BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57780.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907679 jgi|Araly1|907679|Al_scaffold_0002_760 660 0.0
Ahg332984 jgi|Araly1|332984|fgenesh1_pm.C_scaffold_9000012 100 1e-20
> Ahg907679 jgi|Araly1|907679|Al_scaffold_0002_760
Length=732
Score = 660 bits (357), Expect = 0.0
Identities = 402/424 (95%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 373 AATGCTGATAAACCTGAAACAAGTATAATGGAAGTGGAGTTCGATATACCATTTCTCTGC 432
|||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 310 AATGATGATAAACCGGAAACAAGTATAATGGAAGTGGAGTTCGGTATACCATTTCTCTGT 369
Query 433 GAGAAATACGAG-AAAGATTTTGGAAAAGTTATTTCCAAATGCACAGGTGTTGAAACATA 491
|| ||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 370 GAAAAATACGAGAAAAG-TTTTAGAAAAGTTATTTCCAAATGGACAGGTGTTGAAACATA 428
Query 492 TGTAGTGGATCTAGAAAATAAAAAGGTTGTGGTCATTGGAAACTTTGATAAGGATGAACT 551
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 429 TGTAATGGATCTAGAAAATAAAAAGGTTGTGGTCATTGGTAACTTTGATAAGGATGAATT 488
Query 552 GTCGAGAAAACTTAATAAGAAGATGCATCAAAAGATTAAAAAAGCTGAAAAGGAAAGACA 611
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 489 GTCGAGAAAACTTAATAAGAAGATGCAACAAAAGATTAAAAAGGCTGAAAAGGAAAGGCA 548
Query 612 GGAGTGGGAATCTGAAATGATGTTAAGGGAGGCTGAAGAAGAAAAAAGACTTGCAGATAT 671
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 549 GGAGTGGGAATCTGAAATGATGTTAAAGGAGGCTGAAGAAGAAAAAAGAGTTGCAGAGAT 608
Query 672 TTATGAAGAAATCGACAAGGATAGAAATGTATCTCTCAACCCAATTACTGATTATGAAAA 731
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 609 TTATGAAGAAATCGACAAGGATAGAAATGTATATCTCAACCCAATTACTGATTATGAAAA 668
Query 732 GGAGATGGCCAAACATTATTACATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTC 791
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 669 GGAGATGGCTAAACATTATAACATGTTCAGTGATGAAAATCCTAATGCATGTTCTATTTC 728
Query 792 GTAA 795
||||
Sbjct 729 GTAA 732
Score = 492 bits (266), Expect = 2e-138
Identities = 306/324 (94%), Gaps = 8/324 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGGTTAAAGCAGCCACAAGGAATCACAACTATGATGGGTTGTTGGTTAACG 60
||||||| ||||| || ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGGGTTCCTGGTT-AA--AGCCACAAGGAATCACAACTATGATGGGTCGCTGGTTAACG 57
Query 61 AAATCAAGAGAAAACATTCTCGACAATGTAATTGTAACAGATGCCAAGTTGAAGATTTCG 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 58 AAATCAAGAGAAAACATTCTCGACAATGTAATTGTAACAGATGCCGAGTTGAAGATTTCG 117
Query 121 ATGAATTTTGAAGATTGCGCGAAAAAGATCAGAAAAGTTGCTTGCCAATTCGAAG---TT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 118 ATGAATTTTGAAGATTGCGCGAAAAAGATCAGAAAAGTTGCTTGCCAATTCGAAGGAGTT 177
Query 178 AAATCATGCATAACGGATATAGATGATCAAAAAGTCCTGGTCAGTGGTGA-TTTCAATTT 236
||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 178 AAATCATGCATCACGGATATAGATGATCAAAAAGTCTTGGTCAGTGGTGAATTT-AATTT 236
Query 237 GCATAAATTGGTGAAGACTCTCAAGaaaaaaaCTGGTAAAAAGATAGAAATTGTGACGAA 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 GCATAAATTGGTGAAGACTCTCAAGAAAAAAACTGGTAAAAAGATAGAAATTGTGATGAA 296
Query 297 GAATGAGAAATCTAGTGAAGATAA 320
|||||||||||||| ||| |||||
Sbjct 297 GAATGAGAAATCTAATGATGATAA 320
> Ahg332984 jgi|Araly1|332984|fgenesh1_pm.C_scaffold_9000012
Length=582
Score = 100 bits (54), Expect = 1e-20
Identities = 102/124 (82%), Gaps = 7/124 (6%)
Strand=Plus/Plus
Query 674 ATGAAGAAATCGACAA-GGATAGAAATGTATCTCTCAACCCAATTACTGATTATGA-AAA 731
|||||||||| || || ||||||| ||| | | | |||||| || |||| |||| |||
Sbjct 464 ATGAAGAAATTGA-AATGGATAGAGGTGTTTATATGTACCCAAATAGTGATGATGAGAAA 522
Query 732 GGAGATGGCCAAACATTATTACATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTC 791
||| |||||||| | || | |||||||||||||||||||||||||||||||| |||||
Sbjct 523 -GAGGTGGCCAAATA-TA-T-GATGTTTAGTGATGAAAATCCTAATGCATGTTCGATTTC 578
Query 792 GTAA 795
||||
Sbjct 579 GTAA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5