BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57850.1
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925249 jgi|Araly1|925249|scaffold_200810.1 728 0.0
Ahg925264 jgi|Araly1|925264|scaffold_200825.1 320 5e-87
> Ahg925249 jgi|Araly1|925249|scaffold_200810.1
Length=514
Score = 728 bits (394), Expect = 0.0
Identities = 451/477 (95%), Gaps = 10/477 (2%)
Strand=Plus/Plus
Query 1 ATGACGATTTTGTCTCTCGCCAATGACGACTTCCATCGAGTATTCCTCAGTTTCCGAGGA 60
|||||||||| ||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 21 ATGACGATTTCGTCTCTCACCGATGAC-AC--CCATCGAGTATTCCTCAGTTTCCGAGGA 77
Query 61 GATCAGTTGCGCTACAGCTTTGTCAGCCACCTTCTTGACGCCTTTGAGAGACATGGAATC 120
|||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 78 GATCAGTTGCGCTATAGCTTCGTCAGCCACCTTCTTGATGCCTTTAAGAGACATGGAATC 137
Query 121 TTGTGTTTTGTAGACAAAGACGAG---CTAAGGGGAAAAACCATGACAAACCTTTTTGTA 177
|||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 138 TTGTGTTTCGTACACAAAGACGAGCATCTAAGGGGAAAAAACATGACAAACCTTTTTGTA 197
Query 178 AGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTCTAGTAGGTATGCGGAGTCGAGT 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 198 AGGATTAAAGAGTCGAAGATCGCGCTAGTTATCTTCTCTAGTAGGTATGCGGAGTCGAGT 257
Query 238 TGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGCGGATAAAGGAAAGCTCCAAGTC 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 258 TGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGTGGATAAAGGAAAGCTCCAAGTC 317
Query 298 ATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAGAGGACAGACCGGTGAGTTTGGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 ATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAGAGGACAGACCGGTGAGTTTGGT 377
Query 358 GA-AACGTTTTGGGCGCTTGC-AAGAACTTCTCGAGGAGATCAGATCATGGAGTGGAAGG 415
|| || ||||||||||||||| |||| |||| |||| |||||||||||||||||||||||
Sbjct 378 GACAA-GTTTTGGGCGCTTGCGAAGA-CTTCCCGAGTAGATCAGATCATGGAGTGGAAGG 435
Query 416 AAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCCTTGGGAGACAAAAGGTACT 472
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 436 AAGCCCTAGAGTGTATTTCCAACAAGATGGGTCTGTCCTTGGGAGACAAAAGGTACT 492
> Ahg925264 jgi|Araly1|925264|scaffold_200825.1
Length=660
Score = 320 bits (173), Expect = 5e-87
Identities = 349/434 (80%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 39 AGTATTCCTCAGTTTCCGAGGAGATCAGTTGCGCTACAGCTTTGTCAGCCACCTTC-TTG 97
||||||| ||| || | |||| | || |||| |||||||| |||||||||| || ||
Sbjct 34 AGTATTCTTCAATTACAGAGGTGCGGAGCTGCGTTACAGCTTCGTCAGCCACC-TCAGTG 92
Query 98 ACGCCTTTGAGAGACATGGAATCTTGTGT-TTTGTAGACAAAGACGAGCTAAGGGG-AAA 155
| ||||||||||||||||| ||| | | || ||||||| | || || ||||| |||
Sbjct 93 ATGCCTTTGAGAGACATGGTATCAACT-TCTTCCTAGACAATCATGAACTGAGGGGCAAA 151
Query 156 AACCATGACAAACCTTTTTGTAAGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTC 215
| | || |||| || ||||| | || ||||||||| ||||||||||| ||||||||
Sbjct 152 GATCTTG-CAAATCTCTTTGTGCGAATCGAAGAGTCGAGGATCGCACTAGCCATCTTCTC 210
Query 216 TAGTAGGTATGCGGAGTCGAGTTGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGC 275
| || ||||| |||||||||||||| ||||||||||| ||||| ||||||||| |||
Sbjct 211 CACAAGATATGCAGAGTCGAGTTGGTGTATGGATGAGCTTGTGAAAATGAAGAAATGTGT 270
Query 276 GGATAAAGGAAAGCTCCAAGTCATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAG 335
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 271 GGATAAAGGAAAGCTCCAAGTCATTCCTATCTTTTACAAGATTAGGGCAAGAGATGTGAG 330
Query 336 AGGACAGACCGGTGAGTTTGGTGA-AACGTTTTGGGCGCTTGCAAGAACTT-CTCGAGGA 393
||||||||| || |||||||||| || ||||||| ||| |||| | || |||| |||
Sbjct 331 AGGACAGACAGGAAAGTTTGGTGACAAA-TTTTGGGAGCTAGCAA-AGGTTTCTCGTGGA 388
Query 394 GATCAGATCATGGAGTGGAAGGAAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCC 453
||| |||||| | |||||||||| || |||| ||||| || |||||||| |||||
Sbjct 389 GATAAGATCAAGAAGTGGAAGGATGCTTTAGAATGTATCACCGGGAAGATGGGTTTGTCC 448
Query 454 TTGGGAGACAAAAG 467
|||||| | |||||
Sbjct 449 TTGGGA-A-AAAAG 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17284481817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5