BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57943.1 Length=1197 Score E Sequences producing significant alignments: (Bits) Value Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2 1664 0.0 Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1 1336 0.0 Ahg925250 jgi|Araly1|925250|scaffold_200811.1 861 0.0 Ahg925251 jgi|Araly1|925251|scaffold_200812.1 259 3e-68 > Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2 Length=1180 Score = 1664 bits (901), Expect = 0.0 Identities = 1069/1149 (93%), Gaps = 16/1149 (1%) Strand=Plus/Plus Query 56 TTCAGAATCCAGAACCAG-ACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAA 114 |||||||||||||||| | |||||| |||||||||||||||||| ||| ||||||||||| Sbjct 41 TTCAGAATCCAGAACC-GTACCAAAGCTTGAGTCCAAGAAGATCATTGAAGCTAAAACAA 99 Query 115 AGAAAATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTC 174 |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| Sbjct 100 AGAAAATGGTGGATCTCTGTTTCTTTATGTATTTTCTTAGTCTTGCTCGGTGATTCTCTC 159 Query 175 GTCATGCTTCTCTTGAACTTCTTCTATGTCCAAATGAAGCAAGACCGTCGA-GAAGA-GT 232 |||||||||||||||||||||||||| || |||||| |||||||| || | ||| | | Sbjct 160 GTCATGCTTCTCTTGAACTTCTTCTACGTTCAAATGGAGCAAGACTTTC-ATGAA-ATTT 217 Query 233 ATGACCAAGATCTACAATATAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGT 292 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 218 ATGACCAAGATCTGCAATACAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGT 277 Query 293 TTCCTATTCTCATCCCTCTCTTTTTCATTTTCCCTAAACCAAAACAACACCTTGAAACCA 352 ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 278 TTCCTATCCTCATTCCTCTCTTCTTCATTTTCCCTAAACCAAAACAAAACCTTGAAACCA 337 Query 353 ACAATACTAGTTTCCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTG 412 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 ACAATACTAGATTCCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTG 397 Query 413 TTGCTGCTCACAGCAAATTGTTCGCACTCGGGAAATTAGTCTCAAACTATGGCATCTTC- 471 |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 398 TTGCTGCTCACAGCAAATTGTTTGCACTCGGCAAATTAGTCTCAAACTATGGCATCTTCA 457 Query 472 TCATTGATTTCCACAACACAGTTGATATTTACCGCTGTTTTAACAGCCATCATTAACCGT 531 | ||||||||| |||| || ||||||||||||||| |||||||||| ||||||||||| Sbjct 458 TG-TTGATTTCCGCAACCCAATTGATATTTACCGCTATTTTAACAGCTATCATTAACCGC 516 Query 532 TTCAAGTTTACTAGATGGATCATCATATCGATATTACTCACTATTGTGATTTACGTTCTC 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 TTCAAGTTTACTAGATGGATCATCATATCGATATTACTCACTATTGTGATTTACGTTCTC 576 Query 592 GGTACT-CCTGACTTTGGAGGACAGCCTCATGACGGCGAAGAAT-TCGGATACAACATCC 649 ||| | |||||||||||||||||||||||||| || ||||||| | ||||||||||||| Sbjct 577 AGTA-TACCTGACTTTGGAGGACAGCCTCATGAGGGAGAAGAATAT-GGATACAACATCC 634 Query 650 AAGCTTGGTTAGCTTTCTCTGCTACAATTGCTTTCTCATTATCTCTTTGCTTAATCCAAC 709 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 635 AAGCTTGGTTAGCTTTCTCTGCTACGATTGCTTTCTCATTATCTCTCTGCTTAATCCAAC 694 Query 710 TCGGGTTCGAGAAACTCCAAGTGAAGACCAAGAGATATGGTAACGAGAAAGTGTTTAGAA 769 |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 695 TCGGGTTCGAGAAACTCCTGGTGAAGACAAAGAGATATGGTAACAAGAAAGTGTTTAGAA 754 Query 770 TGGTCTTAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCGGTTGTTTGTCTCGTGGGCT 829 |||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||| | Sbjct 755 TGGTCTTAGAGATGCAAATATGTGTCTCTTTTGTCGCCTCGATTATTTGTCTTGTGGGTT 814 Query 830 TGTTTGCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGCAAGAGGTTTAAGAAAGGGG 