BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57870.3
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1 2316 0.0
Ahg471093 jgi|Araly1|471093|fgenesh2_kg.1__1047__AT1G09840.4 1454 0.0
> Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1
Length=1829
Score = 2316 bits (1254), Expect = 0.0
Identities = 1439/1525 (94%), Gaps = 26/1525 (2%)
Strand=Plus/Plus
Query 192 GAAAAAGAAG--AAGATCATCAAATGCGTGATTTTTACTTTTCCGTTCAAGTGATTGAT- 248
|||||||||| |||||||| |||| ||||| |||| ||| |||||||||||||||||
Sbjct 99 GAAAAAGAAGTTGAGATCATCGAATGTGTGATGTTTAATTTACCGTTCAAGTGATTGATC 158
Query 249 CAAGGGAACATAAGCAGCTAGAGACCACACCACTCAGTTATTTCTATCTCATAGTGCTTG 308
||| |||||||||||| | ||||| || | |||||| ||||| ||| || | | |
Sbjct 159 CAA-GGAACATAAGCAACAAGAGATCAGAGCACTCACTTATTGCTA--TC-T--T-C--- 208
Query 309 TGGATGTTCAAGCTATAAGAATGTGCTCGGTGGTTCTATGAATATAT----AGATTGGTG 364
| | |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 209 T--A----CAAGATATAAGAATGTGCTCGGTGGTTCTATGAATATATAGGAAGACTGGTG 262
Query 365 TTTTGATGGGATGGGACACCAAATTGCTAAGGTTTATGGTGTTATCAATTACTAGTACGT 424
||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 263 GTTTGATGGGATGGGACACCTAATTGCTAAGGATTGTGGTGTTATCAATTACTAGTACGT 322
Query 425 GTTATCTTCCGAACAACCACCACCATGGAATCTCATCTGGGAAATGGAGTAGGCAGTTCG 484
||||||||| |||| | ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 323 GTTATCTTCAGAAC-A--ACCACGATGGAATCTCATCTGGGAAATGGAGTGGGCAGTTCG 379
Query 485 AGATCTGCCAAAAATACAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGCAGAGATATG 544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AGATCTGCCAAAAATATAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGCAGAGATATG 439
Query 545 CTTGAGATGAAGATAAGGGACAAGACAGAGGCTGATGAGGAGAGAGACAGTGAACCAGAT 604
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 440 CTTGAGATGAAGATAAGGGACAAGACAGAGGCTGATGAGGACAGAGACAGTGAACCAGAT 499
Query 605 ATCATTGATGGAGTTGGTGCAGAACCTGGCCATGTGATCACAACTACACTCCCTGGACGA 664
|||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 500 TTCATTGATGGGGTTGGTGCAGAACCTGGTCATGTGATCAGAACTACACTCCGTGGACGA 559
Query 665 AATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTCGGGACTGGTTCA 724
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 560 AATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTTGGAACTGGTTCC 619
Query 725 TTCGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCATCAAAAAA 784
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTTGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCATCAAAAAG 679
Query 785 GTTCTACAAGACAAGCGTTACAAGAACAGAGAATTACAAATTATGCAGATGCTAGACCAT 844
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 680 GTTCTACAAGACAAGCGCTACAAGAACAGGGAATTACAAATTATGCAGATGCTAGACCAT 739
Query 845 CCGAATGTTGTTTGTTTAAAGCATAGCTTCTATTCAAGAACAGAAAATGAAGAGGTTTAT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CCGAATGTTGTTTGTTTAAAGCATAGCTTCTATTCAAGAACAGAAAATGAAGAGGTTTAT 799
Query 905 CTAAATCTTGTCCTTGAGTTTGTTCCCGAGACTGTCAATCGTACTGCCAGAAGCTACAGT 964
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CTAAATCTTGTCCTTGAATTTGTTCCCGAGACTGTCAATCGTACTGCCAGAAGCTACAGT 859
Query 965 AGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACACTTACCAGATTTGCAGG 1024
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 860 AGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACGCTTATCAGATTTGCAGG 919
Query 1025 GGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGTGATATAAAGCCCCAAAAC 1084
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 920 GGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGGGATATTAAGCCCCAAAAC 979
Query 1085 CTGCTAGTGAATCCACACACACATCAGCTGAAAATTTGTGATTTTGGGAGTGCAAAAGTG 1144
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 980 CTGCTAGTGAATCCACACACACATCAGCTAAAAATTTGTGATTTTGGGAGTGCAAAAGTG 1039
