BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57780.1 Length=795 Score E Sequences producing significant alignments: (Bits) Value Ahg907679 jgi|Araly1|907679|Al_scaffold_0002_760 660 0.0 Ahg332984 jgi|Araly1|332984|fgenesh1_pm.C_scaffold_9000012 100 1e-20 > Ahg907679 jgi|Araly1|907679|Al_scaffold_0002_760 Length=732 Score = 660 bits (357), Expect = 0.0 Identities = 402/424 (95%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 373 AATGCTGATAAACCTGAAACAAGTATAATGGAAGTGGAGTTCGATATACCATTTCTCTGC 432 |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 310 AATGATGATAAACCGGAAACAAGTATAATGGAAGTGGAGTTCGGTATACCATTTCTCTGT 369 Query 433 GAGAAATACGAG-AAAGATTTTGGAAAAGTTATTTCCAAATGCACAGGTGTTGAAACATA 491 || ||||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||| Sbjct 370 GAAAAATACGAGAAAAG-TTTTAGAAAAGTTATTTCCAAATGGACAGGTGTTGAAACATA 428 Query 492 TGTAGTGGATCTAGAAAATAAAAAGGTTGTGGTCATTGGAAACTTTGATAAGGATGAACT 551 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 429 TGTAATGGATCTAGAAAATAAAAAGGTTGTGGTCATTGGTAACTTTGATAAGGATGAATT 488 Query 552 GTCGAGAAAACTTAATAAGAAGATGCATCAAAAGATTAAAAAAGCTGAAAAGGAAAGACA 611 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 489 GTCGAGAAAACTTAATAAGAAGATGCAACAAAAGATTAAAAAGGCTGAAAAGGAAAGGCA 548 Query 612 GGAGTGGGAATCTGAAATGATGTTAAGGGAGGCTGAAGAAGAAAAAAGACTTGCAGATAT 671 |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 549 GGAGTGGGAATCTGAAATGATGTTAAAGGAGGCTGAAGAAGAAAAAAGAGTTGCAGAGAT 608 Query 672 TTATGAAGAAATCGACAAGGATAGAAATGTATCTCTCAACCCAATTACTGATTATGAAAA 731 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 609 TTATGAAGAAATCGACAAGGATAGAAATGTATATCTCAACCCAATTACTGATTATGAAAA 668 Query 732 GGAGATGGCCAAACATTATTACATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTC 791 ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 669 GGAGATGGCTAAACATTATAACATGTTCAGTGATGAAAATCCTAATGCATGTTCTATTTC 728 Query 792 GTAA 795 |||| Sbjct 729 GTAA 732 Score = 492 bits (266), Expect = 2e-138 Identities = 306/324 (94%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 1 ATGGGTTGTTGGTTAAAGCAGCCACAAGGAATCACAACTATGATGGGTTGTTGGTTAACG 60 ||||||| ||||| || ||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 ATGGGTTCCTGGTT-AA--AGCCACAAGGAATCACAACTATGATGGGTCGCTGGTTAACG 57 Query 61 AAATCAAGAGAAAACATTCTCGACAATGTAATTGTAACAGATGCCAAGTTGAAGATTTCG 120 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 58 AAATCAAGAGAAAACATTCTCGACAATGTAATTGTAACAGATGCCGAGTTGAAGATTTCG 117 Query 121 ATGAATTTTGAAGATTGCGCGAAAAAGATCAGAAAAGTTGCTTGCCAATTCGAAG---TT 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 118 ATGAATTTTGAAGATTGCGCGAAAAAGATCAGAAAAGTTGCTTGCCAATTCGAAGGAGTT 177 Query 178 AAATCATGCATAACGGATATAGATGATCAAAAAGTCCTGGTCAGTGGTGA-TTTCAATTT 236 ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||| Sbjct 178 AAATCATGCATCACGGATATAGATGATCAAAAAGTCTTGGTCAGTGGTGAATTT-AATTT 236 Query 237 GCATAAATTGGTGAAGACTCTCAAGaaaaaaaCTGGTAAAAAGATAGAAATTGTGACGAA 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 237 GCATAAATTGGTGAAGACTCTCAAGAAAAAAACTGGTAAAAAGATAGAAATTGTGATGAA 296 Query 297 GAATGAGAAATCTAGTGAAGATAA 320 |||||||||||||| ||| ||||| Sbjct 297 GAATGAGAAATCTAATGATGATAA 320 > Ahg332984 jgi|Araly1|332984|fgenesh1_pm.C_scaffold_9000012 Length=582 Score = 100 bits (54), Expect = 1e-20 Identities = 102/124 (82%), Gaps = 7/124 (6%) Strand=Plus/Plus Query 674 ATGAAGAAATCGACAA-GGATAGAAATGTATCTCTCAACCCAATTACTGATTATGA-AAA 731 |||||||||| || || ||||||| ||| | | | |||||| || |||| |||| ||| Sbjct 464 ATGAAGAAATTGA-AATGGATAGAGGTGTTTATATGTACCCAAATAGTGATGATGAGAAA 522 Query 732 GGAGATGGCCAAACATTATTACATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTC 791 ||| |||||||| | || | |||||||||||||||||||||||||||||||| ||||| Sbjct 523 -GAGGTGGCCAAATA-TA-T-GATGTTTAGTGATGAAAATCCTAATGCATGTTCGATTTC 578 Query 792 GTAA 795 |||| Sbjct 579 GTAA 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29354646090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5