889 ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 815 TGTTTGCAAGTGGTGAGTATAAGGAACTGAAAGGTGATAGCAAGAGGTTTAAGAAAGGAG 874 Query 890 AAACGTATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCG 949 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 AAGCGTATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCG 934 Query 950 GGATGATAGGTTTGGTGCATTATGTTTCGGGTCTTTTTGGTGATGTTGTTCATATGTGTG 1009 || | ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | Sbjct 935 GGCTTATAGGTTTGGTGCTTTATGTTTCGGGTCTTTTTGGTGATATTGTTCATATGTGCG 994 Query 1010 CTTCACCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTA 1069 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 CTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTA 1054 Query 1070 GTTGGCCTAGAATTGGTGCTTTGAT-AGGAACAGTTTTGGCGTTAGGATCTTACTTCTAC 1128 ||||| |||||||||||||||| || ||||||| |||||| || ||||||||||||||| Sbjct 1055 GTTGGACTAGAATTGGTGCTTT-ATTAGGAACAACTTTGGCTTTGGGATCTTACTTCTAC 1113 Query 1129 ACTCTGCACAAGAGAAACAAGAAGAAGATGGCGGAACTTAACCAAAGTGAGAACAATGTT 1188 ||||| |||||||||||||||||||||||| | |||||||| ||||||| | ||||||| Sbjct 1114 ACTCTACACAAGAGAAACAAGAAGAAGATGTCCGAACTTAATTAAAGTGA-A-CAATGTT 1171 Query 1189 GAAGTTTAG 1197 ||||||||| Sbjct 1172 GAAGTTTAG 1180 Score = 67.6 bits (36), Expect = 2e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1 ATGGAGATGTCCAAAGCTTCCAAACAGACAACAAGACAT 39 |||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGGAGATGTCCAAAGCTTCCAAACAGACAGCAAGACAT 39 > Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1 Length=1295 Score = 1336 bits (723), Expect = 0.0 Identities = 1049/1203 (87%), Gaps = 36/1203 (3%) Strand=Plus/Plus Query 1 ATGGAGATGTCCA-AAGCTTCCAAACAGACAACAAGACATGAAGAATCAGAACACGTTCA 59 ||||||||| || ||||||| ||||||||||| | ||| ||||||| || | || Sbjct 43 ATGGAGATG-ACAGAAGCTTCAAAACAGACAAC-A-ACA-GAAGAAT-----CA-G--CA 90 Query 60 GAATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAAAGAAA 119 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 91 -AATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCATTGGAGCTAAATCAAAGAAA 149 Query 120 ATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTCGTCAT 179 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 150 ATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTGCTCGGAGATTCTCTAGTCAT 209 Query 180 GCTTCTCTTGAACTTCTTCTATG-TCCAAATGAAGCAAGACCGTCGAGAAGAGTA-TGAC 237 ||||||||||||||||||||||| | | || || | | | ||||||||| | ||| Sbjct 210 GCTTCTCTTGAACTTCTTCTATGAT-C-AA--AA-C-A-A---TCGAGAAGA-CAGTGAT 258 Query 238 CAAGATCTACAATATAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGTTTCCT 297 |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 259 CAAGATCTACAATACCAAGGAACATGGTTGCAAGCTCTGGTCCAAAACGCTGCGTTTCC- 317 Query 298 A-TTCTCATCCCTCTCTTTTTCATTTTCCCTAAACCAAAACAACACCTTGAAACCAACAA 356 | | ||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||| Sbjct 318 ACTCCTCATCCCTCTGTTTTTCATTTTCCCTTCACCAAAACAAAACCAAGAAACCAACAA 377 Query 357 TACTAGTTTCCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTGTTGC 416 ||| |||||||||| || |||||| |||| |||||| | |||||||||||||||||||| Sbjct 378 CACTCGTTTCCTCTCTTTTCGTCTCCTCTTACTTTACATCTCTCTTGGTGTTCTTGTTGC 437 Query 417 TGCTCACAGCAAATTGTTCGCACTCGGGAAATTAGTCT-CAAACTATGGCATCTTCTCAT 475 |||||||||||||||||| ||||||||||||||| | | ||||||||||| ||||| | Sbjct 438 TGCTCACAGCAAATTGTTTGCACTCGGGAAATTA-TATGCAAACTATGGCGTCTTCACGC 