BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57980.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1 1382 0.0
Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2 1181 0.0
Ahg925250 jgi|Araly1|925250|scaffold_200811.1 883 0.0
Ahg925251 jgi|Araly1|925251|scaffold_200812.1 268 6e-71
> Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1
Length=1295
Score = 1382 bits (748), Expect = 0.0
Identities = 1088/1250 (87%), Gaps = 32/1250 (3%)
Strand=Plus/Plus
Query 65 AGAAAACTCATGGAGATGACCGAAGCTTCCAAACATACAACAACACATGAAGAATCAGAA 124
|||||||||||||||||||| |||||||| ||||| ||||| | ||| |||||||
Sbjct 34 AGAAAACTCATGGAGATGACAGAAGCTTCAAAACAGACAAC-A-ACA-GAAGAAT----- 85
Query 125 CATGTTCAGAATCCTGAACCAGACCAAGTCTTGAG-CCAAAG-ACAACTGTTGCAGCTAA 182
|| | || ||||| |||||||||||| ||||||| || ||| | | | ||| ||||||
Sbjct 86 CA-G--CA-AATCCAGAACCAGACCAAATCTTGAGTCC-AAGAAGATC-ATTGGAGCTAA 139
Query 183 ATCAAAAG-AAATGGTGGATCTCTG-TTCTAATATGTCTTTTCTTAGTCCTGCTTGGAGA 240
||| |||| |||||||||||||||| |||| ||||||||||||||||| |||| |||||
Sbjct 140 ATC-AAAGAAAATGGTGGATCTCTGTTTCT-TTATGTCTTTTCTTAGTCTTGCTCGGAGA 197
Query 241 TTCTCTTGTCATACTTCTCTTGAACTTCTTCTATGTTCAAGACCGTCGAGAAGATAATAA 300
|||||| ||||| |||||||||||||||||||||| |||| || ||||||||| | | |
Sbjct 198 TTCTCTAGTCATGCTTCTCTTGAACTTCTTCTATGATCAAAACAATCGAGAAGACAGTGA 257
Query 301 CCAAGATCTACAATACAAAGGAACATGGATGCAAGCTCTGATCCAAAACGCTGCTTTTCC 360
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 258 TCAAGATCTACAATACCAAGGAACATGGTTGCAAGCTCTGGTCCAAAACGCTGCGTTTCC 317
Query 361 AATCCTCATCCCTCTCTTCTTCATTTTCCCTTCACCAAAACCAAACCCTGAAACCATCAA 420
| ||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |||
Sbjct 318 ACTCCTCATCCCTCTGTTTTTCATTTTCCCTTCACCAAAACAAAACCAAGAAACCAACAA 377
Query 421 TACTCGCTTCCTCTCCATTCGTCTCATCTTGCTTTACTTCTCCCTTGGTGTTCTTGTTGC 480
||||| |||||||| |||||||| |||| |||||| |||| |||||||||||||||||
Sbjct 378 CACTCGTTTCCTCTCTTTTCGTCTCCTCTTACTTTACATCTCTCTTGGTGTTCTTGTTGC 437
Query 481 TGCTCACAGCAAATTGTATGCACTTGGGAAGTTATACT-CAAGCTATGGCTTCTTCATGC 539
||||||||||||||||| |||||| ||||| ||||| | ||| ||||||| |||||| ||
Sbjct 438 TGCTCACAGCAAATTGTTTGCACTCGGGAAATTATA-TGCAAACTATGGCGTCTTCACGC 496
Query 540 TGATTTCAGGGTCCCAGTTGATCTTTACC-TTGATTTTCACAGCTATCATTAACCGTTTC 598
| ||||| | | |||||||||| |||||| | ||||||||||| |||||||||||||||
Sbjct 497 TCATTTCCGCGACCCAGTTGATATTTACCGCT-ATTTTCACAGCCATCATTAACCGTTTC 555
Query 599 AAGTTTACTAGATGGATCATCATATCGATAGTTCTCATTC-TTGTGAGCTATGCTTTTGG 657
||||| || |||||||| ||| |||||||| | |||| | || ||| |||| ||||||
Sbjct 556 AAGTTCACCAGATGGATTATCTTATCGATAATCCTCA-CCATTTTGATTTATGTTTTTGG 614
Query 658 TGGTCCTGTATTTTCAGGAGAGCCTGATGAAAATGAACATTTCTACGGCATCCAAGCTTG 717
| |||||| |||| |||||||||||||||||| ||| | |||||| ||||||||||||
Sbjct 615 TAGTCCTGAATTTGGAGGAGAGCCTGATGAAAACGAAGAATTCTACAACATCCAAGCTTG 674
