BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57750.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474859 jgi|Araly1|474859|fgenesh2_kg.1__4813__AT1G57750.1 2290 0.0
> Ahg474859 jgi|Araly1|474859|fgenesh2_kg.1__4813__AT1G57750.1
Length=1580
Score = 2290 bits (1240), Expect = 0.0
Identities = 1428/1518 (94%), Gaps = 15/1518 (1%)
Strand=Plus/Plus
Query 51 CGTAACGTTCATTTTCTT-TCTTGTATGCCTATTTACTTATTTCTTCCTCCAAAAGAAAC 109
|||| | ||| |||| || |||||||| || ||||||| ||||||| |||| |||||||
Sbjct 30 CGTAGCATTCCTTTT-TTCTCTTGTATTTCTTTTTACTTGTTTCTTCATCCACAAGAAAC 88
Query 110 CTCAAGGTCAGCCTATTCTCAAGAACTGGCCGTTCCTCAGGATGCTTCCAGGAATGCTCC 169
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 89 CTCACGGTCAGCCTATTCTCAAGAACTGGCCGTTCCTCGGGATGCTTCCAGGAATGCTCC 148
Query 170 ACCAAATCCCTCGTATCTACGACTGGACCGTCGAGGTGCTTGAGGCGACCAATCTAACTT 229
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 149 CCCAAATCCCTCGTATTTACGACTGGACTGTCGAGGTGCTTGAGGCGAGCAATCTAACCT 208
Query 230 TTTATTTCAAAGGGCCATGGCTTAGTGGAACGGACATGTTGTTCACCGCCGATCCAAGGA 289
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 209 TTTATTTCAAAGGGCCATGGCTTAGTGGAACGGACATGTTGTTCACCGCGGATCCAAAGA 268
Query 290 ATATTC-ATCACATACTAAGCTCAAACTTTGGGAATTACCCTAAAGGACCTGAGTTCAAG 348
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATA-TCAATCACATACTAAGCTCAAACTTTGGGAATTACCCTAAAGGACCTGAGTTCAAG 327
Query 349 AAGATCTTTGATGTTTTGGGAGAAGGAATCTTAACCGTTGATTTTGAGTTGTGGGAGGAG 408
|| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 328 AAAATCTTTGATGTTTTGGGAGAGGGAATCTTAACCGTTGATCTGGAGTTGTGGGAGGAT 387
Query 409 ATGAGGAAGTCAAATCACGCCCTATTCCACAATCAAGATTTCATCGAGCTCTCAGTAAGT 468
|||||||||||||||||||| | || ||||||||||||||| ||||||||||| |||||
Sbjct 388 CTGAGGAAGTCAAATCACGCCATGTTTCACAATCAAGATTTCCTCGAGCTCTCACTAAGT 447
Query 469 AGCAATAAAAGTAAGTTAAAAGAAGGTCTTGTTCCTTTTCTTGATAATGCTGCTCA-GAA 527
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 448 AGCAACAAAAGTAAGTTAAAGGAAGGTCTTGTTCCTTTTCTTGATAATGCTGCTCATG-A 506
Query 528 AAACATTATCATAGAATTACAAGATGTGTTCCA-GAGATTCATGTTTGATACTTCTTCAA 586
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 507 AAACATTATCATAGATTTACAAGATGTGTT-CATGAGATTCATGTTTGATACTTCTTCAA 565
Query 587 TTTTGATGACTGGTTACGATCCAATGTCACTATCCATCGAAATGCTGGAAGTTGAGTTCG 646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 TTTTGATGACTGGTTATGATCCAATGTCACTATCCATCGAAATGCTGGAAGTTGAGTTCG 625
Query 647 GTGAAGCTGCGGATATTGGCGAAGAAGCAATCTATTATAGACATTTCAAACCGGTGATCT 706
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 626 GTGAAGCTGCGGATATTGGCGAAGAAGCAATCTACTATAGACATTTCAAACCGGTGATGT 685
Query 707 TGTGGAGGCTTCAAAACTGGATTGGTATTGGGCTTGAGAGGAAGATGAGAACAGCTTTGG 766
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 686 TGTGGAGGCTTCAAAACTGGCTTGGTATTGGACTTGAGAGGAAGATGAGAACAGCTTTGG 745
