BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57770.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314966 jgi|Araly1|314966|fgenesh1_pm.C_scaffold_1003746 2610 0.0
> Ahg314966 jgi|Araly1|314966|fgenesh1_pm.C_scaffold_1003746
Length=1737
Score = 2610 bits (1413), Expect = 0.0
Identities = 1638/1744 (94%), Gaps = 26/1744 (1%)
Strand=Plus/Plus
Query 59 ATGGCCGCCAATTTCTGCGGCTTGACGCTTCAGTCTCCGTTTCTCTATAACTTTAGTCGC 118
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 1 ATGGCCGCCAATTTCTGCGGCTCGACGCTTCAGTCTCCGTTTCTCTGTAACTTTAGACGA 60
Query 119 CCAACGATCAGATCTTCTTCCTTCATACGGTCTTCGTCTTCTTCATCAGCCTCTTCCAAT 178
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 61 CCAACGATCAGATCTTCTTCCTTCATAC-G-----GTCTTCTTCATCAACCTCTTCCAAT 114
Query 179 GGCAATC-T----T-AAAGAACCCTTCTCTGGGGAGCCTGAAGCAGATGTTGTGGTAATT 232
||||||| | | |||||| | |||||||| ||||||||||||||||||||||| |||
Sbjct 115 GGCAATCTTCCCATCAAAGAATCTTTCTCTGGAGAGCCTGAAGCAGATGTTGTGGTTATT 174
Query 233 GGAAGTGGGATAGGAGGATTATGTTGTGGTGCATTGTTAGCTAGATATGATCAGGATGTG 292
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 175 GGAAGTGGCATAGGAGGATTATGTTGTGGTGCATTGTTAGCTAGGTATGATCAGGATGTG 234
Query 293 ATTGTTTTGGAGAGTCATGACCATCCCGGTGGCGCTGCTCATTCCTTTGAGATCAAAGGG 352
||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 235 GTTGTTTTGGAGAGCCATGACCATCCCGGTGGCGCGGCTCATTCATTTGAGATCAAAGGG 294
Query 353 TACAAGTTTGACTCAGGTCCTTCTCTGTTTTCTGGTTTACAATCGCGAGGTCCTCAAGCA 412
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 295 TACAAGTTTGACTCAGGTCCTTCTCTGTTTTCTGGTTTGCAATCACGAGGTCCTCAAGCC 354
Query 413 AATCCACTTGCTCAAGTTCTTGATGCTTTAGGGGAATCATTTCCATGTAAG-AAATATGA 471
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 355 AATCCACTTGCTCAAGTTCTTGATGCTTTAGGGGAATCACTTCCATGT-AGCAAATATGA 413
Query 472 TTCTTGGATGGTTTACTTACCCGAAGGTGATTTCTTGTCACGAATAGGCCCTACGGATTT 531
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 414 TTCTTGGATGGTTTATTTACCCGAAGGAGATTTCTTGTCACGTATAGGCCCTACCGATTT 473
Query 532 CTTTAAGGATCTTGAGAAATATGCCGGTCCAAGCGCAGTGCAGGAGTGGGAAAAG---C- 587
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 474 CTTTAAGGATCTAGAGAAATATGCCGGTCCTAGCGCAGTCCAGGAGTGGGAAAAGCTTCT 533
Query 588 --T---T--CT-TGGAGCAATACTCCCTCTGTCTTCTGCTGCTATGGCGTTACCACCATT 639
| | || ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 534 TGTGGGTGCCTATGGAGCAATACTCCCACTGTCTTCTGCTGCTATGGCGTTACCACCATT 593
Query 640 GTCTATTCGCGGGGATCTTGGTGTTCTCTCCACAGCTGCTGCTAGATATGCTCCTTCGCT 699
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 594 GTCTATTCGCGGGGATCTTGGTGTTCTCTCTACGGCTGCTGCTAGATATGCTCCTTCCCT 653
Query 700 TTTAAAATCTTTTATCAAAATGGGTCCTAAAGGAGCGTTGGGAGCGACAAAACTTCTCCG 759
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 654 GATGAAATCTTTTATCAAAATGGGTCCTAAAGGAGCGTTGGGAGCCACAAAGCTTCTCCG 713
Query 760 CCCGTTCTCGGAGATCGTTGATTCTTTGGAGTTAAAAGACCCGTTTATACGAAACTGGAT 819
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 714 CCCGTTCTCGGAGATCGTTGATTCTTTGGAGTTGAAAGATCCGTTTATACGAAACTGGAT 773
Query 820 TGATCTTCTCGCATTCCTGCTCGCAGGGGTCAAATCTGATGGCATACTTTCAGCAGAGAT 879
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 774 TGATCTTCTCGCATTTCTTCTCGCAGGGGTCAAATCTGATGGAATACTTTCAGCAGAGAT 833
