BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57765.2
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474862 jgi|Araly1|474862|fgenesh2_kg.1__4816__AT1G57765.1 798 0.0
Ahg919723 jgi|Araly1|919723|scaffold_101004.1 228 6e-59
> Ahg474862 jgi|Araly1|474862|fgenesh2_kg.1__4816__AT1G57765.1
Length=696
Score = 798 bits (432), Expect = 0.0
Identities = 629/717 (88%), Gaps = 41/717 (6%)
Strand=Plus/Plus
Query 51 AACATTGGAAGCTTCTTCTTCCTATTCTTCTTCTGCCAAACAGGAATCGGTCCTTCTTTG 110
||||||||||| |||||| | |||| || |||||| | | ||||||||||| | |||
Sbjct 19 AACATTGGAAG---CTTCTT-C--TTCTGCTGCTGCCAGAGAAGAATCGGTCCTCCCTTG 72
Query 111 CGCACAAGCAAAAATCCAAGAGACATCGAGATATGAGAGAGATCTCGATCTCGACGATTA 170
|| |||| | ||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 73 CGTACAATC-AAACTCCAAGAGACATCGAGAGATGAGAGAGATCTCGATCTCGACGCTTA 131
Query 171 CTCTTTCATGGTCGCATCTTCTACTCTGCGCTTCGATTTGTCTCCACTTCTTCTTAGCAA 230
||||||||||||| ||||||||||||| |||||||| || ||| | || | | |
Sbjct 132 CTCTTTCATGGTCACATCTTCTACTCTTCGCTTCGA-TT-TCT---C-TC--C--A-C-- 178
Query 231 TGTTGTATCTTGATTCTGTGTATCAGTGTATATCTGGTGATCCCAATAGTTCAAGTACTG 290
| || | || | | || ||||||| |||||| ||||||||||||||||||
Sbjct 179 -----T-TC--G--TC----T-T-AG-GTATATCCGGTGATTCCAATAGTTCAAGTACTG 221
Query 291 GAGCAAAGGCTGAATCTCATACTTCTTCCAGCAAAACAGGCACGAAAGTGATCTTTATAC 350
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||
Sbjct 222 GAGCAAAGGCTGAATCTCGTACTTCTTCCGGCAAAACAGGCACGAAAGTGATCCTCGTAT 281
Query 351 TGCTCGGGTTTGGTGCTGTAGCGGGACTTTCGTTCTTCTTGTACAAACTGTGGCAAAAGA 410
|||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 282 TGCTTGGGTTTGGTGCTGTAGCGGGAGTATCGTTCTTCCTGTACAAACTGTGGCAAAAGA 341
Query 411 AGAAAAGAGATGAGCAGTATGCTCGGCTATTGAAACTGTTTGAGGAAGATGATGAACTCG 470
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 342 AGAAAAGAGATGAGCAGTATGCTCGGTTATTGAAACTGTTTGAGGAAGATGATGAACTGG 401
Query 471 AGGTTGAATTAGGCCTACGTGATTAAGAAGAAAGCAATGTCTGAGGT-GTATGAG-ATGA 528
|||||||||||||||| |||||||||||| ||||||||||||||| | ||||||| | ||
Sbjct 402 AGGTTGAATTAGGCCTTCGTGATTAAGAAAAAAGCAATGTCTGAG-TAGTATGAGCAAGA 460
Query 529 TCATACAGGCATTGGAAATATTGAAGTATATATATACTTAAGCTGATGTAATTGTGATTG 588
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 461 TCATACAGGCATTGGAAATATTGAAGTATATATATACTTAAAATGATGTAATTGTGATTG 520
Query 589 ATCATTTCGAATTCTCTGGGTGATCTCGCCGTTTGAGGCTCTGGAGAAAGTGTTTCTTCA 648
||||||| ||||||||||| ||||||||||||| |||||||| |||||| |||| ||||
Sbjct 521 ATCATTTTGAATTCTCTGGCTGATCTCGCCGTTGGAGGCTCTAGAGAAATTGTT-CTTCT 579
Query 649 TTAGCGTTAGGTCAATTATTGTAAAACATTTAAATTTCTCAACTTCTTCCATGTTCTTTG 708
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 580 TTAGCGTTAGGTCAATTCTTGTAAAACAATTAAATTTCTCAACTTCTTCCATGTTCTTTG 639
Query 709 ATTTGTTGCTTGTACAATTTAGATATTTGTCTCAGATCAACCAAGAATCATACATAT 765
||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 640 ATTTGCCATTTTTACAATTTAGATATTTGTCTCGGATCAACCAAGAATCATACATAT 696
> Ahg919723 jgi|Araly1|919723|scaffold_101004.1
Length=358
Score = 228 bits (123), Expect = 6e-59
Identities = 211/252 (84%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 261 TATCTGGTGATCCCAATAGTTCAAGTACTGGAG-CAAAGGCTGAATCTCATACTTCTTCC 319
|||| |||||| |||| | | ||| | | |||| | ||||| ||||||||||||||||||
Sbjct 103 TATCCGGTGATTCCAAGAATACAAATGCAGGAGTC-AAGGCAGAATCTCATACTTCTTCC 161
Query 320 AGCAAAACAGGCACGAAAGTGATCTTTATACTGCTCGGGTTTGGTG-CTGTAGCGG-GAC 377
|||||||||||||| ||||| ||| | |||||| | || |||| || |||| |||| |
Sbjct 162 AGCAAAACAGGCACAAAAGTAATCCTCATACTGGTTGGATTTG-TGGCTGTGGCGGTG-- 218
Query 378 TT-TCGTTCTT-CTTGTACAAACTGTGGCAAAAGAAGAAAAGAGATGAGCAGTATGCTCG 435
|| |||||||| || ||||| || |||||||||||||||||||| |||||||||||| |
Sbjct 219 TTCTCGTTCTTTCTA-TACAAGCTATGGCAAAAGAAGAAAAGAGACGAGCAGTATGCTAG 277
Query 436 GCTATTGAAACTGTTTGAGGAAGATGATGAACTCGAGGTTGAATTAGGCCTACGTGATTA 495
|| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 278 ACTCTTGAAGCTGTTTGAGGAAGATGATGAACTGGAGGTTGAATTAGGCCTTCGAGATTA 337
Query 496 AGAAGAAAGCAA 507
| || || ||||
Sbjct 338 A-AA-AACGCAA 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5