Query 718 GTTAACTTTCGCTGCTTCAGTTGCTTTCGCATTATCTCTCTGTTTAGTCCAACTTAGTTT 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 675 GTTAACTTTCGCTGCTTCAGTTGCTTTCGCATTATCTCTCTGTTTAGTCCAACTCGGTTT 734
Query 778 CGAGAAACTGTTGGTGAAGACAAAGAGATATGGTAACAAGAAAGTGTTTAGAATGGTCTT 837
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 735 CGAGAAAGTGTTGGTGAAGACAAAGAGATATGGTAATAAGAAAGTGTTTAGAATGGTCTT 794
Query 838 AGAGATGCAAATATGTGTCTCTTCTGTCGCCTCGGTTGTTTGTCTAGTTGGTTTGTTTGC 897
|||||||||||| |||||||||| ||||||| ||||||||||||| || ||| |||||||
Sbjct 795 AGAGATGCAAATCTGTGTCTCTTTTGTCGCCACGGTTGTTTGTCTCGTGGGTATGTTTGC 854
Query 898 GAGTGGTGAGTATAAGGAGCTGAAAGGCGATAGCGAGAGGTTTAAGAAAGGAGAAACGTA 957
|||||| ||| ||||||| ||| ||||||||||| | | |||||||||||||||| |||
Sbjct 855 GAGTGGCGAGAATAAGGAACTGCAAGGCGATAGCCACAACTTTAAGAAAGGAGAAATGTA 914
Query 958 TTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCGGGCTGAT 1017
||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 915 TTACGTTATGAGTTTGATCGGGTTGGCATTGTCCTGGCAGGTTTGGGCGGTCGGGCTGAT 974
Query 1018 AGGTTTGGTGCTTTATGTTTCGAGTGTTTTTAGTAATATTGTTCATATGTGTGCTTCACC 1077
|||||||||||||||||||||| |||| ||| | || | |||||||||||| |||| ||
Sbjct 975 AGGTTTGGTGCTTTATGTTTCGGGTGTGTTTGGCGATGTGGTTCATATGTGTACTTCCCC 1034
Query 1078 ACTTATGGCTTTTATT-GTTGTGTTGGCATTTGATTTTATCGATGATGATTTTAGTTGGC 1136
|||| ||||||| ||| |||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1035 ACTTGTGGCTTT-ATTTGTTGTGTTGGCATTTGATTTCATGGATGATGAGTTTAGTTGGC 1093
Query 1137 CTAGAATTGGTGCTTTGATAGGATCAG-TATTGGCTTTAGGATCTTACTTCTACACTCTG 1195
||||||||||| ||||||||| | || | ||||||||||||||||||||||| || |||
Sbjct 1094 CTAGAATTGGTACTTTGATAGCAACACCT-TTGGCTTTAGGATCTTACTTCTATACACTG 1152
Query 1196 CACAAAAGAAACAAGAAGAAGATGGTGGAA-TTTAACCAAAGTGAGAACAATGTAGAAGT 1254
|| || |||||||| ||||||||||||||| |||| ||||| ||||||||| | |||||
Sbjct 1153 CATAAGAGAAACAAAAAGAAGATGGTGGAACTTTA-CCAAACAGAGAACAATATTGAAGT 1211
Query 1255 TTAGTCTCTCATGTCAACTGTATATTTGTGTTTCTCAATCTGTTCTTGTT 1304
||||| ||||||| ||| ||||| |||||||||| ||| ||||||||||
Sbjct 1212 TTAGTATCTCATGACAAATGTATGTTTGTGTTTCAAAATATGTTCTTGTT 1261
> Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2
Length=1180
Score = 1181 bits (639), Expect = 0.0
Identities = 1002/1169 (86%), Gaps = 58/1169 (5%)
Strand=Plus/Plus
Query 124 ACATGTTCAGAATCCTGAACCAG-ACC-AAGTCTTGAG-CCAAAG-ACAACTGTTGCAGC 179
|||| |||||||||| ||||| | ||| ||| |||||| || ||| | | | ||| |||
Sbjct 36 ACATATTCAGAATCCAGAACC-GTACCAAAG-CTTGAGTCC-AAGAAGATC-ATTGAAGC 91
Query 180 TAAATCAAAAG-AAATGGTGGATCTCTG-TTCTAATATGTCTTTTCTTAGTCCTGCTTGG 237
|||| | |||| |||||||||||||||| |||| ||||| ||||||||||| |||| ||
Sbjct 92 TAAAAC-AAAGAAAATGGTGGATCTCTGTTTCT-TTATGTATTTTCTTAGTCTTGCTCGG 149
Query 238 AGATTCTCTTGTCATACTTCTCTTGAACTTCTTCTATGTTC-AA--GA-C----C-GTCG 288
