BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57670.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314953 jgi|Araly1|314953|fgenesh1_pm.C_scaffold_1003733 1186 0.0
> Ahg314953 jgi|Araly1|314953|fgenesh1_pm.C_scaffold_1003733
Length=1164
Score = 1186 bits (642), Expect = 0.0
Identities = 1005/1176 (85%), Gaps = 42/1176 (4%)
Strand=Plus/Plus
Query 10 CTATCTCGCCCCGTCAATCAAGTTTTCATCAACTTCCGGGGAAAGGATATTCGCCACGGC 69
|||||||||||| || ||||||| ||||||||||||||||| || || ||||| |||||
Sbjct 10 CTATCTCGCCCCATCCATCAAGTGTTCATCAACTTCCGGGG-AA--ATCTTCGCTACGGC 66
Query 70 TTTGTCAGTCATCTTAAAGATGCCTTGAAAAGAAAAAATATCAACTTCTTCATCGATACA 129
|| |||||||| |||| ||||| |||||| || | ||||||||||| ||||| ||||||
Sbjct 67 TTCGTCAGTCACCTTACCGATGCTTTGAAACGACACAATATCAACTTTTTCATAGATACA 126
Query 130 CATGAACAAAAGGGAAGAGACCTGAACCACCTCTTTAAACGGATTGAAGAGGCCACGATC 189
|||||||||||||| |||||||| || || |||||||||||||| |||||||||||| ||
Sbjct 127 CATGAACAAAAGGGCAGAGACCTAAAACATCTCTTTAAACGGATCGAAGAGGCCACGGTC 186
Query 190 GCGCTGGTCATCTTATCCCCAAGGTATGGGGAATCAAAATGGTGTTTGGAAGAACTGACG 249
|| ||||||||||||||| | ||||||| |||||||||||||||||||| || ||||||
Sbjct 187 GCACTGGTCATCTTATCCACTAGGTATGCAGAATCAAAATGGTGTTTGGATGAGCTGACG 246
Query 250 ACAATCATGGACCAAGAAGA-AAAAGGGCAAATGATTGTCATCCCAATCTTCTATAAAGT 308
| ||||||||| |||| ||| |||| || ||||||||||||||||||||||||| || ||
Sbjct 247 AAAATCATGGATCAAGCAGAGAAAATGG-AAATGATTGTCATCCCAATCTTCTACAAGGT 305
Query 309 GAGAA-CGGAAGACGTGGAGAAACA-AACGGGAGAGTTCGGCCATATGTTTTGGAGTTGC 366
|| || || ||||||||||| ||| | ||||| ||| || ||| |||||||||| |
Sbjct 306 GA-AACCGAAAGACGTGGAGCTACAGGA-GGGAGTGTTTGGTGATAGGTTTTGGAGTCAC 363
Query 367 G-ATGAAGAAGCAAGTCTTGAAGAGATGGAGAAATGGCAAGTGGCTTTGAAGGCTGTGTG 425
| | || || | |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 364 GCA-GATCAATCCAGTCGCGAAGAGATGGAGAAATGGCAAGTAGCTTTGAAGGCTGTGTG 422
Query 426 CAACAAAATTGGAC-TCACGTTGGATCTTAAAAGATCCGAGGCCAAATTTATCAAGAAGG 484
|||||| |||| | |||||||| ||| ||||||| ||||||||| |||||||||||||
Sbjct 423 CAACAAGGTTGG-CATCACGTTGTATCGCAAAAGATACGAGGCCAAGTTTATCAAGAAGG 481
Query 485 TTC-TGAAGGCGGTTGAGGAAGTTTTAACCA-CTATTCAATCTGATGAAGCAAAAG-AAG 541
|| |||||| ||||||| |||||||||||| | |||||||||| ||||| || || ||
Sbjct 482 -TCGTGAAGGAGGTTGAGAAAGTTTTAACCAGC-ATTCAATCTGGTGAAGGAAGAGAAAA 539
Query 542 GCAACTGTGTGGAGGATGTTGAAACATTTAACGTTCCACTGA-CTCTGCC----T--TGG 594
| | |||||| ||| || |||||||||| |||||||| | || |||| | |||
Sbjct 540 TC-ATTGTGTGAAGG-TG--AAAACATTTAAGGTTCCACT-AGCTTTGCCATGGTCATGG 594
Query 595 TCATGGTTTAGCTCGGCGGTTGAGCTAATTGGTGCAATTCTCGGCTTACTCGCTGAGACT 654
||||||||| |||| ||||||| | | |||||| || | || ||||||||| ||||| |
Sbjct 595 TCATGGTTTGGCTCAGCGGTTGGGTTGATTGGTACAGTGCTTGGCTTACTCTCTGAGTTT 654
Query 655 GTTCACGCTGATGAAGGAA-GAAGAGAAG-CTGATTTTGTGAAGAAAGTGAAAACACTTA 712
||||| | ||| ||||| ||||||||| | |||| ||||||||| |||||||| |||
Sbjct 655 GTTCA--AT-ATG-AGGAAGGAAGAGAAGAC-GATTGTGTGAAGAAGGTGAAAACGTTTA 709
Query 713 ATGTTCCACTGGCTTTGCCATGGTTATGGTTTGGCTCGGCGGTTGAA-CTAATTGGTGCA 771
||||||||||||| || ||||||||||||||| |||||| |||| || || ||||||||
Sbjct 710 ATGTTCCACTGGCATTACCATGGTTATGGTTTAGCTCGGTGGTT-AAGCTGATTGGTGCC 768
Query 772 GTGGTCGGCTTACTCATTAAGGCTGTTCAATCTGATGAAAGAAAAGAAGATGGTTGCGTG 831
