BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57990.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1 1940 0.0 Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2 1208 0.0 Ahg925250 jgi|Araly1|925250|scaffold_200811.1 979 0.0 Ahg925251 jgi|Araly1|925251|scaffold_200812.1 200 2e-50 > Ahg475452 jgi|Araly1|475452|fgenesh2_kg.2__582__AT1G57990.1 Length=1295 Score = 1940 bits (1050), Expect = 0.0 Identities = 1199/1271 (94%), Gaps = 10/1271 (1%) Strand=Plus/Plus Query 1 ATTTTCAAATCTTTAAAAGTTGAGACCAGAAGAAGAAGaaaaaaaaTCATGGAGATGACC 60 ||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||| Sbjct 1 ATTTTCAAATCTTCAAAAGTTGAGACC---AGAAGAAG---AAAACTCATGGAGATGACA 54 Query 61 GAAGCTTCCAAACAGACAACAGCAGAAGGATCAGCAAATCCAGAACCAGACCAAATCTTG 120 |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 55 GAAGCTTCAAAACAGACAACAACAGAAGAATCAGCAAATCCAGAACCAGACCAAATCTTG 114 Query 121 AGTCCGAGAAGATCGTTGGAGCTAAAACAAAAG-AAATGGTGGATCTCTGTTTCTTTATG 179 ||||| |||||||| ||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 115 AGTCCAAGAAGATCATTGGAGCTAAATC-AAAGAAAATGGTGGATCTCTGTTTCTTTATG 173 Query 180 TATTTTCTTAGTCTTGCTCGGAGATTCTCTAGTCATGCTTCTCTTGAACTTCTTCTATGT 239 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TCTTTTCTTAGTCTTGCTCGGAGATTCTCTAGTCATGCTTCTCTTGAACTTCTTCTATGA 233 Query 240 TCAAGACAATCGAGAAGATAGTGACCAAGATCTACAATACCGAGGAACATGGTTGCAAGC 299 |||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| Sbjct 234 TCAAAACAATCGAGAAGACAGTGATCAAGATCTACAATACCAAGGAACATGGTTGCAAGC 293 Query 300 TCTGGTCCAAAACGCTGCGTTTCCACTACTCATTCCTCTGTTTTTCATTTTCCCTTCACC 359 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 294 TCTGGTCCAAAACGCTGCGTTTCCACTCCTCATCCCTCTGTTTTTCATTTTCCCTTCACC 353 Query 360 AAAACAAAACCAAGAAACCACCAATACTCGTTTCCTCTCTTTTCGTCTCATCTTACTTTA 419 |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| Sbjct 354 AAAACAAAACCAAGAAACCAACAACACTCGTTTCCTCTCTTTTCGTCTCCTCTTACTTTA 413 Query 420 CATCTCTCTTGGTGTTCTTGTTGCTGCTCACAGCAAATTGTTTGCACTTGGGAAATTATA 479 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 414 CATCTCTCTTGGTGTTCTTGTTGCTGCTCACAGCAAATTGTTTGCACTCGGGAAATTATA 473 Query 480 CGCAAACTTTGGCGTCTTCACGCTGATTTCCGCGACTCAGTTGATATTTACCGCTATTTT 539 ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 474 TGCAAACTATGGCGTCTTCACGCTCATTTCCGCGACCCAGTTGATATTTACCGCTATTTT 533 Query 540 CGCAGCCATTATTAACCGTTTTAAGTTCACCAGATGGATTATCTTATCGATAATCGGCAG 599 | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 534 CACAGCCATCATTAACCGTTTCAAGTTCACCAGATGGATTATCTTATCGATAATCCTCAC 593 Query 600 CATTTTGATTTATGTTTTCGGTAGTCCTGAATTTGGAGGAGAGCCTGATGAAAACGAAGA 659 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 594 