Plus/Plus
Query 45 AAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTC 104
|||||||| ||||| || ||||| |||||||||| || |||||||||||||| ||||||
Sbjct 29 AAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCCATTC 88
Query 105 AGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTAC 164
|||||||||||||| |||||||| || |||||||| || |||||||||||||||||||||
Sbjct 89 AGGAAGAAGGGTTACATTCCACTATCGACTTACCTGAGGACCTTCAAGGTCGGCGATTAC 148
Query 165 GTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGT 224
|||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct 149 GTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGT 208
Query 225 CGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAG 284
||||||||||| ||||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 209 CGTACTGGTCGTGTCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAAACAG 268
Query 285 ATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCA 344
||||| ||||| ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct 269 ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTCCAGCAATCA 328
Query 345 AGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTG-ATGC 403
|| ||||| |||||||| || || || |||||| ||||||||| ||| ||||||| | ||
Sbjct 329 AGATGTGCGGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCTGCA-GC 387
Query 404 TAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTT 463
||||||| ||| ||||| |||||||||||||||||||||||||| || ||||| || ||
Sbjct 388 CAAAGCCAAAGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGGATT 447
Query 464 CATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGA 523
|||||| ||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 448 CATGGTTGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTCGTCAACGA 507
Query 524 TCTCAAGGGTGGTTATTGAGtt 545
|||||| || || |||| ||||
Sbjct 508 TCTCAAAGGAGGCTATT-AGTT 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5