||| |||||||||||||| || |||||| |||||||||| | | |||||||| ||| |||
Sbjct 769 GTGCTCGGCTTACTCATTGAGACTGTTCGATCTGATGAAGGGAGAGAAGATGATTGTGTG 828
Query 832 AAGAAAGTGAAAACATTTAACATTGCACTGGCTCTGCCATGGTTATGGTTTGGTTCGGCG 891
|||||||||||||||||||| || |||| ||||| |||||||||||||||||||||| |
Sbjct 829 AAGAAAGTGAAAACATTTAATGTTCCACTAGCTCTACCATGGTTATGGTTTGGTTCGGTG 888
Query 892 GTAGAGCTGATTGGTTCAGTGCTTGGC--A-TCATTAACACTGTTCGTTCTGGTGAAGGA 948
|| ||| |||||||| || |||| ||| | ||||| | |||||||| |||| |||||||
Sbjct 889 GTTGAGATGATTGGTGCAATGCTCGGCTTACTCATTGAGACTGTTCGATCTGATGAAGGA 948
Query 949 AGAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTTACGTTCCACTGGCTCTGCCATGG 1008
|||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 949 AGAGAAGATGATTGCGTGAAGAAAGTGAAAAAATTTAACGTTCCACTGGCTATGCCATGG 1008
Query 1009 TTATGGTTTGGCTCTGCGGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAATT 1068
|||||||||| || || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1009 ATATGGTTTGGTTCGGCTGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAACT 1068
Query 1069 GTTCACAAGTGTGCCTCACCAACCATGGTTATTCTTGCTAGTCAAGTTGGCTCTGTTGTG 1128
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1069 GTTCACAAGTGTGCCTCACCAGCCATGGTTATTCTTGCTAGTCAGGTTGGCTCTGTTGTG 1128
Query 1129 GCTATTTCGAGCCGTTGGGCTGATAAGTCTGTCTGA 1164
||||||||||||||||||||||||||||||||||||
Sbjct 1129 GCTATTTCGAGCCGTTGGGCTGATAAGTCTGTCTGA 1164
Score = 335 bits (181), Expect = 5e-91
Identities = 346/423 (82%), Gaps = 21/423 (5%)
Strand=Plus/Plus
Query 662 CTGATGAAGGAAGAAGAGAAGCTGATTTTGTGAAGAAAGTGAAAACACTTAATGTTCCAC 721
||| ||||||||| ||| || | ||| ||||||| ||||||||| |||| |||||||
Sbjct 521 CTGGTGAAGGAAG-AGA-AA-ATCATTGTGTGAAG---GTGAAAACATTTAAGGTTCCAC 574
Query 722 TGGCTTTGCCATGG---T--T-ATGGTTTGGCTCGGCGGTTGAACTAATTGGTGCAGTGG 775
| |||||||||||| | | |||||||||||| ||||||| | |||||| |||||
Sbjct 575 TAGCTTTGCCATGGTCATGGTCATGGTTTGGCTCAGCGGTTGGGTTGATTGGTACAGTGC 634
Query 776 TCGGCTTACTCAT-TAAGGCTGTTCAATCTGATGAAAGAAAAGAAGATGGTTGCGTGAAG 834
| ||||||||| | | || |||||||| ||| ||| ||| |||||| | ||| ||||||
Sbjct 635 TTGGCTTACTC-TCTGAGTTTGTTCAATATGAGGAAGGAAGAGAAGACGATTGTGTGAAG 693
Query 835 AAAGTGAAAACATTTAACATTGCACTGGC-TCTGCCATGGTTATGGTTTGGTTCGGCGG- 892
|| |||||||| ||||| || ||||||| | | ||||||||||||||| | |||| ||
Sbjct 694 AAGGTGAAAACGTTTAATGTTCCACTGGCAT-TACCATGGTTATGGTTTAGCTCGGTGGT 752
Query 893 TAGAGCTGATTGGTTCAGTGCTTGGC--A-TCATTAACACTGTTCGTTCTGGTGAAGGAA 949
|| ||||||||||| | ||||| ||| | ||||| | |||||||| |||| |||||| |
Sbjct 753 TA-AGCTGATTGGTGCCGTGCTCGGCTTACTCATTGAGACTGTTCGATCTGATGAAGGGA 811
Query 950 GAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTTACGTTCCACTGGCTCTGCCATGGT 1009
||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||
Sbjct 812 GAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTAATGTTCCACTAGCTCTACCATGGT 871
Query 1010 TATGGTTTGGCTCTGCGGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAATTG 1069
|||||||||| || | ||||||| || |||||||| ||||||||||||| | ||| | ||
Sbjct 872 TATGGTTTGGTTCGGTGGTTGAGATGATTGGTGCAATGCTCGGCTTACTCATTGAGACTG 931
Query 1070 TTC 1072
|||
Sbjct 932 TTC 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5