BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57730.1
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915018 jgi|Araly1|915018|Al_scaffold_0001_5272 494 3e-139
> Ahg915018 jgi|Araly1|915018|Al_scaffold_0001_5272
Length=1038
Score = 494 bits (267), Expect = 3e-139
Identities = 442/524 (84%), Gaps = 21/524 (4%)
Strand=Plus/Plus
Query 9 AGAAATCACTATTGATGTTAACGTCTTTCCGAGTCCACGCAAGTCTTCATCGAATACAGT 68
||||||||| || ||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 522 AGAAATCACCATCGATGTTAACGTCTTTCCGAGTCCACGCAAGTCTCCATCAAATAGAGT 581
Query 69 GGAGATCA-ATCTCAAGCGTGAGAGCGACGACAAGTGTGATGATGCTCCTCTGTTCCAAA 127
|||||| | || |||||| |||||| ||||||| |||| ||||||| |||| ||||| ||
Sbjct 582 GGAGAT-ATATGTCAAGCTTGAGAGAGACGACACGTGTCATGATGCCCCTCCGTTCCCAA 640
Query 128 TCACTCAACTTATCTTAAA-AGACGTCGTTAACTTTGATCCACACAAGACCTCTCCTCTC 186
|||| | | || ||| | || | |||| |||||||||||||||||||||| |||||
Sbjct 641 TCACG-ATC--AT---AAACA-ACATGGTTAGCTTTGATCCACACAAGACCTCTTCTCTC 693
Query 187 CTCGAAACAATCTTTCCA-GACAGTATCTC--AGGCACTCGTCTTTGCGTTGAGATGGCT 243
||| | ||| ||| ||| ||| | ||||| | ||| |||||| ||||| |||||||||
Sbjct 694 CTCTATTCAACCTT-CCAAGAC-G-ATCTCTTACGCAGTCGTCTCTGCGTCGAGATGGCT 750
Query 244 TTAGCATCCGAACGAGTTCCAGCGCCGTTTGACATGTACCTTCACGTCACAGTGAGATTC 303
||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 751 TTAGCATCCGAACAAGTTCCAGCGCCGTTTAACATGTACCTTCACGGCACAGTGAGATTC 810
Query 304 GTCGAAGAATCCACTTCTAGTTCTCCTCTAGAAAACAAGACATGCGCTATTTGTTTGGAG 363
||| | ||| ||||||||||| ||| ||| || ||||||| |||||||||||||||
Sbjct 811 ATCGGATCATCTTCTTCTAGTTCTACTCAAGACAATGAGACATGTGCTATTTGTTTGGAG 870
Query 364 GATATGTCACAGGATGTACATGACTATCAGGAGATGCCGAATTGTCCCCATGTCTTTCAT 423
||||||||| |||||||||| |||| ||| ||||||||||||||||||||||| ||||||
Sbjct 871 GATATGTCAGAGGATGTACAAGACTTTCAAGAGATGCCGAATTGTCCCCATGTGTTTCAT 930
Query 424 AATGACTGTATCTACAAATGGTTGGGTCATAGTAAT-TTGTGCCCTCTCTGCCGCACTGT 482
|| |||||||| |||| ||||| | ||| || | || ||||||||||||||||||||
Sbjct 931 GATAACTGTATCCACAAGTGGTTAATTGATAATACTCTT-TGCCCTCTCTGCCGCACTGT 989
Query 483 T---CTTGAAGATGAAGATGACGACGATTATCCCTACTACTCCT 523
| ||||||||||| ||||||||| | |||||||||||||||
Sbjct 990 TATTCTTGAAGATGACGATGACGACAACCATCCCTACTACTCCT 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19115950089
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5