|||||||| ||||| |||||||||||||||||||| |||| || || | | ||
Sbjct 150 TGATTCTCTCGTCATGCTTCTCTTGAACTTCTTCTACGTTCAAATGGAGCAAGACTTTC- 208
Query 289 A-GAAGA-TAATAACCAAGATCTACAATACAAAGGAACATGGATGCAAGCTCTGATCCAA 346
| ||| | | || |||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 209 ATGAA-ATTTATGACCAAGATCTGCAATACAAAGGAACATGGACGCAAGCTCTGATCCAA 267
Query 347 AACGCTGCTTTTCCAATCCTCATCCCTCTCTTCTTCATTTTCCCTTCACCAAAACCAAAC 406
|||||||| ||||| |||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 268 AACGCTGCGTTTCCTATCCTCATTCCTCTCTTCTTCATTTTCCCTAAACCAAAACAAAAC 327
Query 407 CCTGAAACCATCAATACTCGCTTCCTCTCCATT-CGTCTCATCTTGCTTTACTTCTCCCT 465
| |||||||| ||||||| | ||||||||| || |||||| |||| |||||||| || ||
Sbjct 328 CTTGAAACCAACAATACTAGATTCCTCTCC-TTGCGTCTCTTCTTCCTTTACTTATCTCT 386
Query 466 TGGTGTTCTTGTTGCTGCTCACAGCAAATTGTATGCACTTGGGAAGTTA-TACTCAAGCT 524
|||||||||||||||||||||||||||||||| |||||| || || ||| | ||||| ||
Sbjct 387 TGGTGTTCTTGTTGCTGCTCACAGCAAATTGTTTGCACTCGGCAAATTAGT-CTCAAACT 445
Query 525 ATGGCTTCTTCATGCTGATTTCAGGGTCCCAGTTGATCTTTACC-TTGATTTTCACAGCT 583
||||| |||||||| ||||||| | |||| ||||| |||||| | ||||| ||||||
Sbjct 446 ATGGCATCTTCATGTTGATTTCCGCAACCCAATTGATATTTACCGCT-ATTTTAACAGCT 504
Query 584 ATCATTAACCGTTTCAAGTTTACTAGATGGATCATCATATCGATAGTT-CTCATTCTTGT 642
||||||||||| ||||||||||||||||||||||||||||||||| || |||| | ||||
Sbjct 505 ATCATTAACCGCTTCAAGTTTACTAGATGGATCATCATATCGATA-TTACTCACTATTGT 563
Query 643 GAGCTATGCTT-TTGGTGGT-CCTGTA-TTTTCAGGAGAGCCTGATGA---A-AATGAAC 695
|| || | || | || | |||| | ||| |||| ||||| |||| | || |||
Sbjct 564 GATTTACG-TTCTCAGT-ATACCTG-ACTTTGGAGGACAGCCTCATGAGGGAGAA-GAAT 619
Query 696 ATTTCTACGGCATCCAAGCTTGGTTAACTTTCGCTGCTTCAG-TTGCTTTCGCATTATCT 754
|| ||| |||||||||||||||| ||||| ||||| | | |||||||| ||||||||
Sbjct 620 ATGGATACAACATCCAAGCTTGGTTAGCTTTCTCTGCTAC-GATTGCTTTCTCATTATCT 678
Query 755 CTCTGTTTAGTCCAACTTAGTTTCGAGAAACTGTTGGTGAAGACAAAGAGATATGGTAAC 814
||||| ||| ||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 679 CTCTGCTTAATCCAACTCGGGTTCGAGAAACTCCTGGTGAAGACAAAGAGATATGGTAAC 738
Query 815 AAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCTCTTCTGTCGCCTCGGTT 874
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 739 AAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCTCTTTTGTCGCCTCGATT 798
Query 875 GTTTGTCTAGTTGGTTTGTTTGCGAGTGGTGAGTATAAGGAGCTGAAAGGCGATAGCGAG 934
||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||| ||
Sbjct 799 ATTTGTCTTGTGGGTTTGTTTGCAAGTGGTGAGTATAAGGAACTGAAAGGTGATAGCAAG 858
Query 935 AGGTTTAAGAAAGGAGAAACGTATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGG 994
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGGTTTAAGAAAGGAGAAGCGTATTACGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGG 918
Query 995 CAGGTTTGGGCGGTCGGGCTGATAGGTTTGGTGCTTTATGTTTCGAGTGTTTTTAGTAAT 1054
