BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57860.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1 963 0.0
Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1 902 0.0
Ahg919727 jgi|Araly1|919727|scaffold_101008.1 612 1e-174
Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1 599 9e-171
> Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1
Length=687
Score = 963 bits (521), Expect = 0.0
Identities = 584/613 (95%), Gaps = 10/613 (2%)
Strand=Plus/Plus
Query 27 AGAGGAGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCG 86
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 33 AGA-GAGGAAAAATGCCGGCGGGACACGGAGTGAGAGCGAGAACAAGAGATCTGTTCGCA 91
Query 87 AGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTC 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 AGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTC 151
Query 147 GGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTC 206
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 152 GGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCGCATAAGTTC 211
Query 207 TACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTC 266
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 212 TACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTC 271
Query 267 AACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTG 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 AACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTG 331
Query 327 CAACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAACAGAACGATGTGCTTAAG 386
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 332 CAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAG 391
Query 387 GCTG-ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAA 445
|||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 392 GCTGCA-GCTAAAGCTAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAA 450
Query 446 ACCGGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGT 505
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 451 ACCGGGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATGT 510
Query 506 TGTCAACGATCTCAAGGGTGGTTATTGAGTTGTTTCCATTTTATTATCATTCTCTACTCA 565
||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||
Sbjct 511 TGTCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCATTTT-T-ATCATTCTCTGTTCG 568
Query 566 GAATTTTTGCACTTGCTTT-TTT----AATTATGTTTTTGTATCAAACAAGACTGATTTA 620
||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 569 GAATTTTTGCACTTGCTTTGTTTTTTTAATGATGTTTTTGTATCAAACAAGACTGATTTC 628
Query 621 TATACGATATGAG 633
|||| | ||||||
Sbjct 629 TATATGGTATGAG 641
> Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1
Length=559
Score = 902 bits (488), Expect = 0.0
Identities = 538/562 (96%), Gaps = 4/562 (1%)
Strand=Plus/Plus
Query 24 GAGAGAGGAGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTC 83
|||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 GAGAGAAGAGGAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTT 60
Query 84 GCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAG 143
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAG 120
Query 144 GTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAG 203
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAG 180
Query 204 TTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAA 263
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAA 240
Query 264 GTCAACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCAT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCAACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCAT 300
Query 324 GTGCAACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAACAGAACGATGTGCTT 383
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 301 GTGCAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTT 360
Query 384 AAGGCTG-ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCC 442
||||||| | |||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 361 AAGGCTGCA-GCTAAAGCCAGAGGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCC 419
Query 443 TAAACCGGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGA 502
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CAAACCAGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGA 479
Query 503 TGTTGTCAACGATCTCAAGGGTGGTTATTGAGTTGTTTCCATTTTATTATCATTCTCTAC 562
|||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||| |
Sbjct 480 TGTTGTCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCAGTTT-T-ATCATTCTCTGC 537
Query 563 TCAGAATTTTTGCACTTGCTTT 584
||||||||||||||||||||||
Sbjct 538 TCAGAATTTTTGCACTTGCTTT 559
> Ahg919727 jgi|Araly1|919727|scaffold_101008.1
Length=549
Score = 612 bits (331), Expect = 1e-174
Identities = 452/511 (88%), Gaps = 5/511 (1%)
Strand=Plus/Plus
Query 28 GAGGAGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGA 87
|||||| ||||||||||||||| || ||||| |||||||||| || |||||||||||||
Sbjct 24 GAGGAGAAAAAATGCCGGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGA 83
Query 88 GACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCG 147
| || |||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 84 GGCCGTTCAGGAAGAAGGGTTATATTCCACTATCGACGTACCTGAGAACCTTCAAGGTCG 143
Query 148 GCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCT 207
|||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 144 GCGACTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCT 203
Query 208 ACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTCA 267
|||| |||||||||||||| ||||||| ||||| || |||||||| |||||||||||||
Sbjct 204 ACCACGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTTGAAGTCA 263
Query 268 ACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGC 327
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 264 ACAAACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGC 323
Query 328 AACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAA-ACAGAACGATGTGCTTAAG 386
| || ||||| |||||||||||||| || || || ||||| | ||||||||| ||| |||
Sbjct 324 AGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGA-AGAACGATGAGCTCAAG 382
Query 387 GCTG-ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAA 445
|||| | || ||||||| ||| ||||| ||||||||||||||||||||||| || || ||
Sbjct 383 GCTGCA-GCCAAAGCCACAGGCGAGACCATCAGCACCAAGAGACAGCCTAAGGGACCCAA 441
Query 446 ACCGGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGT 505
||| || |||||||| ||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 442 ACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGT 501
Query 506 TGTCAACGATCTCAAGGGTGGTTATTGAGTT 536
|||||||||||||||||| || |||| ||||
Sbjct 502 TGTCAACGATCTCAAGGGAGGCTATT-AGTT 531
> Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1
Length=617
Score = 599 bits (324), Expect = 9e-171
Identities = 447/507 (88%), Gaps = 5/507 (1%)
Strand=Plus/Plus
Query 32 AGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACC 91
|||||||||||| ||||| || ||||| |||||||||| || |||||||||||||| ||
Sbjct 25 AGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCC 84
Query 92 ATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGA 151
|||||||||||||||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 85 ATTCAGGAAGAAGGGTTACATTCCACTATCGACTTACCTGAGGACCTTCAAGGTCGGCGA 144
Query 152 TTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCA 211
|||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct 145 TTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCA 204
Query 212 TGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTCAACAA 271
|||||||||||||| ||||||| ||||| || || ||||| |||||||||||||||||
Sbjct 205 CGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAA 264
Query 272 ACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACA 331
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 265 ACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTCCAGCA 324
Query 332 GTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAA-ACAGAACGATGTGCTTAAGGCTG 390
||||| ||||| |||||||| || || || ||||| | ||||||||| ||| |||||||
Sbjct 325 ATCAAGATGTGCGGAGGAGTTCAAGCTGAGGAAGAAGA-AGAACGATGAGCTCAAGGCTG 383
Query 391 -ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCG 449
| || ||||||| ||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 384 CA-GCCAAAGCCAAAGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 442
Query 450 GGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTC 509
|| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 443 GGATTCATGGTTGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTCGTC 502
Query 510 AACGATCTCAAGGGTGGTTATTGAGTT 536
||||||||||| || || |||| ||||
Sbjct 503 AACGATCTCAAAGGAGGCTATT-AGTT 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5