BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57750.1 Length=1729 Score E Sequences producing significant alignments: (Bits) Value Ahg474859 jgi|Araly1|474859|fgenesh2_kg.1__4813__AT1G57750.1 2290 0.0 > Ahg474859 jgi|Araly1|474859|fgenesh2_kg.1__4813__AT1G57750.1 Length=1580 Score = 2290 bits (1240), Expect = 0.0 Identities = 1428/1518 (94%), Gaps = 15/1518 (1%) Strand=Plus/Plus Query 51 CGTAACGTTCATTTTCTT-TCTTGTATGCCTATTTACTTATTTCTTCCTCCAAAAGAAAC 109 |||| | ||| |||| || |||||||| || ||||||| ||||||| |||| ||||||| Sbjct 30 CGTAGCATTCCTTTT-TTCTCTTGTATTTCTTTTTACTTGTTTCTTCATCCACAAGAAAC 88 Query 110 CTCAAGGTCAGCCTATTCTCAAGAACTGGCCGTTCCTCAGGATGCTTCCAGGAATGCTCC 169 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 89 CTCACGGTCAGCCTATTCTCAAGAACTGGCCGTTCCTCGGGATGCTTCCAGGAATGCTCC 148 Query 170 ACCAAATCCCTCGTATCTACGACTGGACCGTCGAGGTGCTTGAGGCGACCAATCTAACTT 229 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| | Sbjct 149 CCCAAATCCCTCGTATTTACGACTGGACTGTCGAGGTGCTTGAGGCGAGCAATCTAACCT 208 Query 230 TTTATTTCAAAGGGCCATGGCTTAGTGGAACGGACATGTTGTTCACCGCCGATCCAAGGA 289 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 209 TTTATTTCAAAGGGCCATGGCTTAGTGGAACGGACATGTTGTTCACCGCGGATCCAAAGA 268 Query 290 ATATTC-ATCACATACTAAGCTCAAACTTTGGGAATTACCCTAAAGGACCTGAGTTCAAG 348 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269 ATA-TCAATCACATACTAAGCTCAAACTTTGGGAATTACCCTAAAGGACCTGAGTTCAAG 327 Query 349 AAGATCTTTGATGTTTTGGGAGAAGGAATCTTAACCGTTGATTTTGAGTTGTGGGAGGAG 408 || |||||||||||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct 328 AAAATCTTTGATGTTTTGGGAGAGGGAATCTTAACCGTTGATCTGGAGTTGTGGGAGGAT 387 Query 409 ATGAGGAAGTCAAATCACGCCCTATTCCACAATCAAGATTTCATCGAGCTCTCAGTAAGT 468 |||||||||||||||||||| | || ||||||||||||||| ||||||||||| ||||| Sbjct 388 CTGAGGAAGTCAAATCACGCCATGTTTCACAATCAAGATTTCCTCGAGCTCTCACTAAGT 447 Query 469 AGCAATAAAAGTAAGTTAAAAGAAGGTCTTGTTCCTTTTCTTGATAATGCTGCTCA-GAA 527 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | | Sbjct 448 AGCAACAAAAGTAAGTTAAAGGAAGGTCTTGTTCCTTTTCTTGATAATGCTGCTCATG-A 506 Query 528 AAACATTATCATAGAATTACAAGATGTGTTCCA-GAGATTCATGTTTGATACTTCTTCAA 586 ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| Sbjct 507 AAACATTATCATAGATTTACAAGATGTGTT-CATGAGATTCATGTTTGATACTTCTTCAA 565 Query 587 TTTTGATGACTGGTTACGATCCAATGTCACTATCCATCGAAATGCTGGAAGTTGAGTTCG 646 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 TTTTGATGACTGGTTATGATCCAATGTCACTATCCATCGAAATGCTGGAAGTTGAGTTCG 625 Query 647 GTGAAGCTGCGGATATTGGCGAAGAAGCAATCTATTATAGACATTTCAAACCGGTGATCT 706 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 626 GTGAAGCTGCGGATATTGGCGAAGAAGCAATCTACTATAGACATTTCAAACCGGTGATGT 685 Query 707 TGTGGAGGCTTCAAAACTGGATTGGTATTGGGCTTGAGAGGAAGATGAGAACAGCTTTGG 766 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 686 TGTGGAGGCTTCAAAACTGGCTTGGTATTGGACTTGAGAGGAAGATGAGAACAGCTTTGG 745 Query 767 