|||||||||||||||||||| |||||||||||||||||||||||| || ||||| || ||
Sbjct 919 CAGGTTTGGGCGGTCGGGCTTATAGGTTTGGTGCTTTATGTTTCGGGTCTTTTTGGTGAT 978
Query 1055 ATTGTTCATATGTGTGCTTCACCACTTATGGCTTT-TATTGTTGTGTTGGCATTTGATTT 1113
|||||||||||||| |||||||||||| ||||||| | ||||||| ||||||||||||||
Sbjct 979 ATTGTTCATATGTGCGCTTCACCACTTGTGGCTTTGT-TTGTTGTCTTGGCATTTGATTT 1037
Query 1114 TATCGATGATGAT-TTTAGTTGGCCTAGAATTGGTGCTTTGAT-AGGATCAG-TATTGGC 1170
||| ||||||| | ||||||||| |||||||||||||||| || |||| || | |||||
Sbjct 1038 TATGGATGATG-TGTTTAGTTGGACTAGAATTGGTGCTTT-ATTAGGAACAACT-TTGGC 1094
Query 1171 TTTAGGATCTTACTTCTACACTCTGCACAAAAGAAACAAGAAGAAGATGGTG-GAATTTA 1229
||| |||||||||||||||||||| ||||| |||||||||||||||||| | ||| |||
Sbjct 1095 TTTGGGATCTTACTTCTACACTCTACACAAGAGAAACAAGAAGAAGATG-TCCGAACTTA 1153
Query 1230 ACCAAAGTGAGAACAATGTAGAAGTTTAG 1258
| ||||||| | |||||| |||||||||
Sbjct 1154 ATTAAAGTGA-A-CAATGTTGAAGTTTAG 1180
> Ahg925250 jgi|Araly1|925250|scaffold_200811.1
Length=918
Score = 883 bits (478), Expect = 0.0
Identities = 668/759 (88%), Gaps = 15/759 (2%)
Strand=Plus/Plus
Query 512 TTATACTCAAGCTATGGCTTCTTCATGCTGATTTCAGGGTCCCAGTTGATCTTTACCTTG 571
|||||||||| ||||||| |||||| ||||||||| | | ||||||||||||||||| ||
Sbjct 147 TTATACTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCGTG 206
Query 572 ATTTTCACAGCTATCATTAACCGTTTCAAGTTTACTAGATGGATCATCATATCGATAGTT 631
||||| |||| || || ||||||||||||||||| |||||||| |||||||||||| |
Sbjct 207 GTTTTCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAATC 266
Query 632 CTCATTC-TTGTGAGCTATGCTTTT-GGTGGTCCTGTATTTTCAGGAGAGCCTGATGAAA 689
|||| | || ||| |||| |||| ||| |||||| ||| ||||||||||||||||||
Sbjct 267 CTCA-CCATTTTGATATATG-TTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAA 324
Query 690 ATGAACATTTCTACGGCATCCAAGCTTGGTTAACTTTCGCTGCTTCAGTTGCTTTCGCAT 749
| ||| | ||||||| ||||||||||||||||||||| |||||||||||||| ||| | |
Sbjct 325 ACGAAGAATTCTACGACATCCAAGCTTGGTTAACTTTTGCTGCTTCAGTTGCCTTCCCTT 384
Query 750 TATCTCTCTGTTT-AGTCCAACTTAGTTTCGAGAAACTGTTGGTGAAGACAAAGAGATAT 808
|||||| |||||| || ||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 385 TATCTCCCTGTTTAAG-CCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATAT 443
Query 809 GGTAACAAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCTCTTCTGTCGCC 868
||||||||||||||||||||||||||||| ||| | ||||| |||||||||| ||| |||
Sbjct 444 GGTAACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCC 503
Query 869 TCGGTTGTTTGTCTAGTTGGTTTGTTTGCGAGTGGTGAGTATAAGGAGCTGAAAGGCGAT 928
|||||||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 504 TCGGTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGAT 563
Query 929 AGCGAGAGGTTTAAGAAAGGAGAAACGTATTACGTTCTGAGTTTGGT-CGGGTTGGCTTT 987
||| |||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||