Query 880 GATCTACATGTTTGCAGAATGGTACAAGCCAGGCTGCACATTGGAGTACCCTATTGATGG 939
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 834 GATCTACATGTTTGCGGAATGGTACAAGCCAGGCTGCACACTGGAGTACCCTATTGATGG 893
Query 940 CACCGGTGCTGTGGTTGAAGCGCTTGTCCGTGGCTTGGAGAAGTTTGGTGGACGTCTATC 999
| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 894 AAGCGGTGCGGTGGTTGAAGCGCTTGTCCGTGGCTTAGAGAAGTTTGGAGGACGTCTGTC 953
Query 1000 TCTTAAAAGTCATGTCGAAAACATTGTTATCGAGAATGGTAAAGCTGTTGGAGTCAAGCT 1059
|||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||||
Sbjct 954 TCTTAATAGTCATGTTGAGAACATTGTCATCGAGGATGGTAAAGCTGTTGGAGTCAAGCT 1013
Query 1060 AAGGAATGGTCAATTTGTTCGAGCTAGAAAAGCTGTGGTTAGCAATGCATCGATGTGGGA 1119
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAAGAATGGTCAATTCATTCGAGCTAGAAAAGCTGTGGTTAGCAATGCATCGATGTGGGA 1073
Query 1120 TACTTTAAAGCTCTTACCTCCAGGAGCTCTCCCAGAATCATATGTAAAAGGTGTGAACAC 1179
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1074 TACTTTAAAGCTCTTACCTCCAGGAGCTCTCCCAGATTCATACGTAAAAGGTGTGAACAC 1133
Query 1180 AACACCTCAATGTGAATCATTCATGCATCTTCACTTGGGATTCGACGCAGAGGGAATAGC 1239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AACACCTCAATGTGAGTCATTCATGCATCTTCACTTGGGATTCGACGCAGAGGGAATAGC 1193
Query 1240 AGATGATCTTGAGATTCATCATATCGTTGTGAATGACTGGGACCGCGGTGTGGATGCTGA 1299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGATGACCTTGAGATTCATCATATCGTTGTGAATGACTGGGACCGCGGTGTGGATGCTGA 1253
Query 1300 CCAGAATGTGGTTCTGATATCTGTCCCTAGTGTTCTTAGCCCAAACCTTGCACCACCGGG 1359
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 CCAGAATGTGGTTCTGATATCAGTCCCTAGTGTTCTTAGCCCAAACCTTGCGCCACCGGG 1313
Query 1360 AAAACATGTTCTACACGCTTACTGTCCTGGAACCGAACCTTTCGGTCTGTGGGAAGGTCT 1419
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 1314 AAAACATGTTCTACACGCTTACTGTCCTGGAACTGAACCTTTCAGTCTCTGGGAAGGTCT 1373
Query 1420 TGATAGAAGAAGTGCCGAGTACAAGAATCTCAAATCCCAACGGTCCGAGGTGATGTGGAG 1479
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1374 TGACAGAAGAAGTGCGGAGTACAAGAATCTCAAATCCCAACGGTCTGAGGTGATGTGGAG 1433
Query 1480 AGCGGTTGAGCGGGCATTAGGGCTAGGGTTCAAAAGAGAAAAGTGCGAGGTGAGTTTGGT 1539
|||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 1434 AGCGGTGGAACGGGCATTAGGGCCCGGGTTTAAAAGAGAAAAGTGCGAGGTGAGTTTGAT 1493
Query 1540 TGGAACACCATTGACGCATCAGAGGTTTCTAAGGAGGAATAGAGGAACATATGGGCCTGC 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGGAACACCATTGACGCATCAGAGGTTTCTAAGGAGGAATAGAGGAACATATGGGCCTGC 1553
Query 1600 AATAGAGGCAGGTAAAGGTACTTTTCCTGGCCATTCCACTCCCATTCCGCAGCTTTTGTG 1659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AATAGAGGCTGGTAAAGGTACTTTTCCTGGCCATTCCACTCCCATTCCGCAGCTTTTGTG 1613
Query 1660 TTGCGGTGACTCGACCTTTCCCGGGATCGGAGTTCCTGCAGTGGCAGCTAGCGGCGCGAT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1614 TTGCGGTGACTCGACCTTTCCCGGGATCGGAGTTCCTGCAGTGGCAGCTAGTGGCGCGAT 1673
Query 1720 TGTGGCGAATTCGCTAGTTCCTGTTTCCAAGCATTCACAGCTTCTTGATGCCATTGGCTT 1779
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1674 TGTGGCGAATTCGCTAGTTCCTGTTTCTAAGCATTCCCAGCTTCTTGATGCTATTGGCTT 1733
Query 1780 GTAG 1783
|||
Sbjct 1734 ATAG 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5