Query 1145 TTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCGTGCCCCAGAG 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCGTGCCCCAGAG 1099
Query 1205 CTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTG 1264
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 CTCATTTTTGGAGCCACTGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTG 1159
Query 1265 ATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGTCGATCAACTT 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1160 ATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGTCGACCAACTT 1219
Query 1325 GTTGAAATCATAAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCA 1384
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GTTGAAATCATTAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCA 1279
Query 1385 AACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAGGTATTCCAG 1444
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1280 AACTACACAGAATTTAAATTTCCCCAGATAAAACCTCATCCTTGGCACAAGGTTTTCCAA 1339
Query 1445 AAACGTCTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAAT 1504
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AAACGTTTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAAT 1399
Query 1505 TTGAGATGTACAGCGGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCA 1564
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1400 TTGAGATGCACAGCGGTGGAAGCTTGTATCCATCCGTTCTTTGATGAGCTAAGAGACCCA 1459
Query 1565 AATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCACAAGAA 1624
|| |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1460 AACGCTCGTCTTCCAAACGGCCGGCCACTTCCTCCACTTTTCAATTTTAAACCGCAAGAG 1519
Query 1625 CTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATGCCCGTAAGCAG 1684
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1520 CTCTCTGGTATCCCTCCTGAAACCGTGGACCGGCTTGTCCCAGAACATGCCCGTAAGCAG 1579
Query 1685 AACCACTTCATGGCATTACACTCGT 1709
|||||||||||||||||||||||||
Sbjct 1580 AACCACTTCATGGCATTACACTCGT 1604
Score = 113 bits (61), Expect = 4e-24
Identities = 86/97 (89%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 1708 GTGCTTGCGCATCCCTTG-T-CGT-GAAGTGAGG-ATGCGTAAAATACAACACTACTTTG 1763
|||||||||||||| ||| | || |||||| || ||||||| |||||||||||||||||
Sbjct 1735 GTGCTTGCGCATCCTTTGTTGTGTCGAAGTG-GGAATGCGTACAATACAACACTACTTTG 1793
Query 1764 TTAGATATATGATATAGAGGAACATACTTACATTTGC 1800
|| ||| |||||||||||||||||||||||||||||
Sbjct 1794 CTACATA-ATGATATAGAGGAACATACTTACATTTGC 1829
> Ahg471093 jgi|Araly1|471093|fgenesh2_kg.1__1047__AT1G09840.4
Length=1749
Score = 1454 bits (787), Expect = 0.0
Identities = 1163/1345 (86%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 366 TTTGATGGGATGGGACACCAAATT-GCTAAGGTTTATGGTGTTATCAATTACTAGTACGT 424
||||||||||||||||||| |||| | | || ||||| || |||||| |||||||||||
Sbjct 188 TTTGATGGGATGGGACACC-AATTCACCATGGGTTATGATGCTATCAAATACTAGTACGT 246
Query 425 GTTATCTTCCGAACAACCACCACCATGGAATC-TCAT---CTGGGAAATGGAGTAGGCAG 480
|||||||| ||| | | | ||||| ||| || | |||||||||||||| |||||
Sbjct 247 TTTATCTTCAGAA-TA--AGTATCATGGCATCTTC-TGGACTGGGAAATGGAGTGGGCAG 302
Query 481 TTCGAGATCTGCCAAAAATACAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGC-AGAG 539
|||||||||||||||| | ||||| | ||||||||||||| |||||||||| | ||||
Sbjct 303 TTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTCTAGTTCAGTCGATTGGTTGA-CGAGAG 361
Query 540 ATAT-GCTTGAGATGAAGATAAGGGAC-AAGACAGAGGCTGATGAGGAGAGAGACAGTGA 597
|| | || ||||| || |||||||||| ||| |||| | ||||| |||||||| |||||
Sbjct 362 ATTTGGC-TGAGACGAGGATAAGGGACAAAG-TAGAGACCGATGATGAGAGAGATAGTGA 419
Query 598 ACCAGATATCATTGATGGAGTTGGTGCAGAACCTGGCCATGTGA-TCACAACTACACTCC 656
||||||||| |||||||| | |||||| |||||||| ||||||| || ||| |||||||
Sbjct 420 ACCAGATATTATTGATGGGGCTGGTGCTGAACCTGGTCATGTGATTC-GAACCACACTCC 478
Query 657 CTGGACGAAATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTCGGGA 716
||| |||||||||||||||||||||||||| || |||||| ||||||| || ||||| |
