BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57850.1 Length=477 Score E Sequences producing significant alignments: (Bits) Value Ahg925249 jgi|Araly1|925249|scaffold_200810.1 728 0.0 Ahg925264 jgi|Araly1|925264|scaffold_200825.1 320 5e-87 > Ahg925249 jgi|Araly1|925249|scaffold_200810.1 Length=514 Score = 728 bits (394), Expect = 0.0 Identities = 451/477 (95%), Gaps = 10/477 (2%) Strand=Plus/Plus Query 1 ATGACGATTTTGTCTCTCGCCAATGACGACTTCCATCGAGTATTCCTCAGTTTCCGAGGA 60 |||||||||| ||||||| || ||||| || |||||||||||||||||||||||||||| Sbjct 21 ATGACGATTTCGTCTCTCACCGATGAC-AC--CCATCGAGTATTCCTCAGTTTCCGAGGA 77 Query 61 GATCAGTTGCGCTACAGCTTTGTCAGCCACCTTCTTGACGCCTTTGAGAGACATGGAATC 120 |||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||| Sbjct 78 GATCAGTTGCGCTATAGCTTCGTCAGCCACCTTCTTGATGCCTTTAAGAGACATGGAATC 137 Query 121 TTGTGTTTTGTAGACAAAGACGAG---CTAAGGGGAAAAACCATGACAAACCTTTTTGTA 177 |||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 138 TTGTGTTTCGTACACAAAGACGAGCATCTAAGGGGAAAAAACATGACAAACCTTTTTGTA 197 Query 178 AGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTCTAGTAGGTATGCGGAGTCGAGT 237 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 198 AGGATTAAAGAGTCGAAGATCGCGCTAGTTATCTTCTCTAGTAGGTATGCGGAGTCGAGT 257 Query 238 TGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGCGGATAAAGGAAAGCTCCAAGTC 297 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 258 TGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGTGGATAAAGGAAAGCTCCAAGTC 317 Query 298 ATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAGAGGACAGACCGGTGAGTTTGGT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 ATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAGAGGACAGACCGGTGAGTTTGGT 377 Query 358 GA-AACGTTTTGGGCGCTTGC-AAGAACTTCTCGAGGAGATCAGATCATGGAGTGGAAGG 415 || || ||||||||||||||| |||| |||| |||| ||||||||||||||||||||||| Sbjct 378 GACAA-GTTTTGGGCGCTTGCGAAGA-CTTCCCGAGTAGATCAGATCATGGAGTGGAAGG 435 Query 416 AAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCCTTGGGAGACAAAAGGTACT 472 |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 436 AAGCCCTAGAGTGTATTTCCAACAAGATGGGTCTGTCCTTGGGAGACAAAAGGTACT 492 > Ahg925264 jgi|Araly1|925264|scaffold_200825.1 Length=660 Score = 320 bits (173), Expect = 5e-87 Identities = 349/434 (80%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 39 AGTATTCCTCAGTTTCCGAGGAGATCAGTTGCGCTACAGCTTTGTCAGCCACCTTC-TTG 97 ||||||| ||| || | |||| | || |||| |||||||| |||||||||| || || Sbjct 34 AGTATTCTTCAATTACAGAGGTGCGGAGCTGCGTTACAGCTTCGTCAGCCACC-TCAGTG 92 Query 98 ACGCCTTTGAGAGACATGGAATCTTGTGT-TTTGTAGACAAAGACGAGCTAAGGGG-AAA 155 | ||||||||||||||||| ||| | | || ||||||| | || || ||||| ||| Sbjct 93 ATGCCTTTGAGAGACATGGTATCAACT-TCTTCCTAGACAATCATGAACTGAGGGGCAAA 151 Query 156 AACCATGACAAACCTTTTTGTAAGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTC 215 | | || |||| || ||||| | || ||||||||| ||||||||||| |||||||| Sbjct 152 GATCTTG-CAAATCTCTTTGTGCGAATCGAAGAGTCGAGGATCGCACTAGCCATCTTCTC 210 Query 216 TAGTAGGTATGCGGAGTCGAGTTGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGC 275 | || ||||| |||||||||||||| ||||||||||| ||||| ||||||||| ||| Sbjct 211 CACAAGATATGCAGAGTCGAGTTGGTGTATGGATGAGCTTGTGAAAATGAAGAAATGTGT 270 Query 276 GGATAAAGGAAAGCTCCAAGTCATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAG 335 ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| Sbjct 271 GGATAAAGGAAAGCTCCAAGTCATTCCTATCTTTTACAAGATTAGGGCAAGAGATGTGAG 330 Query 336 AGGACAGACCGGTGAGTTTGGTGA-AACGTTTTGGGCGCTTGCAAGAACTT-CTCGAGGA 393 ||||||||| || |||||||||| || ||||||| ||| |||| | || |||| ||| Sbjct 331 AGGACAGACAGGAAAGTTTGGTGACAAA-TTTTGGGAGCTAGCAA-AGGTTTCTCGTGGA 388 Query 394 GATCAGATCATGGAGTGGAAGGAAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCC 453 ||| |||||| | |||||||||| || |||| ||||| || |||||||| ||||| Sbjct 389 GATAAGATCAAGAAGTGGAAGGATGCTTTAGAATGTATCACCGGGAAGATGGGTTTGTCC 448 Query 454 TTGGGAGACAAAAG 467 |||||| | ||||| Sbjct 449 TTGGGA-A-AAAAG 460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17284481817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5