BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57720.1
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474857 jgi|Araly1|474857|fgenesh2_kg.1__4811__AT1G57720.1 2287 0.0
Ahg471063 jgi|Araly1|471063|fgenesh2_kg.1__1017__AT1G09640.1 1452 0.0
> Ahg474857 jgi|Araly1|474857|fgenesh2_kg.1__4811__AT1G57720.1
Length=1502
Score = 2287 bits (1238), Expect = 0.0
Identities = 1363/1422 (96%), Gaps = 13/1422 (1%)
Strand=Plus/Plus
Query 27 ATACTATTTCTCGCCGCCGCTTTTGTATCTTCT-TCTCTCTCGCTTTGCTCTCTCGGAAT 85
|||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 1 ATACTATTTCTCGCCGCCGCTTTTGTATATTCTCTCTCGCTCGCTTTGCTCTCTCGGAA- 59
Query 86 TGTTTTTGCAGAAAG-TCTCTCATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCT 144
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 -AATTTTGCAGAAAGCTCTCTCATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCT 118
Query 145 CCGTTTGAGCAATGGCGTTGGTCATGCACACATACAAGGGAAACAAAGGTGCCAATAAGG 204
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 119 CCGTTTGAGCAATGGCGTTGGTGTTGCACACGTACAAGGGAAACAAAGGTGCCAATAAGG 178
Query 205 CACTTATTGCTGCAGAGTATGCGGGTGTGAAGATCGAGGAGTCCGCAGACTTTCAGATGG 264
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 179 CACTTATTGCTGCGGAGTATGCGGGTGTGAAGATCGAGGAGGCCTCAGACTTTCAGATGG 238
Query 265 GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGGTTCCTGTGC 324
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 GCGTCACTAACAAGTCACCAGAGTTCCTTAAGATGAACCCTATTGGAAAGGTTCCCGTGC 298
Query 325 TTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTGCCCGATATGTGAGCCGTA 384
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 299 TTGAGACTCCTGAAGGTCCTATCTTTGAGAGCAATGCCATTGCCCGATACGTGAGCCGTA 358
Query 385 AGAATGGTGACAACTCTTTGAATGGATCCTCCCTTATTGAATACGCTCACATTGAGCAAT 444
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 AGAATGGTGACAACTCTTTGAATGGATCCTCCCTCATTGAATACGCTCACATTGAGCAAT 418
Query 445 GGATCGATTTCT-CCTCATTGGAGATTGATGCTAACATGTTGAAGTGGTTTGCTCCAAGA 503
|||||||||| | |||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 419 GGATCGATTT-TGCCTCGTTGGAGATTGATGCTCACATGTTGAAGTGGTTCGCTCCAAGA 477
Query 504 ATGGGCTATGCTCCCTTCTCTGCCCCAGCTGAGGAAGCGGCAATTTCTGCATTGAAGAGA 563
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGGGCTTTGCTCCCTTCTCTGCTCCAGCTGAGGAAGCGGCAATTTCTGCATTGAAGAGA 537
Query 564 GGACTTGAGGCTCTGAACACACATCTCGCCTCCAACACTTTCCTTGTTGGACACTCTGTC 623
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 GGACTTGAGGCTCTGAACACACATCTCGCCTCCAACACTTACCTTGTTGGACACTCTGTT 597
Query 624 ACCCTTGCTGATATTGTCACAATCTGCAACTTGAACTTGGGATTTGCCACCGTGATGACC 683
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 598 ACCCTTGCTGATATTGTCACCATCTGCAACTTGAACTTGGGATTTGCTACAGTGATGACC 657
Query 684 AAGAAATTTACCTCTGCATTCCCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAGAAATTTACCTCTGCATTCCCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAG 717
Query 744 CCAGAA-TTCAAGAAGGTGTTGGGTGATGCCAAACAAACCGAAGCTGTCCCTCCAGTTCC 802
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 CCA-AACTTCAAGAAGGTGTTGGGTGATGCCAAACAAACTGAAGCTGTCCCTCCAGTTCC 776
Query 803 TA-CTAAGAAAGCTCCACAGCCTGCTAAGCCCAAGGAGGAGCCCAAGAAGGCAGCCCCTG 861
| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 777 -ATCTAAGAAAGCTCCACAGCCTGCAAAGCCCAAGGAGGAGCCTAAGAAGGCGGCCCCTG 835
Query 862 TAGCAGAGGCACCAAAGCCTGCTGAGGAGGAGGAAGCACCAAAGCCTAAAGCCAAGAATC 921
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 TTGCAGAGGCACCAAAGCCTGCTGAGGAGGAAGAAGCACCAAAGCCTAAAGCCAAGAATC 895
Query 922 CTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGA 981
