BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57943.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2 1664 0.0
Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1 1336 0.0
Ahg925250 jgi|Araly1|925250|scaffold_200811.1 861 0.0
Ahg925251 jgi|Araly1|925251|scaffold_200812.1 259 3e-68
> Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2
Length=1180
Score = 1664 bits (901), Expect = 0.0
Identities = 1069/1149 (93%), Gaps = 16/1149 (1%)
Strand=Plus/Plus
Query 56 TTCAGAATCCAGAACCAG-ACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAA 114
|||||||||||||||| | |||||| |||||||||||||||||| ||| |||||||||||
Sbjct 41 TTCAGAATCCAGAACC-GTACCAAAGCTTGAGTCCAAGAAGATCATTGAAGCTAAAACAA 99
Query 115 AGAAAATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTC 174
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 100 AGAAAATGGTGGATCTCTGTTTCTTTATGTATTTTCTTAGTCTTGCTCGGTGATTCTCTC 159
Query 175 GTCATGCTTCTCTTGAACTTCTTCTATGTCCAAATGAAGCAAGACCGTCGA-GAAGA-GT 232
|||||||||||||||||||||||||| || |||||| |||||||| || | ||| | |
Sbjct 160 GTCATGCTTCTCTTGAACTTCTTCTACGTTCAAATGGAGCAAGACTTTC-ATGAA-ATTT 217
Query 233 ATGACCAAGATCTACAATATAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGT 292
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATGACCAAGATCTGCAATACAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGT 277
Query 293 TTCCTATTCTCATCCCTCTCTTTTTCATTTTCCCTAAACCAAAACAACACCTTGAAACCA 352
||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 278 TTCCTATCCTCATTCCTCTCTTCTTCATTTTCCCTAAACCAAAACAAAACCTTGAAACCA 337
Query 353 ACAATACTAGTTTCCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTG 412
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ACAATACTAGATTCCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTG 397
Query 413 TTGCTGCTCACAGCAAATTGTTCGCACTCGGGAAATTAGTCTCAAACTATGGCATCTTC- 471
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 398 TTGCTGCTCACAGCAAATTGTTTGCACTCGGCAAATTAGTCTCAAACTATGGCATCTTCA 457
Query 472 TCATTGATTTCCACAACACAGTTGATATTTACCGCTGTTTTAACAGCCATCATTAACCGT 531
| ||||||||| |||| || ||||||||||||||| |||||||||| |||||||||||
Sbjct 458 TG-TTGATTTCCGCAACCCAATTGATATTTACCGCTATTTTAACAGCTATCATTAACCGC 516
Query 532 TTCAAGTTTACTAGATGGATCATCATATCGATATTACTCACTATTGTGATTTACGTTCTC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TTCAAGTTTACTAGATGGATCATCATATCGATATTACTCACTATTGTGATTTACGTTCTC 576
Query 592 GGTACT-CCTGACTTTGGAGGACAGCCTCATGACGGCGAAGAAT-TCGGATACAACATCC 649
||| | |||||||||||||||||||||||||| || ||||||| | |||||||||||||
Sbjct 577 AGTA-TACCTGACTTTGGAGGACAGCCTCATGAGGGAGAAGAATAT-GGATACAACATCC 634
Query 650 AAGCTTGGTTAGCTTTCTCTGCTACAATTGCTTTCTCATTATCTCTTTGCTTAATCCAAC 709
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 635 AAGCTTGGTTAGCTTTCTCTGCTACGATTGCTTTCTCATTATCTCTCTGCTTAATCCAAC 694
Query 710 TCGGGTTCGAGAAACTCCAAGTGAAGACCAAGAGATATGGTAACGAGAAAGTGTTTAGAA 769
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 695 TCGGGTTCGAGAAACTCCTGGTGAAGACAAAGAGATATGGTAACAAGAAAGTGTTTAGAA 754
Query 770 TGGTCTTAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCGGTTGTTTGTCTCGTGGGCT 829
|||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||| |
Sbjct 755 TGGTCTTAGAGATGCAAATATGTGTCTCTTTTGTCGCCTCGATTATTTGTCTTGTGGGTT 814
Query 830 TGTTTGCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGCAAGAGGTTTAAGAAAGGGG 889
