BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57790.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925271 jgi|Araly1|925271|scaffold_200832.1 848 0.0
> Ahg925271 jgi|Araly1|925271|scaffold_200832.1
Length=751
Score = 848 bits (459), Expect = 0.0
Identities = 574/629 (91%), Gaps = 9/629 (1%)
Strand=Plus/Plus
Query 546 AAG-GATTATGATCCAGGCCATGTCACTATCCGTACTTGGAGTCCGGGTCAAACGATGTG 604
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 125 AAGAGATTATGATCCTGGCCATGTCACTATTCGTACTTGGAGTCCGGGTCAAACGATGTG 184
Query 605 GACTTCAATGCAGGTTGAGTCTCAATTCCTTGATGTTGATCATAACAATGTTGTTTTCTC 664
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 185 GACTTCAATGCAGGTTGAGTCTCAATTCCTTGATGTTGAACATAACAATGTTGTTTTCTC 244
Query 665 AAATGGCGTGTTTTACTGTCTTAACCAAAGAAACCACGTTGCGGTTTTTGATCCGTCTTT 724
|||||| |||||||||||||| || | |||||||| |||||||| ||||||||| |||||
Sbjct 245 AAATGGTGTGTTTTACTGTCTCAATCGAAGAAACCTCGTTGCGGGTTTTGATCCCTCTTT 304
Query 725 ACGTACATGGAATGT-TCTTGATGTACCGCCACCTAGATGTCCCGATGATAAGAGTTGGA 783
| ||||||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||
Sbjct 305 AAGTACATGGAATGTGT-TTGATTTACCGCCACCTAGATGTCTCGATGAGAAGAGTTGGA 363
Query 784 ATGAAGGAAAGTTCATGGTAGG-TTATAAAGGTGACATACTTGTGATTCGTACATATGAA 842
|| |||||||||||||||| || ||||||||| |||||| ||||||| | ||||| ||||
Sbjct 364 ATCAAGGAAAGTTCATGGT-GGATTATAAAGGAGACATATTTGTGATACATACATGTGAA 422
Query 843 AATAAGGACCCTTTGGTGTTTAAACTCGATCTTACTCGAGGTATTTGGGAGGAGAAGGAT 902
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 423 AACAAGGATCCTTTGGTGTTTAAACTCGATCTTACTCGAGGTATTTGGGAGCTGAAGGAT 482
Query 903 ACACTCGGTAGTTTAACTATTTTTGTGAGTAGGAAGTCATGTGAATCGAGAACATATGTT 962
||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||
Sbjct 483 ACACTCGGTAGTTTAACTATTTTTGCGAGTAGTAAGTCATGTGAATCCAGAACTTATGTT 542
Query 963 AAGGATGGGATGTTAAGGAATAGTGTATACTTCCCTGAGTTGTGTTACAATGAGAAACAA 1022
|| || |||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 543 AACGAGGGGATGTTAAGGAATAGTGTGTACTTTCCTAAGTTGTGTTACAATGAGAAACGT 602
Query 1023 AGTGTGGTGTATTCGTTTGATGAAGGGAGGTACCACCTGCGAGAGCATGATCTTGATTGG 1082
|||||| ||||||||||||||||||||| ||||||| || |||||| |||||||||||
Sbjct 603 TGTGTGGCGTATTCGTTTGATGAAGGGAGATACCACCCGCTTGAGCATAATCTTGATTGG 662
Query 1083 GGAAAACAGCTTTCATCTGATAACATTTGGATCGAGCCTCCCAAGAACGCTTTTGAGCTA 1142
||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGAAACCTGCTTTCTTCTAATAACATTTGGATCGAGCCTCCCAAGAACGCTTTTGAGCTA 722
Query 1143 GTTTAAAAGTA--T-TTTTG-CAATGTTT 1167
||||||||||| | ||||| ||||||||
Sbjct 723 GTTTAAAAGTACATATTTTGGCAATGTTT 751
Score = 156 bits (84), Expect = 5e-37
Identities = 107/117 (91%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 83 ATCCATCATGAGCG-TGAATACCAATGAA-GG--GTCCAAGAACCTGTGGAAGGATCTTC 138
||| |||||||||| |||| | ||||||| || |||||||||| |||||||||||||||
Sbjct 14 ATCTATCATGAGCGTTGAA-AACAATGAAGGGTCGTCCAAGAACATGTGGAAGGATCTTC 72
Query 139 CTTTAGAGCTTCTGAGTTCAGTAATGACTTTTCTTGAAATCAAAGATAACGTAAGAG 195
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 73 CTTTAGAGCTTCTGAGTTCAGTAATGGCTTATCTTGAAATCAAAGATAACGTAAGAG 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5