BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57680.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474854 jgi|Araly1|474854|fgenesh2_kg.1__4808__AT1G57680.1 3046 0.0
> Ahg474854 jgi|Araly1|474854|fgenesh2_kg.1__4808__AT1G57680.1
Length=1875
Score = 3046 bits (1649), Expect = 0.0
Identities = 1812/1885 (96%), Gaps = 34/1885 (2%)
Strand=Plus/Plus
Query 1 GGTTGTCACAGCTGGAAACAGCCTGTCACCAACGGAGAGtctctctcttcccttc-t-tc 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 GGTTGTCACAGCTGGAAACAGCCTGTCACCAACGGAGAGTCTCTCTCTTCCCTTCTTCTC 60
Query 59 tctctctAATCttttttttttcttccttgttctctatctctccttttccttcttcttctt 118
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 61 TCTCTCTAATCTTTTTTTTTTCTTCCTTCTTCTCTATCTCTCCTTTTCCTTCTTCTTCCT 120
Query 119 ccttctcctttctctgtttatttgcttcgtttcctcttctctttctccgattctttATCC 178
||| ||||| |||||||||||||| | | ||||||||||||||||||| |||||
Sbjct 121 CCTCCTCCTCTCTCTGTTTATTTG---C---T--TCTTCTCTTTCTCCGATTC-TTATCA 171
Query 179 ATCT--T-CGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTTTT 235
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ATCTCCTCCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTTTT 231
Query 236 ATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGT 291
Query 296 GATCTGGGCTGCTTTCTTTTGTAATCTAATTGCAGAAACTTTGCTCTGAC-T--T---G- 348
||||||||||||||| ||||||||||||||||||||||| |||||||||| | | |
Sbjct 292 GATCTGGGCTGCTTTGTTTTGTAATCTAATTGCAGAAAC-TTGCTCTGACTTGGTGGAGT 350
Query 349 --GATAGCTT-CGTAAAAGGTTCAATCTTTCTCCG-TTTTTCATCAATGAGTAGTAACTA 404
|||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 351 TTGATAGCTTGCGTAAAAGGTTCAATCTTTCTCCGTTTTTTCATCGATGAGTAGTTACTA 410
Query 405 ATCTGGAAATTTGTTGGGAGAGAAAGGGCACATTGCACTGCTATTGCTAGAGAACGTTTC 464
||||||||||||||||||||||||| || | ||| ||||||||||||||||||| ||||
Sbjct 411 ATCTGGAAATTTGTTGGGAGAGAAAAGGAAGATTTTACTGCTATTGCTAGAGAACTTTTC 470
Query 465 TGCATCCATGCTGGTAGAGAGCATGCGTGGATACTGTGTTTTGGGTGATGCCCCTGACAA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGCATCCATGCTGGTAGAGAGCATGCGTGGATACTGTGTTTTGGGTGATGCCCCTGACAA 530
Query 525 AATTAGTTCCCGATGCATTCGGCGTTGTGACGATATGTCTAGTCGCTCTGCTAGTTCTTT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AATTAGTTCCCGATGCATTCGGCGTTGTGACGATATGTCTAGTCGCTCTGCTAGTTCTTT 590
Query 585 TGGGTCTCCTTTGCATCGCTTACTCGTTCTATTTCCAGTCTCACGTTCGTAAGCAAGGCT 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 591 TGGGTCTCCTTTGCATCGCTTACTCGTTCTATTTCCAGTCTCACGTTCGTAAGCAAGGGT 650
Query 645 ATATTCAACTTGGTTACTTCAGTGGTCCCTGGATTATCCGAATCACTTTCATTCTCTTTG 704
|||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 651 ATATTCAACTTGGTTACTTCAGTGGTCCTTGGATTATCCGAATTACATTCATTCTGTTTG 710
Query 705 CTATCTGGTGGGCTGTTGGTGAGATTTTTCGATTGAGTTTGTTGAGGCGTCACAGAAGGT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTATCTGGTGGGCTGTTGGTGAGATTTTTCGATTGAGTTTGTTGAGGCGTCACAGAAGGT 770
Query 765 TGTTGAGTGGGTTGGATCTGAGATGGCAAGAAAACGTTTGCAAGTGGTACATCGTTTCCA 824
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TATTGAGTGGGTTGGATCTGAGATGGCAAGAAAACGTTTGCAAGTGGTACATCGTTTCCA 830
Query 825 ATCTAGGATTTGCGGAGCCTTGTCTCTTTCTGACTCTCATGTTTCTTCTGCGTGCTCCCT 884
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 831 ATCTAGGATTTGCGGAGCCTTGCCTCTTTCTGACTCTCATGTTTCTTCTGCGTGCTCCCT 890
Query 885 TGAAGATGGAATCAGGGGCTTTGAGCGGAAAATGGAACAGGGACACAGCAGGTTATATTA 944