CCACTGTCAATCGTATGTTTGCGAAGATCATATCTTCAAGAAGAAAAGAGGAGATAAGTC 826 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 746 CCACGGTCAATCGTATGTTTGCAAAGATCATATCTTCAAGAAGAAAAGAGGAGATAAGTC 805 Query 827 GCGCCAAAACGGAGCCATATTCCAAGGACGCGTTGACGTATTATATGAATGTGGACACGA 886 | | |||| ||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 806 GTGGGGAAACCGAGCC--A-TCCAAGGACGCGTTGACGTATTATATGAATGTGGACACGA 862 Query 887 GCAAATATAAGCTCTTGAAACCTAATAAA-GATAAGTTTATAAGAGATGTTATTTTTAGT 945 ||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| Sbjct 863 CCAAATATAAGCTCTTGAAACCGAA-AAATGATACGTTTATAAGAGATGTTATTTTTAGT 921 Query 946 CTAGTGTTAGCAGGAAGGGACACCACAAGCTCAGTTCTCACTTGGTTCTTTTGGCTTCTT 1005 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 922 CTAGTGTTAGCAGGAAGGGACACCACAAGCTCAGCTCTCACTTGGTTCTTTTGGCTTCTT 981 Query 1006 TCTAAGCATCCTCAAGTTATGGCCAAGCTCAGACATGAGATCAACACAAAGTTTGATAAT 1065 ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | Sbjct 982 TCTAAGCATCCTCAAGTTATGGCCAAGATCAGACATGAGATCAACACAAAGTATGATCCT 1041 Query 1066 GAAGATCTAGAGAAGCTCGTGTATCTGCATGCTGCATTGTCCGAATCAATGAGACTCTAC 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1042 GAAGATCTAGAGAAGCTCGTGTATCTGCATGCTGCATTGTCCGAATCAATGAGACTCTAC 1101 Query 1126 CCGCCACTTCCCTTCAACCACAAGTCTCCTGCGAAGCCAGATGTACTTCCAAGCGGGCAC 1185 |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| Sbjct 1102 CCGCCACTTCCCTTCAACCACAAGGCTCCTGCAAAGCCAGATGTGCTTCCAAGCGGGCAC 1161 Query 1186 AAAGTTGATGCA-AATTCAAAGATCGTGATATGTATCTATGCATTGGGGAGGATGAGATC 1244 |||||||| || ||| ||||||||||||| ||||| || || ||||||||||||||||| Sbjct 1162 AAAGTTGAACCAGAAT-CAAAGATCGTGATTTGTATTTACGCCTTGGGGAGGATGAGATC 1220 Query 1245 TGTATGGGGAGAAGACGCATTGGATTTCAAACCAGAGAGATGGATTTCAGACAATGGAGG 1304 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1221 TGTATGGGGAGAAGATGCATCGGATTTCAAACCAGAGAGATGGATTTCAGACAATGGAGG 1280 Query 1305 TCTAAGACATGAACCTTCATACAAGTTCATGGCTTTTAATTCTGGTCCGAGAACTTGCTT 1364 |||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 1281 TCTAAGACATGAACCTTCATACAAGTACGTGGCGTTTAATTCTGGTCCGAGAACTTGCTT 1340 Query 1365 GGGTAAAAATCTAGCTCTCTTGCAGATGAAGATGGTAGCTCTGGAGATCATACGAAACTA 1424 ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1341 GGGTAAACATCTAGCTCTCTTGCAGATGAAGATAGTAGCTCTGGAGATCATAAAAAACTA 1400 Query 1425 TGACTTTAAGGTCATTGAAGGTCACAAGGTCGAACCAATTCCTTCTATCCTTCTCCGTAT 1484 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1401 TGACTTTAAGGTCATTGAAGGTCACAAGATCGAAGCAATTCCTTCTATCCTTCTCCGTAT 1460 Query 1485 GAAACATGGTCTTAAAGTCACAGTCACAAAGAAGATATGATTATTATGCTTGCTTGGCTT 1544 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1461 GAAACATGGTCTTAAAGTCACAGTCACTAAGAAGATGTGATTATTATGCTTGCTTGGCTT 1520 Query 1545 CTACGGCAACTATTACTA 1562 |||||| ||||||||||| Sbjct 1521 CTACGGTAACTATTACTA 1538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64867687235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5