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 896 CTCTCGATTTGCTACCACCAAGCCCAATGGTTCTTGATGACTGGAAGAGGCTTTACTCGA 955
Query 982 ACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGGATTCTGGGACATGTATGACCCGG 1041
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 956 ACACCAAATCCAACTTCCGTGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAG 1015
Query 1042 AGGGGTACTCACTATGGTTCTGTGACTATAAGTACAACGATGAGAACATGGTCTCCTTTG 1101
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1016 AGGGGTACTCACTATGGTTCTGTGACTACAAGTACAACGATGAGAACATGGTCTCCTTTG 1075
Query 1102 TTACACTCAACAAGGTAGGAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCT 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTACACTCAACAAGGTAGGAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCT 1135
Query 1162 TTGGAAAGATGCTTATTTGCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTTT 1221
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1136 TCGGAAAGATGCTGATTTGCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTCT 1195
Query 1222 TCCGTGGACCAGAGATCCCCAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACG 1281
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCCGTGGACCAGAGATCCCTAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACG 1255
Query 1282 AGTGGACTAAGGTTGATATCTCCGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTG 1341
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGTGGACTAAGGTTGATATCTCAGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTG 1315
Query 1342 AAGACGCTGAGCCATTTGAAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1401
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAGACGCCGAGCCATTTGAAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1375
Query 1402 GCTCTT---TGTATCTCCGTAGAGGTTTACTCTGTTACTCGT 1440
|||||| ||||||||||||| |||||||||||||||||||
Sbjct 1376 GCTCTTCACTGTATCTCCGTAGGGGTTTACTCTGTTACTCGT 1417
> Ahg471063 jgi|Araly1|471063|fgenesh2_kg.1__1017__AT1G09640.1
Length=1766
Score = 1452 bits (786), Expect = 0.0
Identities = 1214/1413 (86%), Gaps = 60/1413 (4%)
Strand=Plus/Plus
Query 15 TTCCACACT-C-TAATA-CTATTTCTCGCCGCCGC-TTTTGTATCTTCTTCTCTCTCGCT 70
||| ||||| | | ||| || ||||| ||||| | |||| | | ||| | ||||||| |
Sbjct 37 TTCAACACTCCTTTATAGCT-TTTCT--CCGCCTCATTTTTTGT-TTC-T-TCTCTCGAT 90
Query 71 TTGCTCTCTCGGAATTGTTTTTGCAGAAAGTC-TCTCATCTGA-ACTCAGAAAATCTCCG 128
|||||||| ||||| | |||||||| || | ||| ||| || | |||| || | ||
Sbjct 91 TTGCTCTCACGGAA--GATTTTGCAG-AA--CATCTGATCCGATA-TCAG--AAGC-CCA 141
Query 129 AGTTCGTA-TAT-CTTCTCCGTTTGAGCAATGGCGTTGGTCATGCACACATACAAGGGAA 186
|||| || | | | ||||| ||||||||||| |||||| ||||||| ||||||||||
Sbjct 142 AGTT--TACT-TGAAT-TCCGTCTGAGCAATGGCTTTGGTCTTGCACACGTACAAGGGAA 197
Query 187 ACAAAGGTGCCAATAAGGCACTTATTGCT-GCAGAGTATGCGGGTGTGAAGATCGAGGAG 245
||||| |||| |||||||||| |||| | |||||||| | ||| || ||||||| |
Sbjct 198 ACAAAAGTGCTGATAAGGCACTCATTG-TAGCAGAGTACGTTGGTCTGCAGATCGATGTC 256
Query 246 TCCGCAGACTTTCAGATGGGCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCT 305
|| | |||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||
Sbjct 257 CCCTCTGACTTTGAGATGGGTGTCACTAACAAAACCCCTGAGTTCCTCAAGATGAACCCT 316
Query 306 ATTGGAAAGGTTCCTGTGCTTGAGACTCCTGAAGGTCCCA-TATTTGAGAGCAATGCCAT 364
||||||||||||||||| ||||||||||| | ||| || ||||||||||||| |||||
Sbjct 317 ATTGGAAAGGTTCCTGTACTTGAGACTCCCG-AGGGATCAGTATTTGAGAGCAACGCCAT 375
Query 365 TGCCCGATATGTGAGCCGTA-AGAATGGTGACAACTCTTTGAATGGATCCTCCCTTATTG 423
|||||| ||||| ||||| | ||| ||||||||||||||||| ||||||||||| ||||
Sbjct 376 TGCCCGTTATGTAAGCCG-ATTGAACGGTGACAACTCTTTGAACGGATCCTCCCTGATTG 434
Query 424 AATACGCTCACA-TTGAGCAATGGATCGA-TTTCTCCTCATTGGAGAT-TGATGCTAACA 480
