BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57690.1 Length=993 Score E Sequences producing significant alignments: (Bits) Value Ahg474855 jgi|Araly1|474855|fgenesh2_kg.1__4809__AT1G57690.1 1399 0.0 > Ahg474855 jgi|Araly1|474855|fgenesh2_kg.1__4809__AT1G57690.1 Length=991 Score = 1399 bits (757), Expect = 0.0 Identities = 917/995 (92%), Gaps = 8/995 (1%) Strand=Plus/Plus Query 1 ATGGCAGACAACTCGGCCACCCGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60 |||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAGACAACTCTGCCGCCTGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60 Query 61 ATCAAAGGAGAAGTTGACAT-AATTAGCTCTTTACCCGATGTGATCCTTCAACATATTCT 119 |||||||||||||| || | ||| ||||||||||| |||||||||||||||||||| || Sbjct 61 ATCAAAGGAGAAGTAGA-TTCAATCAGCTCTTTACCTGATGTGATCCTTCAACATATCCT 119 Query 120 CTTCTCTTTTCAGACGAAATACGCCATCAGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179 |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 120 CTTCTCTTTTGAGACGAAATTCGCCATCCGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179 Query 180 TGAAGCTGATGCCATAAACAAAGCCCTAAG-TCAATACACAGCTCCCAAGATGATGAATT 238 |||||||||||||||||||||||||||| | | ||||||||||||| ||||||||| ||| Sbjct 180 TGAAGCTGATGCCATAAACAAAGCCCTA-GCTAAATACACAGCTCCAAAGATGATGGATT 238 Query 239 TTCATCTCAAAATCAACAAGAATAACAGTCTTCATCACATCAAGAAGTGGACCGAATTTG 298 ||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||| Sbjct 239 TTCATCTCAAAATCAACAAGAATAACAATGTTCACCACATCAAGAAGTGGATCGAATTTG 298 Query 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCGTTTTCGTTCTAACAAGATTC 358 ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCTTTTTCGTTGTAAAAAGATTC 358 Query 359 CTCGTTTCTACGAGATCAATTCCTCTGTCAAGTCACTCAGCCATAGGTTAGATTTG-CAT 417 ||||||||| ||| ||||| |||| | ||||| |||||| ||||| ||||||||| | | Sbjct 359 CTCGTTTCTCCGACATCAACTCCTATTTCAAGCCACTCAACCATAAGTTAGATTTTTC-T 417 Query 418 GATGTGATTCCCCGACACGGTGTGTCTTGGACATCCTTGAAGAAGTTTTCCTTGAGTTAT 477 |||||||||||| ||||||||||||||||||||||| |||||||||| |||||| | ||| Sbjct 418 GATGTGATTCCCGGACACGGTGTGTCTTGGACATCCCTGAAGAAGTTGTCCTTGCGGTAT 477 Query 478 TGTGGGTTACCTGATGAATCTGCTAAGATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 478 TGTGGTTTACCTGATGAATCTGCTAAAATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537 Query 538 ATGCAGATTGTGGCACCACAGATCCATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597 | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 538 ACGCAGATTGTGGCACCACATATCAATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597 Query 598 ACTTTAGTTGATGTCTCATCCTTAACCGAAGCTGAAGTACTGGACATTATCATCTTCCCA 657 ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| Sbjct 598 ACTCTAGTTGATGTCTCGTCCTTAACCGAAGCTGAAGTATTGGACATTATCATTTTCCCA 657 Query 658 GTGAACCTGTCCTACAATGCTGATTTTCTTCATGCCACGATGCTAGAGATGCTAAAAAAG 717 ||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||| Sbjct 658 TTGAACATGTCCTTGAAGGCTGATTTTCTTTATGCCACGATGCTAGAGATGCTAAAAAAG 717 Query 718 TTAAAGAATGTAGAGAAGCTTACTTTTAGTGGAAGCTATCTTCAGA-ATTTGTCTGTTGC 776 ||| ||||||||||||||||||||||||||||| ||| ||||||| || ||| || | Sbjct 718 TTAGAGAATGTAGAGAAGCTTACTTTTAGTGGAGGCTCTCTTCAGTTATCA-TCTATTCC 776 Query 777 CGAGAAACGTGGTGTTCCTTTTCCAATGTTCAAGGTCAAAGCTTTGACTCTTGAGATGAA 836 |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| | Sbjct 777 CGAGAAACGTGGTGTTCCTTTTCCCATGTTCAAGGTCAAAGCTTTGACCCTTAAGATGGA 836 Query 837 ACACTTTGTAATTTCTGATATAGAAAGAATGTTACAAAGCTCACCTAATTTAAAGAAGCT 896 ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 837 ACATTTTGTTATTTCTGATATAGAAAGAATGTTACAAAACTCACCTAATTTAAAGAAGCT 896 Query 897 AACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTTACAGATACTTTGCAAGGCTTGA 956 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 897 AACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTGACAGACACTTTACAAGGCTTGA 956 Query 957 ATCTGGATCAATGCTCGAGCTCAAAAAAGGTGTCT 991 ||||||||||||||| ||| ||||||||||||||| Sbjct 957 ATCTGGATCAATGCTAGAGATCAAAAAAGGTGTCT 991 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36902983656 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5