Query 767 CCACTGTCAATCGTATGTTTGCGAAGATCATATCTTCAAGAAGAAAAGAGGAGATAAGTC 826
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 746 CCACGGTCAATCGTATGTTTGCAAAGATCATATCTTCAAGAAGAAAAGAGGAGATAAGTC 805
Query 827 GCGCCAAAACGGAGCCATATTCCAAGGACGCGTTGACGTATTATATGAATGTGGACACGA 886
| | |||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GTGGGGAAACCGAGCC--A-TCCAAGGACGCGTTGACGTATTATATGAATGTGGACACGA 862
Query 887 GCAAATATAAGCTCTTGAAACCTAATAAA-GATAAGTTTATAAGAGATGTTATTTTTAGT 945
||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||
Sbjct 863 CCAAATATAAGCTCTTGAAACCGAA-AAATGATACGTTTATAAGAGATGTTATTTTTAGT 921
Query 946 CTAGTGTTAGCAGGAAGGGACACCACAAGCTCAGTTCTCACTTGGTTCTTTTGGCTTCTT 1005
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 922 CTAGTGTTAGCAGGAAGGGACACCACAAGCTCAGCTCTCACTTGGTTCTTTTGGCTTCTT 981
Query 1006 TCTAAGCATCCTCAAGTTATGGCCAAGCTCAGACATGAGATCAACACAAAGTTTGATAAT 1065
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 982 TCTAAGCATCCTCAAGTTATGGCCAAGATCAGACATGAGATCAACACAAAGTATGATCCT 1041
Query 1066 GAAGATCTAGAGAAGCTCGTGTATCTGCATGCTGCATTGTCCGAATCAATGAGACTCTAC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 GAAGATCTAGAGAAGCTCGTGTATCTGCATGCTGCATTGTCCGAATCAATGAGACTCTAC 1101
Query 1126 CCGCCACTTCCCTTCAACCACAAGTCTCCTGCGAAGCCAGATGTACTTCCAAGCGGGCAC 1185
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1102 CCGCCACTTCCCTTCAACCACAAGGCTCCTGCAAAGCCAGATGTGCTTCCAAGCGGGCAC 1161
Query 1186 AAAGTTGATGCA-AATTCAAAGATCGTGATATGTATCTATGCATTGGGGAGGATGAGATC 1244
|||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||
Sbjct 1162 AAAGTTGAACCAGAAT-CAAAGATCGTGATTTGTATTTACGCCTTGGGGAGGATGAGATC 1220
Query 1245 TGTATGGGGAGAAGACGCATTGGATTTCAAACCAGAGAGATGGATTTCAGACAATGGAGG 1304
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGTATGGGGAGAAGATGCATCGGATTTCAAACCAGAGAGATGGATTTCAGACAATGGAGG 1280
Query 1305 TCTAAGACATGAACCTTCATACAAGTTCATGGCTTTTAATTCTGGTCCGAGAACTTGCTT 1364
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 1281 TCTAAGACATGAACCTTCATACAAGTACGTGGCGTTTAATTCTGGTCCGAGAACTTGCTT 1340
Query 1365 GGGTAAAAATCTAGCTCTCTTGCAGATGAAGATGGTAGCTCTGGAGATCATACGAAACTA 1424
||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1341 GGGTAAACATCTAGCTCTCTTGCAGATGAAGATAGTAGCTCTGGAGATCATAAAAAACTA 1400
Query 1425 TGACTTTAAGGTCATTGAAGGTCACAAGGTCGAACCAATTCCTTCTATCCTTCTCCGTAT 1484
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1401 TGACTTTAAGGTCATTGAAGGTCACAAGATCGAAGCAATTCCTTCTATCCTTCTCCGTAT 1460
Query 1485 GAAACATGGTCTTAAAGTCACAGTCACAAAGAAGATATGATTATTATGCTTGCTTGGCTT 1544
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1461 GAAACATGGTCTTAAAGTCACAGTCACTAAGAAGATGTGATTATTATGCTTGCTTGGCTT 1520
Query 1545 CTACGGCAACTATTACTA 1562
|||||| |||||||||||
Sbjct 1521 CTACGGTAACTATTACTA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5