||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 815 TGTTTGCAAGTGGTGAGTATAAGGAACTGAAAGGTGATAGCAAGAGGTTTAAGAAAGGAG 874
Query 890 AAACGTATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCG 949
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 AAGCGTATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCG 934
Query 950 GGATGATAGGTTTGGTGCATTATGTTTCGGGTCTTTTTGGTGATGTTGTTCATATGTGTG 1009
|| | ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 935 GGCTTATAGGTTTGGTGCTTTATGTTTCGGGTCTTTTTGGTGATATTGTTCATATGTGCG 994
Query 1010 CTTCACCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTA 1069
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTA 1054
Query 1070 GTTGGCCTAGAATTGGTGCTTTGAT-AGGAACAGTTTTGGCGTTAGGATCTTACTTCTAC 1128
||||| |||||||||||||||| || ||||||| |||||| || |||||||||||||||
Sbjct 1055 GTTGGACTAGAATTGGTGCTTT-ATTAGGAACAACTTTGGCTTTGGGATCTTACTTCTAC 1113
Query 1129 ACTCTGCACAAGAGAAACAAGAAGAAGATGGCGGAACTTAACCAAAGTGAGAACAATGTT 1188
||||| |||||||||||||||||||||||| | |||||||| ||||||| | |||||||
Sbjct 1114 ACTCTACACAAGAGAAACAAGAAGAAGATGTCCGAACTTAATTAAAGTGA-A-CAATGTT 1171
Query 1189 GAAGTTTAG 1197
|||||||||
Sbjct 1172 GAAGTTTAG 1180
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATGTCCAAAGCTTCCAAACAGACAACAAGACAT 39
|||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAGATGTCCAAAGCTTCCAAACAGACAGCAAGACAT 39
> Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1
Length=1295
Score = 1336 bits (723), Expect = 0.0
Identities = 1049/1203 (87%), Gaps = 36/1203 (3%)
Strand=Plus/Plus
Query 1 ATGGAGATGTCCA-AAGCTTCCAAACAGACAACAAGACATGAAGAATCAGAACACGTTCA 59
||||||||| || ||||||| ||||||||||| | ||| ||||||| || | ||
Sbjct 43 ATGGAGATG-ACAGAAGCTTCAAAACAGACAAC-A-ACA-GAAGAAT-----CA-G--CA 90
Query 60 GAATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAAAGAAA 119
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 91 -AATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCATTGGAGCTAAATCAAAGAAA 149
Query 120 ATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTCGTCAT 179
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 150 ATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTGCTCGGAGATTCTCTAGTCAT 209
Query 180 GCTTCTCTTGAACTTCTTCTATG-TCCAAATGAAGCAAGACCGTCGAGAAGAGTA-TGAC 237
||||||||||||||||||||||| | | || || | | | ||||||||| | |||
Sbjct 210 GCTTCTCTTGAACTTCTTCTATGAT-C-AA--AA-C-A-A---TCGAGAAGA-CAGTGAT 258
Query 238 CAAGATCTACAATATAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGTTTCCT 297
|||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 259 CAAGATCTACAATACCAAGGAACATGGTTGCAAGCTCTGGTCCAAAACGCTGCGTTTCC- 317
Query 298 A-TTCTCATCCCTCTCTTTTTCATTTTCCCTAAACCAAAACAACACCTTGAAACCAACAA 356
| | ||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 318 ACTCCTCATCCCTCTGTTTTTCATTTTCCCTTCACCAAAACAAAACCAAGAAACCAACAA 377
Query 357 TACTAGTTTCCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTGTTGC 416
||| |||||||||| || |||||| |||| |||||| | ||||||||||||||||||||
Sbjct 378 CACTCGTTTCCTCTCTTTTCGTCTCCTCTTACTTTACATCTCTCTTGGTGTTCTTGTTGC 437
Query 417 TGCTCACAGCAAATTGTTCGCACTCGGGAAATTAGTCT-CAAACTATGGCATCTTCTCAT 475
|||||||||||||||||| ||||||||||||||| | | ||||||||||| ||||| |
Sbjct 438 TGCTCACAGCAAATTGTTTGCACTCGGGAAATTA-TATGCAAACTATGGCGTCTTCACGC 496