|||| || || | |||||||||||| ||| ||| | ||||||||||| | ||| ||||
Sbjct 435 AATATGCACA-AGTTGAGCAATGGAGCGACTTT-GCTTCATTGGAGATCT-ATGGAAACA 491
Query 481 TGTTGAA-GTGGTTT-GCTCCAAGAATGGGC--TATGCTCCCTTCTCTGCCCCAGCTGAG 536
| || || ||||||| || |||||||||||| |||| || | | ||| || ||||||
Sbjct 492 TCTT-AAGGTGGTTTGGC-CCAAGAATGGGCTTTATG--CCATACAGTGCTCCGGCTGAG 547
Query 537 GAAGCG-GCAATTTCTGCATTGAAGAGAGGACTTGAGGCTCTGAACACACATCTCGCCTC 595
|||| | | || |||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 548 GAAG-GTACCATCTCTGCATTGAAGAGAGCACTTGATGCTCTGAACACACATCTCGCTTC 606
Query 596 CAACACTTTCCTTGTTGGACACTCTGTCACCCTTGCTGATATTGTCACAATCTGCAACTT 655
|||||||| |||||||||||||||| | ||||||||||||||| |||| ||||||||||
Sbjct 607 CAACACTTACCTTGTTGGACACTCTATTACCCTTGCTGATATTATCACTGTCTGCAACTT 666
Query 656 GAACTTGGGATTTGCCACCGTGATGACCAAGAAATTTACCTCTGCATTCCCTCATGTTGA 715
||||||||||||||| || || |||||||||||||||||||||| |||||||||||||||
Sbjct 667 GAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGAATTCCCTCATGTTGA 726
Query 716 GAGATACTTCTGGACAATGGTTAACCAGCCAGAA-TTCAAGAAGGTGTTGGGTGATGCCA 774
| | ||||||||||| |||||||||| ||| || |||||||| ||||||||||||| ||
Sbjct 727 GCGGTACTTCTGGACTGTGGTTAACCAACCA-AACTTCAAGAAAGTGTTGGGTGATGTCA 785
Query 775 AACAAACCGAAGCTGTCCCTCC-AGTTCCTACTAAGAAAGCT-CCACAGCCTGCTAAGCC 832
|||| || |||||||||||||| | || || | ||||||||| || |||||||| |||||
Sbjct 786 AACAGACTGAAGCTGTCCCTCCTA-TTGCTTCCAAGAAAGCTGCC-CAGCCTGCGAAGCC 843
Query 833 CAAGGAGGAGCCCAAG---AAGGCAGCCCCTGTAGCAGAGGCACCAAAGCCTGCTGAGGA 889
||| || ||||| ||| |||| |||||| |||||||||||||| |||| ||| || ||
Sbjct 844 CAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAAGCTTGCCGAAGA 903
Query 890 GGAGGAAGCACCAAAGCCTAAAGCCAAGAATCCTCTTGACTTGCTACCACCAAGCCCAAT 949
||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 904 GGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACCACCAAGCCCTAT 963
Query 950 GGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGC 1009
||| || ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 964 GGTACTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTTCCGCGAGGTTGC 1023
Query 1010 TATCAAAGGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACTA 1069
||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1024 TATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTTTGGTTCTGTGACTA 1083
Query 1070 TAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGTAGGAGGGTTCCT 1129
||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||
Sbjct 1084 CAAGTACAACGATGAGAACATGGTATCATTTGTCACACTCAACAAGGTGGGTGGGTTCCT 1143
Query 1130 TCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTTATTTGCGGGTCAGA 1189
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1144 TCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGATTTGCGGGTCAGA 1203
Query 1190 GGGTCC-TTTCAAGGTGAAGGGTTTATGGCTTTTCCGTGGACCAGAGATCCCCAAGTTCA 1248
|||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1204 GGGTCCGTTT-AAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGATCCCAAAGTTCA 1262
Query 1249 TAATGGATGAGGTGTACGACATGGAGCTGTACGAGTGGACTAAGGTTGATATCTCCGATG 1308
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1263 TAATGGACGAGGTGTATGACATGGAGCTGTACGAGTGGACTAAGGTTGATATCTCAGATG 1322
Query 1309 AAGCACAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCTGAGCCATTTGAAGGCGAGG 1368
|||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 1323 AAGCCCAGAAGGAGCGTGTTAGCCAGATGATCGAAGATGCAGAGCCATTTGAAGGTGAGG 1382
Query 1369 CTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1401
|||| ||||| ||||| ||||| ||||||||||
Sbjct 1383 CTCTCTTGGATGCCAAGTGCTTCAAGTGAAAAG 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5