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 891 TGAAGATGGAATCAGGGGCTTTGAGCGGAAAATGGAACAGGAACACAGCAGGTTATATTA 950
Query 945 TTCTTTATTGTCTCCCGATGCTTGCTCTTCAACTTGCGGTTGTGTTGTCCGAGTCACGCC 1004
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 951 TTCTTTATTGTCTCCCGATGCTTGCTCTTCAACTTGCGGTTGTGTTATCCGAGTCACGCC 1010
Query 1005 TAAATGGTGGTAGTGGCTCTTATGTAAAGCTGCCACACGACTTCACAAGAACGTATTCCC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TAAATGGTGGTAGTGGCTCTTATGTAAAGCTGCCACACGACTTCACAAGAACGTATTCCC 1070
Query 1065 GAGTTATTATTGATCACGACGAGGTGGCCTTATGCACATATCCTCTACTGAGTACCATCC 1124
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1071 GAGTTAATATTGATCACGATGAGGTCGCCTTATGCACATATCCTCTACTGAGTACAATCC 1130
Query 1125 TTCTTGGTGTGTTTGCAGCCGTCCTAACAGCTTACTTGTTCTGGCTTGGAAGGCAGATAC 1184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTCTTGGTGTGTTTGCAGCCATCCTAACAGCTTACTTGTTCTGGCTTGGAAGGCAGATAC 1190
Query 1185 TGAAACTTGTCATTAACAAGCGTTTACAGAAGAGAGTATACACTTTGATATTCTCGGTCT 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1191 TGAAACTTGTCATTAACAAGCGTTTACAGAAGAGAGTATACACTTTGATATTCTCCGTCT 1250
Query 1245 CGAGTTTCCTTCCATTAAGGATTGTTATGCTCTGTTTGTCGGTTCTCACAGCAGCAGACA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CGAGTTTCCTTCCATTAAGGATTGTTATGCTCTGTTTGTCGGTTCTCACAGCAGCAGACA 1310
Query 1305 AGATTATATTCGAAGCCCTTTCTTTCTTGGCCTTCCTCTCCCTCTTCTGCTTTTGCGTGG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGATTATATTCGAAGCCCTTTCTTTCTTGGCCTTCCTCTCCCTCTTCTGCTTTTGCGTGG 1370
Query 1365 TATCCATCTGCTTGCTTGTCTACTTCCCGGTTTCAGATTCCATGGCCCTGAGAGGTCTAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TATCCATCTGCTTGCTTGTCTACTTCCCGGTTTCAGATTCCATGGCCCTGAGAGGTCTAA 1430
Query 1425 GAGACACAGATGATGAGGATACGGCTGTGACCGAAGAACGCAGTGGTGCTCTGTTACTTG 1484
| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GGGACTCAGACGAAGAGGATACGGCTGTGACCGAAGAACGCAGTGGTGCTCTGTTACTTG 1490
Query 1485 CACCAAACTCTTCACAAACTGATGAGGGATTGAGCTTAAGAGGTCGGAGAGACTCGGGAT 1544
|||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1491 CACCAAACACTTCACTAACTGATGAGGGCTTGAGCTTAAGAGGTCGGAGAGACTCGGGAT 1550
Query 1545 CGTCTACACAGGAGAGGTATGTGGAACTCAGCCTATTTCTGGAAGCTGAGAACTAAAATC 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CGTCTACACAGGAGAGGTATGTGGAACTCAGCCTATTTCTGGAAGCTGAGAACTAAAATC 1610
Query 1605 GCCAAAGGCTGTTTCTATTTGGCTTTTGGCAATGTACAGATTCCTGGTGAAACAAGCAGA 1664
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1611 GTCAAAGGCTGTTTCTATTTGGCTTTTGGCAATGTACAGATTCCTGGTGACACAAGCAGA 1670
Query 1665 GAGAGAG-G-G----A-TAAAGAGTTTAAGTATGAGAATATGTTTGCGCaaaaaaaGGCA 1717
||||||| | | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1671 GAGAGAGAGAGGGCTACTAAAGAGTTTAAGTAAGAGAATATGTTTGCGCAAAAAAAGGCA 1730
Query 1718 TAATTTCAGTTTTGTGGCAAAGACACTTTGACTGTAAAGGAGGGTTTAAGGGGG-TTTAC 1776
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1731 TAATTTCAGTTTTGTGGCAAAGACACTTTGACTGTAAAGGAGGGTTTAAGGGGGGTTTAC 1790
Query 1777 TCTTGTGAGGGTTTGTTGTTTGAAATGTTTTCTGCTTGATGGATCATATTTTTGTACCTT 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCTTGTGAGGGTTTGTTGTTTGAAATGTTTTCTGCTTGATGGATCATATTTTTGTACCTT 1850
Query 1837 TATTATGTGATCAATTTTGATTTAG 1861
|||||||||||||||||||||||||
Sbjct 1851 TATTATGTGATCAATTTTGATTTAG 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5