496 Query 476 TGATTTCCACAACACAGTTGATATTTACCGCTGTTTTAACAGCCATCATTAACCGTTTCA 535 | |||||| | || |||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 497 TCATTTCCGCGACCCAGTTGATATTTACCGCTATTTTCACAGCCATCATTAACCGTTTCA 556 Query 536 AGTTTACTAGATGGATCATCATATCGATATTACTCACTATTGTGATTTACGTTCTCGGTA 595 |||| || |||||||| ||| |||||||| | ||||| ||| ||||||| ||| | |||| Sbjct 557 AGTTCACCAGATGGATTATCTTATCGATAATCCTCACCATTTTGATTTATGTTTTTGGTA 616 Query 596 CTCCTGACTTTGGAGGACAGCCTCATGACGGCGAAGAATTCGGATACAACATCCAAGCTT 655 |||||| ||||||||| ||||| |||| |||||||||| |||||||||||||||| Sbjct 617 GTCCTGAATTTGGAGGAGAGCCTGATGAAAACGAAGAATTC---TACAACATCCAAGCTT 673 Query 656 GGTTAGCTTTCTCTGCTACAATTGCTTTCTCATTATCTCTTTGCTTAATCCAACTCGGGT 715 ||||| ||||| ||||| || |||||||| |||||||||| || ||| |||||||||| | Sbjct 674 GGTTAACTTTCGCTGCTTCAGTTGCTTTCGCATTATCTCTCTGTTTAGTCCAACTCGGTT 733 Query 716 TCGAGAAACTCCAAGTGAAGACCAAGAGATATGGTAACGAGAAAGTGTTTAGAATGGTCT 775 |||||||| | |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 734 TCGAGAAAGTGTTGGTGAAGACAAAGAGATATGGTAATAAGAAAGTGTTTAGAATGGTCT 793 Query 776 TAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCGGTTGTTTGTCTCGTGGGCT-TGTTT 834 ||||||||||||| |||||| ||||||||||| ||||||||||||||||||| | ||||| Sbjct 794 TAGAGATGCAAATCTGTGTCTCTTTTGTCGCCACGGTTGTTTGTCTCGTGGG-TATGTTT 852 Query 835 GCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGCAAGAGGTTTAAGAAAGGGGAAACG 894 ||||||| |||| ||||||||||| ||||||||||| | | ||||||||||| |||| | Sbjct 853 GCGAGTGGCGAGAATAAGGAACTGCAAGGCGATAGCCACAACTTTAAGAAAGGAGAAATG 912 Query 895 TATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCGGGATG 954 ||||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||| || Sbjct 913 TATTACGTTATGAGTTTGATCGGGTTGGCATTGTCCTGGCAGGTTTGGGCGGTCGGGCTG 972 Query 955 ATAGGTTTGGTGCATTATGTTTCGGGTCTTTTTGGTGATGTTGTTCATATGTGTGCTTCA 1014 ||||||||||||| ||||||||||||| | ||||| ||||| |||||||||||| |||| Sbjct 973 ATAGGTTTGGTGCTTTATGTTTCGGGTGTGTTTGGCGATGTGGTTCATATGTGTACTTCC 1032 Query 1015 CCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTAGTTGG 1074 ||| |||||||||| |||||||| |||||||||||||| |||||||||| |||||||||| Sbjct 1033 CCACTTGTGGCTTTATTTGTTGTGTTGGCATTTGATTTCATGGATGATGAGTTTAGTTGG 1092 Query 1075 CCTAGAATTGGTGCTTTGATAGGAACAGTTTTGGCGTTAGGATCTTACTTCTACACTCTG 1134 |||||||||||| ||||||||| |||| |||||| ||||||||||||||||| || ||| Sbjct 1093 CCTAGAATTGGTACTTTGATAGCAACACCTTTGGCTTTAGGATCTTACTTCTATACACTG 1152 Query 1135 CACAAGAGAAACAAGAAGAAGATGGCGGAACTTAACCAAAGTGAGAACAATGTTGAAGTT 1194 || ||||||||||| |||||||||| ||||||| |||||| ||||||||| |||||||| Sbjct 1153 CATAAGAGAAACAAAAAGAAGATGGTGGAACTTTACCAAACAGAGAACAATATTGAAGTT 1212 Query 1195 TAG 1197 ||| Sbjct 1213 TAG 1215 > Ahg925250 jgi|Araly1|925250|scaffold_200811.1 Length=918 Score = 861 bits (466), Expect = 0.0 Identities = 659/752 (88%), Gaps = 14/752 (2%) Strand=Plus/Plus Query 453 CTCAAACTATGGCATCTTCTCATTGATTTCCACAACACAGTTGATATTTACCGCT-GTTT 511 ||||||||||||| ||||| | |||||||| | || |||||||| ||||||| | |||| Sbjct 152 CTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCG-TGGTTT 210 Query 512 TAACAGCCATCATTAACCGTTTCAAGTTTACTAGATGGATCATCATATCGATATTACTCA 571 | ||||||| || ||||||||||||||||| |||||||| |||||||||||| | |||| Sbjct 211 TCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAATCCTCA 270 Query 572 CTATTGTGATTTACGTTCTCGGTACTCCTGACTTTGGAGGACAGCCTCATGACGGCGAAG 631 | ||| |||| || ||| |||||| |||||| || | |||| ||||| |||| ||||| Sbjct 271 CCATTTTGATATATGTTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAAACGAAG 330 Query 632 AATTCGGATACAACATCCAAGCTTGGTTAGCTTTCT-CTGCTACAATTGCTTTCTCATTA 690 ||||| ||| ||||||||||||||||| |||| | ||||| || |||| ||| | ||| Sbjct 331 AATTC---TACGACATCCAAGCTTGGTTAACTTT-TGCTGCTTCAGTTGCCTTCCCTTTA 386 Query 691 TCTCTTTGCTTAATCCAACTCGGGTTCGAGAAACTCCAAGTGAAGACCAAGAGATATGGT 750 |||| || |||| |||||| |||||||||||||| |||||||| |||||||||||| Sbjct 387 TCTCCCTGTTTAAGCCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATATGGT 446 Query 751 AACGAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCG 810 ||| |||||||||||||||||||||| ||| | ||||| |||||| ||||||| |||||| Sbjct 447 AACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCCTCG 506 Query 811 GTTGTTTGTCTCGTGGGCTTGTTTGCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGC 870 ||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||||| Sbjct 507 GTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGATAGC 566 Query 871 AAGAGGTTTAAGAAAGGGGAAACGTATTACGTTCTGAGTTTGGT-CGGGTTGGCTTTGTC 929 ||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||| Sbjct 567 AAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTTAGTTTGGTTCGG-TTGGCTTTGTC 625 Query 930 GTGGCAGGTTTGGGCGGTCGGGATGATAGGTTTGGTGCAT-TATGTTTCGGGTCTTTTTG 988 ||||||||||||| |||||||| ||||||||||||||| | |||||||| ||| | |||| Sbjct 626 GTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGC-TCTATGTTTCCGGTGTGTTTG 684 Query 989 GTGATGTTGTTCATATGTGTGCTTCACCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTG 1048 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| Sbjct 685 GTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCGTTTG 744 Query 1049 ATTTTATGGATGATGTGTTTAGTTGGCCTAGAATTGGTGCTTTGATAGGAACAGTTTTGG 1108 ||||||||||||||| |||||||||||| || |||||| ||||||||| ||||||||||| Sbjct 745 ATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTTTTGG 804 Query 1109 CGTTAGGATCTTACTTCTACACTCTGCACAAGAGAAACAAGAAGAAGATGGCGGAACTTA 1168 | ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| Sbjct 805 CTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAACTTA 864 Query 1169 ACCAAAGTGAGAAC-A-A-TGTTGAAGTTTAG 1197 ||||||| |||||| | | | ||||||||||| Sbjct 865 ACCAAAGAGAGAACTATAATATTGAAGTTTAG 896 > Ahg925251 jgi|Araly1|925251|scaffold_200812.1 Length=236 Score = 259 bits (140), Expect = 3e-68 Identities = 191/214 (89%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 1 ATGGAGATG-TCCAAAGCTTCCAAACAGACAACAAGACATGAAGAATCAGAACACGTTCA 59 ||||||||| || ||||||| ||||||||||||| |||||||||||||||||| ||||| Sbjct 22 ATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAATCAGAACATGTTCA 80 Query 60 GAATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAAA-GAA 118 |||||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct 81 GAATCCAGAACCAGACCAAATCTTCAGTCCAAGAAGATCGTTGGAGCTCAATCAAAAGAA 140 Query 119 AATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTCGTCA 178 | ||||||||||||||| | ||||||||||||||||| | || |||||||||||||||| Sbjct 141 A-TGGTGGATCTCTGTTGCGCTATGTCTTTTCTTAGTCCTGCTTGGAGATTCTCTCGTCA 199 Query 179 TGC--T--T-CTCTTGAACTTCTTCTATGTCCAA 207 ||| | | |||||||||||||||||||| ||| Sbjct 200 TGCGATGCTTCTCTTGAACTTCTTCTATGTTCAA 233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44680058724 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5