BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57690.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474855 jgi|Araly1|474855|fgenesh2_kg.1__4809__AT1G57690.1 1399 0.0
> Ahg474855 jgi|Araly1|474855|fgenesh2_kg.1__4809__AT1G57690.1
Length=991
Score = 1399 bits (757), Expect = 0.0
Identities = 917/995 (92%), Gaps = 8/995 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACAACTCGGCCACCCGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGACAACTCTGCCGCCTGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60
Query 61 ATCAAAGGAGAAGTTGACAT-AATTAGCTCTTTACCCGATGTGATCCTTCAACATATTCT 119
|||||||||||||| || | ||| ||||||||||| |||||||||||||||||||| ||
Sbjct 61 ATCAAAGGAGAAGTAGA-TTCAATCAGCTCTTTACCTGATGTGATCCTTCAACATATCCT 119
Query 120 CTTCTCTTTTCAGACGAAATACGCCATCAGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179
|||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CTTCTCTTTTGAGACGAAATTCGCCATCCGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179
Query 180 TGAAGCTGATGCCATAAACAAAGCCCTAAG-TCAATACACAGCTCCCAAGATGATGAATT 238
|||||||||||||||||||||||||||| | | ||||||||||||| ||||||||| |||
Sbjct 180 TGAAGCTGATGCCATAAACAAAGCCCTA-GCTAAATACACAGCTCCAAAGATGATGGATT 238
Query 239 TTCATCTCAAAATCAACAAGAATAACAGTCTTCATCACATCAAGAAGTGGACCGAATTTG 298
||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||
Sbjct 239 TTCATCTCAAAATCAACAAGAATAACAATGTTCACCACATCAAGAAGTGGATCGAATTTG 298
Query 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCGTTTTCGTTCTAACAAGATTC 358
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCTTTTTCGTTGTAAAAAGATTC 358
Query 359 CTCGTTTCTACGAGATCAATTCCTCTGTCAAGTCACTCAGCCATAGGTTAGATTTG-CAT 417
||||||||| ||| ||||| |||| | ||||| |||||| ||||| ||||||||| | |
Sbjct 359 CTCGTTTCTCCGACATCAACTCCTATTTCAAGCCACTCAACCATAAGTTAGATTTTTC-T 417
Query 418 GATGTGATTCCCCGACACGGTGTGTCTTGGACATCCTTGAAGAAGTTTTCCTTGAGTTAT 477
|||||||||||| ||||||||||||||||||||||| |||||||||| |||||| | |||
Sbjct 418 GATGTGATTCCCGGACACGGTGTGTCTTGGACATCCCTGAAGAAGTTGTCCTTGCGGTAT 477
Query 478 TGTGGGTTACCTGATGAATCTGCTAAGATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 TGTGGTTTACCTGATGAATCTGCTAAAATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537
Query 538 ATGCAGATTGTGGCACCACAGATCCATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597
| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 538 ACGCAGATTGTGGCACCACATATCAATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597
Query 598 ACTTTAGTTGATGTCTCATCCTTAACCGAAGCTGAAGTACTGGACATTATCATCTTCCCA 657
||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 598 ACTCTAGTTGATGTCTCGTCCTTAACCGAAGCTGAAGTATTGGACATTATCATTTTCCCA 657
Query 658 GTGAACCTGTCCTACAATGCTGATTTTCTTCATGCCACGATGCTAGAGATGCTAAAAAAG 717
||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 TTGAACATGTCCTTGAAGGCTGATTTTCTTTATGCCACGATGCTAGAGATGCTAAAAAAG 717
Query 718 TTAAAGAATGTAGAGAAGCTTACTTTTAGTGGAAGCTATCTTCAGA-ATTTGTCTGTTGC 776
||| ||||||||||||||||||||||||||||| ||| ||||||| || ||| || |
Sbjct 718 TTAGAGAATGTAGAGAAGCTTACTTTTAGTGGAGGCTCTCTTCAGTTATCA-TCTATTCC 776
Query 777 CGAGAAACGTGGTGTTCCTTTTCCAATGTTCAAGGTCAAAGCTTTGACTCTTGAGATGAA 836
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
Sbjct 777 CGAGAAACGTGGTGTTCCTTTTCCCATGTTCAAGGTCAAAGCTTTGACCCTTAAGATGGA 836
Query 837 ACACTTTGTAATTTCTGATATAGAAAGAATGTTACAAAGCTCACCTAATTTAAAGAAGCT 896
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 ACATTTTGTTATTTCTGATATAGAAAGAATGTTACAAAACTCACCTAATTTAAAGAAGCT 896
Query 897 AACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTTACAGATACTTTGCAAGGCTTGA 956
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 897 AACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTGACAGACACTTTACAAGGCTTGA 956
Query 957 ATCTGGATCAATGCTCGAGCTCAAAAAAGGTGTCT 991
||||||||||||||| ||| |||||||||||||||
Sbjct 957 ATCTGGATCAATGCTAGAGATCAAAAAAGGTGTCT 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5