Query 476 TGATTTCCACAACACAGTTGATATTTACCGCTGTTTTAACAGCCATCATTAACCGTTTCA 535
| |||||| | || |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 497 TCATTTCCGCGACCCAGTTGATATTTACCGCTATTTTCACAGCCATCATTAACCGTTTCA 556
Query 536 AGTTTACTAGATGGATCATCATATCGATATTACTCACTATTGTGATTTACGTTCTCGGTA 595
|||| || |||||||| ||| |||||||| | ||||| ||| ||||||| ||| | ||||
Sbjct 557 AGTTCACCAGATGGATTATCTTATCGATAATCCTCACCATTTTGATTTATGTTTTTGGTA 616
Query 596 CTCCTGACTTTGGAGGACAGCCTCATGACGGCGAAGAATTCGGATACAACATCCAAGCTT 655
|||||| ||||||||| ||||| |||| |||||||||| ||||||||||||||||
Sbjct 617 GTCCTGAATTTGGAGGAGAGCCTGATGAAAACGAAGAATTC---TACAACATCCAAGCTT 673
Query 656 GGTTAGCTTTCTCTGCTACAATTGCTTTCTCATTATCTCTTTGCTTAATCCAACTCGGGT 715
||||| ||||| ||||| || |||||||| |||||||||| || ||| |||||||||| |
Sbjct 674 GGTTAACTTTCGCTGCTTCAGTTGCTTTCGCATTATCTCTCTGTTTAGTCCAACTCGGTT 733
Query 716 TCGAGAAACTCCAAGTGAAGACCAAGAGATATGGTAACGAGAAAGTGTTTAGAATGGTCT 775
|||||||| | |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 734 TCGAGAAAGTGTTGGTGAAGACAAAGAGATATGGTAATAAGAAAGTGTTTAGAATGGTCT 793
Query 776 TAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCGGTTGTTTGTCTCGTGGGCT-TGTTT 834
||||||||||||| |||||| ||||||||||| ||||||||||||||||||| | |||||
Sbjct 794 TAGAGATGCAAATCTGTGTCTCTTTTGTCGCCACGGTTGTTTGTCTCGTGGG-TATGTTT 852
Query 835 GCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGCAAGAGGTTTAAGAAAGGGGAAACG 894
||||||| |||| ||||||||||| ||||||||||| | | ||||||||||| |||| |
Sbjct 853 GCGAGTGGCGAGAATAAGGAACTGCAAGGCGATAGCCACAACTTTAAGAAAGGAGAAATG 912
Query 895 TATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCGGGATG 954
||||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 913 TATTACGTTATGAGTTTGATCGGGTTGGCATTGTCCTGGCAGGTTTGGGCGGTCGGGCTG 972
Query 955 ATAGGTTTGGTGCATTATGTTTCGGGTCTTTTTGGTGATGTTGTTCATATGTGTGCTTCA 1014
||||||||||||| ||||||||||||| | ||||| ||||| |||||||||||| ||||
Sbjct 973 ATAGGTTTGGTGCTTTATGTTTCGGGTGTGTTTGGCGATGTGGTTCATATGTGTACTTCC 1032
Query 1015 CCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTAGTTGG 1074
||| |||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 1033 CCACTTGTGGCTTTATTTGTTGTGTTGGCATTTGATTTCATGGATGATGAGTTTAGTTGG 1092
Query 1075 CCTAGAATTGGTGCTTTGATAGGAACAGTTTTGGCGTTAGGATCTTACTTCTACACTCTG 1134
|||||||||||| ||||||||| |||| |||||| ||||||||||||||||| || |||
Sbjct 1093 CCTAGAATTGGTACTTTGATAGCAACACCTTTGGCTTTAGGATCTTACTTCTATACACTG 1152
Query 1135 CACAAGAGAAACAAGAAGAAGATGGCGGAACTTAACCAAAGTGAGAACAATGTTGAAGTT 1194
|| ||||||||||| |||||||||| ||||||| |||||| ||||||||| ||||||||
Sbjct 1153 CATAAGAGAAACAAAAAGAAGATGGTGGAACTTTACCAAACAGAGAACAATATTGAAGTT 1212
Query 1195 TAG 1197
|||
Sbjct 1213 TAG 1215
> Ahg925250 jgi|Araly1|925250|scaffold_200811.1
Length=918
Score = 861 bits (466), Expect = 0.0
Identities = 659/752 (88%), Gaps = 14/752 (2%)
Strand=Plus/Plus
Query 453 CTCAAACTATGGCATCTTCTCATTGATTTCCACAACACAGTTGATATTTACCGCT-GTTT 511
||||||||||||| ||||| | |||||||| | || |||||||| ||||||| | ||||
Sbjct 152 CTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCG-TGGTTT 210
Query 512 TAACAGCCATCATTAACCGTTTCAAGTTTACTAGATGGATCATCATATCGATATTACTCA 571
| ||||||| || ||||||||||||||||| |||||||| |||||||||||| | ||||
Sbjct 211 TCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAATCCTCA 270
Query 572 CTATTGTGATTTACGTTCTCGGTACTCCTGACTTTGGAGGACAGCCTCATGACGGCGAAG 631