Sbjct 479 GTGGTCGAAATGGTCAATCAAGACAGACAGTTAGCTACATATCAGAACATGTTGTCGGTA 538
Query 717 CTGGTTCATTCGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCA 776
||||||| || || |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 539 CTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAGGGAAACTGGGGAGGTTGTTGCTA 598
Query 777 TCAAAAAAGTTCTACAAGACAAGCGTTACAAGAACAGAGAATTACAAATTATGCAGATGC 836
|||| || ||||||||||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 599 TCAAGAAGGTTCTACAAGACAAGCGGTACAAGAACAGAGAGCTACAAATAATGCAGATGC 658
Query 837 TAGACCATCCGAATGTTGTTTG-TTTAAAGCATAGCTTCTAT-TCAAGAACAGAAAATGA 894
|||||||||| ||||| | ||| |||||||||||| || | | ||||||||||| |||||
Sbjct 659 TAGACCATCCCAATGTCG-TTGCTTTAAAGCATAG-TTTTTTCTCAAGAACAGACAATGA 716
Query 895 AGAGGTTTATCTAAATCTTGTCCTTGAGTTTGTTCCCGAGACTGTCAATCGTACTGCCAG 954
|||||||||| | |||||||||||||| ||||| || ||||| ||||||||| ||| ||
Sbjct 717 AGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGAGACCGTCAATCGTGTTGCAAG 776
Query 955 AAGCTACAGTAGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACACTTACCA 1014
||| || ||||| | |||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 777 AAGTTATAGTAGGACGAACCAGCTGATGCCATTGATATACGTTAAACTCTACACCTATCA 836
Query 1015 GATTTGCAGGGGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGTGATATAAA 1074
||||||||||| |||||||||| | ||||| | || ||||||||||||||||||||| ||
Sbjct 837 GATTTGCAGGGCGCTTGCTTACATCCATAACTCCTTTGGTCTTTGTCACCGTGATATTAA 896
Query 1075 GCCCCAAAACCTGCTAGTGAATCCACACACACATCAGCTGAAAATTTGTGATTTTGGGAG 1134
||| ||||||||||| || || |||||||| |||||||| ||||| |||||||| |||||
Sbjct 897 GCCTCAAAACCTGCTGGTAAACCCACACACGCATCAGCTAAAAATATGTGATTTCGGGAG 956
Query 1135 TGCAAAAGTGTTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCG 1194
|||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 957 AGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTACATCTGCTCAAGATACTATCG 1016
Query 1195 TGCCCCAGAGCTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCAC 1254
||| ||||| || |||||||| |||| || |||||||||||||| || |||||||||||
Sbjct 1017 TGCTCCAGAACTTATTTTTGGTGCCAGTGAATACACAACTGCAATCGATATATGGTCCAC 1076
Query 1255 AGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGT 1314
|||||||||||||| ||||| || ||||||||||||||||||||||| || || |||||
Sbjct 1077 TGGTTGTGTGATGGCCGAACTACTTCTTGGACAGCCTCTGTTTCCTGGTGAGAGCGGAGT 1136
Query 1315 CGATCAACTTGTTGAAATCATAAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATG 1374
|||||||||||||||||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct 1137 TGATCAACTTGTTGAAATCATTAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTG 1196
Query 1375 CATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAA 1434
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1197 CATGAATCCAAACTATACAGAATTTAAGTTTCCCCAGATAAAACCTCATCCATGGCACAA 1256
Query 1435 GGTATTCCAGAAACGTCTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTA 1494
||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1257 GGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCCAGTA 1316
Query 1495 TTCTCCTAATTTGAGATGTACAGCGGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCT 1554
||| |||||||||||||||||||| ||||||||||||| || || || |||||||||||
Sbjct 1317 TTCCCCTAATTTGAGATGTACAGCTTTGGAAGCTTGTATTCATCCGTTATTTGATGAGCT 1376
Query 1555 AAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAA 1614
||| |||||||| ||||||| || || ||||| ||||||||||| || ||||| |||||
Sbjct 1377 AAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAA 1436
Query 1615 ACCACAAGAACTCTCTGGTATCCCTCCTGAAA-CTGTGGACCGACTTGTCCCAGAACATG 1673
||| ||||| || ||||| ||||||||||||| | ||| || | ||||| ||||| || |
Sbjct 1437 ACCGCAAGAGCTATCTGGCATCCCTCCTGAAATC-GTGAACAGGCTTGTACCAGAGCAAG 1495
Query 1674 CCCGTAAGCAGAACCACTTCATGGC 1698
||||||||||||||| |||||||||
Sbjct 1496 CCCGTAAGCAGAACCTCTTCATGGC 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5