Sbjct 564 AGCAAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTTAGTTTGGTTCGG-TTGGCTTT 622
Query 988 GTCGTGGCAGGTTTGGGCGGTCGGGCTGATAGGTTTGGTGCTTTATGTTTC-GAGTGTTT 1046
|||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||| |
Sbjct 623 GTCGTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGCTCTATGTTTCCG-GTGTGT 681
Query 1047 TTAGTAATATTGTTCATATGTGTGCTTCACCACTTATGGCTTT-TATTGTTGTGTTGGCA 1105
|| || || |||||||||||||| ||||||||||| ||||||| | ||||||| |||||
Sbjct 682 TTGGTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGT-TTGTTGTCTTGGCG 740
Query 1106 TTTGATTTTATCGATGATGATTTTAGTTGGCCTAGAATTGGTGCTTTGATAGGATCAGTA 1165
||||||||||| |||||||| ||||||||||| || |||||| ||||||||| | ||||
Sbjct 741 TTTGATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTT 800
Query 1166 TTGGCTTTAGGATCTTACTTCTACACTCTGCACAAAAGAAACAAGAAGAAGATGGTGGAA 1225
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 801 TTGGCTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAA 860
Query 1226 TTTAACCAAAGTGAGAACAATG-TA--GAAGTTTAGTCT 1261
|||||||||| |||||| || || ||||||||||||
Sbjct 861 CTTAACCAAAGAGAGAACTATAATATTGAAGTTTAGTCT 899
Score = 209 bits (113), Expect = 4e-53
Identities = 135/146 (92%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 305 GATCTACAATACAAAGGAACATGGATGCAAGCTCTGATCCAAAACGCTGCTTTTCCAATC 364
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1 GATCTACAATACAAAGGAACATGGATGCAAGCTGTGATCCAAAACGCTGCGTTTCCAATT 60
Query 365 CTCATCCCTCTCTTCTTCATTTTCCCTTCACCAAAACCAAACCCTGAAACCATCAATACT 424
|||||||||||||||||| ||||| |||||||||||| ||||| ||||||| |||||||
Sbjct 61 CTCATCCCTCTCTTCTTCCTTTTCTCTTCACCAAAACAAAACCAAGAAACCAACAATACT 120
Query 425 CGCTTCCTCTCCATTCGTCTCATCTT 450
|| ||||||||| |||||||||||||
Sbjct 121 CGTTTCCTCTCCTTTCGTCTCATCTT 146
> Ahg925251 jgi|Araly1|925251|scaffold_200812.1
Length=236
Score = 268 bits (145), Expect = 6e-71
Identities = 206/233 (88%), Gaps = 13/233 (6%)
Strand=Plus/Plus
Query 60 ACCAGAGAAAACTCATGGAGATGA-CCGAAGCTTCCAAACATACAACAACACATGAAGAA 118
||||||||||||| |||||||||| || ||||||| ||||| ||||||| ||||||||||
Sbjct 8 ACCAGAGAAAACTTATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAA 66
Query 119 TCAGAACATGTTCAGAATCCTGAACCAGACCAAGTCTTGAG-CCAAAG-ACAACTGTTGC 176
|||||||||||||||||||| |||||||||||| |||| || || ||| | | | ||||
Sbjct 67 TCAGAACATGTTCAGAATCCAGAACCAGACCAAATCTTCAGTCC-AAGAAGATC-GTTGG 124
Query 177 AGCTAAATCAAAAGAAATGGTGGATCTCTGTT-CTAATATGTCTTTTCTTAGTCCTGCTT 235
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 125 AGCTCAATCAAAAGAAATGGTGGATCTCTGTTGC-GCTATGTCTTTTCTTAGTCCTGCTT 183
Query 236 GGAGATTCTCTTGTCAT---A--CTTCTCTTGAACTTCTTCTATGTTCAAGAC 283
||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 184 GGAGATTCTCTCGTCATGCGATGCTTCTCTTGAACTTCTTCTATGTTCAAGAC 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5