| ||| |||| || ||| |||||| |||||| || | |||| ||||| |||| |||||
Sbjct 271 CCATTTTGATATATGTTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAAACGAAG 330
Query 632 AATTCGGATACAACATCCAAGCTTGGTTAGCTTTCT-CTGCTACAATTGCTTTCTCATTA 690
||||| ||| ||||||||||||||||| |||| | ||||| || |||| ||| | |||
Sbjct 331 AATTC---TACGACATCCAAGCTTGGTTAACTTT-TGCTGCTTCAGTTGCCTTCCCTTTA 386
Query 691 TCTCTTTGCTTAATCCAACTCGGGTTCGAGAAACTCCAAGTGAAGACCAAGAGATATGGT 750
|||| || |||| |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 387 TCTCCCTGTTTAAGCCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATATGGT 446
Query 751 AACGAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCG 810
||| |||||||||||||||||||||| ||| | ||||| |||||| ||||||| ||||||
Sbjct 447 AACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCCTCG 506
Query 811 GTTGTTTGTCTCGTGGGCTTGTTTGCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGC 870
||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 507 GTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGATAGC 566
Query 871 AAGAGGTTTAAGAAAGGGGAAACGTATTACGTTCTGAGTTTGGT-CGGGTTGGCTTTGTC 929
||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||
Sbjct 567 AAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTTAGTTTGGTTCGG-TTGGCTTTGTC 625
Query 930 GTGGCAGGTTTGGGCGGTCGGGATGATAGGTTTGGTGCAT-TATGTTTCGGGTCTTTTTG 988
||||||||||||| |||||||| ||||||||||||||| | |||||||| ||| | ||||
Sbjct 626 GTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGC-TCTATGTTTCCGGTGTGTTTG 684
Query 989 GTGATGTTGTTCATATGTGTGCTTCACCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTG 1048
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct 685 GTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCGTTTG 744
Query 1049 ATTTTATGGATGATGTGTTTAGTTGGCCTAGAATTGGTGCTTTGATAGGAACAGTTTTGG 1108
||||||||||||||| |||||||||||| || |||||| ||||||||| |||||||||||
Sbjct 745 ATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTTTTGG 804
Query 1109 CGTTAGGATCTTACTTCTACACTCTGCACAAGAGAAACAAGAAGAAGATGGCGGAACTTA 1168
| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 805 CTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAACTTA 864
Query 1169 ACCAAAGTGAGAAC-A-A-TGTTGAAGTTTAG 1197
||||||| |||||| | | | |||||||||||
Sbjct 865 ACCAAAGAGAGAACTATAATATTGAAGTTTAG 896
> Ahg925251 jgi|Araly1|925251|scaffold_200812.1
Length=236
Score = 259 bits (140), Expect = 3e-68
Identities = 191/214 (89%), Gaps = 9/214 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATG-TCCAAAGCTTCCAAACAGACAACAAGACATGAAGAATCAGAACACGTTCA 59
||||||||| || ||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct 22 ATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAATCAGAACATGTTCA 80
Query 60 GAATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAAA-GAA 118
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |||
Sbjct 81 GAATCCAGAACCAGACCAAATCTTCAGTCCAAGAAGATCGTTGGAGCTCAATCAAAAGAA 140
Query 119 AATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTCGTCA 178
| ||||||||||||||| | ||||||||||||||||| | || ||||||||||||||||
Sbjct 141 A-TGGTGGATCTCTGTTGCGCTATGTCTTTTCTTAGTCCTGCTTGGAGATTCTCTCGTCA 199
Query 179 TGC--T--T-CTCTTGAACTTCTTCTATGTCCAA 207
||| | | |||||||||||||||||||| |||
Sbjct 200 TGCGATGCTTCTCTTGAACTTCTTCTATGTTCAA 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5