CATTTTGATTTATGTTTTTGGTAGTCCTGAATTTGGAGGAGAGCCTGATGAAAACGAAGA 653 Query 660 ATTCTACAGCATCCAAGCTTGGTTAACTTTCGCTGCTTCAGTTGCTTTCGCATTATCTCT 719 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 ATTCTACAACATCCAAGCTTGGTTAACTTTCGCTGCTTCAGTTGCTTTCGCATTATCTCT 713 Query 720 CTGTTTATTCCAACTTTGTTTCGAGAAAGTGTTGGTAAAGACAAAGAGATATGGTAACAA 779 ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct 714 CTGTTTAGTCCAACTCGGTTTCGAGAAAGTGTTGGTGAAGACAAAGAGATATGGTAATAA 773 Query 780 GAAAGTGTTTAGAATGGTCATAGAGATGCAAATTTGTGTCTCTTTTGTCGCAACGGTTGT 839 ||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct 774 GAAAGTGTTTAGAATGGTCTTAGAGATGCAAATCTGTGTCTCTTTTGTCGCCACGGTTGT 833 Query 840 TTGTCTCGTGGGTTTGTTTGCGAGTGGCGAGAATAAGGAACTGCAAGGCGATAGCCACAG 899 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 TTGTCTCGTGGGTATGTTTGCGAGTGGCGAGAATAAGGAACTGCAAGGCGATAGCCACAA 893 Query 900 GTTTAAGAAAGGAGAAACGTATTACGTTTTGAGTTTGATCGGGTTGGCATTGTCGTGGCA 959 |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| Sbjct 894 CTTTAAGAAAGGAGAAATGTATTACGTTATGAGTTTGATCGGGTTGGCATTGTCCTGGCA 953 Query 960 GGTTTGGGCGGTCGGGCTGATGGGTTTGGTGCTTTATGTTTCGGGTGTGTTTGGCGATGT 1019 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 954 GGTTTGGGCGGTCGGGCTGATAGGTTTGGTGCTTTATGTTTCGGGTGTGTTTGGCGATGT 1013 Query 1020 TGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTGTTGGCATTTGATTTCAT 1079 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1014 GGTTCATATGTGTACTTCCCCACTTGTGGCTTTATTTGTTGTGTTGGCATTTGATTTCAT 1073 Query 1080 GGATGATGAGTTTAGTTGGCCTAGAATTGGTACTTTGATAGCAACAG-TTGTGGCTTTAG 1138 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1074 GGATGATGAGTTTAGTTGGCCTAGAATTGGTACTTTGATAGCAACACCTT-TGGCTTTAG 1132 Query 1139 GATCTTACTTCTACACTCTGCATAAGAGAAACAAGAAGAAGATGGTGGAGCTTTACCAAA 1198 ||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1133 GATCTTACTTCTATACACTGCATAAGAGAAACAAAAAGAAGATGGTGGAACTTTACCAAA 1192 Query 1199 CAGAGAACAATATTGACGTTTAGTCTCTCATGTCAAATGTTTGTTTCTGTTTCAAAATAT 1258 |||||||||||||||| ||||||| ||||||| ||||||| ||||| ||||||||||||| Sbjct 1193 CAGAGAACAATATTGAAGTTTAGTATCTCATGACAAATGTATGTTTGTGTTTCAAAATAT 1252 Query 1259 GTTGTTGTTCT 1269 ||| ||||||| Sbjct 1253 GTTCTTGTTCT 1263 > Ahg475454 jgi|Araly1|475454|fgenesh2_kg.2__584__AT1G57943.2 Length=1180 Score = 1208 bits (654), Expect = 0.0 Identities = 1027/1201 (86%), Gaps = 49/1201 (4%) Strand=Plus/Plus Query 49 ATGGAGATGACCGAAGCTTCCAAACAGACAACAGCAGA-AGGA-TCAGCAAATCCAGAAC 106 ||||||||| || ||||||||||||||||| || ||| | | |||| |||||||||| Sbjct 1 ATGGAGATGTCCAAAGCTTCCAAACAGACAGCA--AGACA-TATTCAG--AATCCAGAAC 55 Query 107 CAG-ACCAAATCTTGAGTCCGAGAAGATCGTTGGAGCTAAAACAAAAG-AAATGGTGGAT 164 | | |||||| ||||||||| |||||||| ||| ||||||||| |||| ||||||||||| Sbjct 56 C-GTACCAAAGCTTGAGTCCAAGAAGATCATTGAAGCTAAAAC-AAAGAAAATGGTGGAT 113 Query 165 CTCTGTTTCTTTATGTATTTTCTTAGTCTTGCTCGGAGATTCTCTAGTCATGCTTCTCTT 224 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 114 CTCTGTTTCTTTATGTATTTTCTTAGTCTTGCTCGGTGATTCTCTCGTCATGCTTCTCTT 173 Query 225 GAACTTCTTCTATGTTC-AA--GA-C-A-A---TCGA-G-AAGATAGTGACCAAGATCTA 273 |||||||||||| |||| || || | | | || | | || || |||||||||||| Sbjct 174 GAACTTCTTCTACGTTCAAATGGAGCAAGACTTTC-ATGAAATTTA-TGACCAAGATCTG 231 Query 274 CAATACCGAGGAACATGGTTGCAAGCTCTGGTCCAAAACGCTGCGTTTCC-ACTACTCAT 332 |||||| |||||||||| |||||||||| ||||||||||||||||||| | | ||||| Sbjct 232 CAATACAAAGGAACATGGACGCAAGCTCTGATCCAAAACGCTGCGTTTCCTA-TCCTCAT 290 Query 333 TCCTCTGTTTTTCATTTTCCCTTCACCAAAACAAAACCAAGAAACCACCAATACTCGTTT 392 |||||| || |||||||||||| |||||||||||||| ||||||| ||||||| | || Sbjct 291 TCCTCTCTTCTTCATTTTCCCTAAACCAAAACAAAACCTTGAAACCAACAATACTAGATT 350 Query 393 CCTCTCTTTTCGTCTCATCTTACTTTACATCTCTCTTGGTGTTCTTGTTGCTGCTCACAG 452 |||||| || |||||| |||| |||||| | ||||||||||||||||||||||||||||| Sbjct 351 CCTCTCCTTGCGTCTCTTCTTCCTTTACTTATCTCTTGGTGTTCTTGTTGCTGCTCACAG 410 Query 453 CAAATTGTTTGCACTTGGGAAATTA-TACGCAAACTTTGGCGTCTTCACGCTGATTTCCG 511 ||||||||||||||| || |||||| | | |||||| |||| |||||| | ||||||||| Sbjct 411 CAAATTGTTTGCACTCGGCAAATTAGT-CTCAAACTATGGCATCTTCATGTTGATTTCCG 469 Query 512 CGACTCAGTTGATATTTACCGCTATTTTCGCAGCCATTATTAACCGTTTTAAGTTCACCA 571 | || || |||||||||||||||||||| |||| || |||||||| || ||||| || | Sbjct 470 CAACCCAATTGATATTTACCGCTATTTTAACAGCTATCATTAACCGCTTCAAGTTTACTA 529 Query 572 GATGGATTATCTTATCGATAAT-CGGCAGC-ATTTTGATTTATGTTTTCGGTAGT-CCTG 628 ||||||| ||| |||||||| | | || | ||| ||||||| ||| || ||| | |||| Sbjct 530 GATGGATCATCATATCGATATTACT-CA-CTATTGTGATTTACGTTCTCAGTA-TACCTG 586 Query 629 AATTTGGAGGAGAGCCTGATGAAA-ACGAAGAAT-TC--TACAGCATCCAAGCTTGGTTA 684 | ||||||||| ||||| |||| | ||||||| | |||| |||||||||||||||| Sbjct 587 ACTTTGGAGGACAGCCTCATGAGGGA-GAAGAATATGGATACAACATCCAAGCTTGGTTA 645 Query 685 ACTTTCGCTGCTTC-AGTTGCTTTCGCATTATCTCTCTGTTTATTCCAACTTTGTTTCGA 743 ||||| ||||| | | |||||||| ||||||||||||| ||| ||||||| | ||||| Sbjct 646 GCTTTCTCTGCTACGA-TTGCTTTCTCATTATCTCTCTGCTTAATCCAACTCGGGTTCGA 704 Query 744 GAAAGTGTTGGTAAAGACAAAGAGATATGGTAACAAGAAAGTGTTTAGAATGGTCATAGA 803 |||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 705 GAAACTCCTGGTGAAGACAAAGAGATATGGTAACAAGAAAGTGTTTAGAATGGTCTTAGA 764 Query 804 GATGCAAATTTGTGTCTCTTTTGTCGCAACGGTTGTTTGTCTCGTGGGTTTGTTTGCGAG 863 ||||||||| ||||||||||||||||| || || ||||||| |||||||||||||| || Sbjct 765 GATGCAAATATGTGTCTCTTTTGTCGCCTCGATTATTTGTCTTGTGGGTTTGTTTGCAAG 824 Query 864 TGGCGAGAATAAGGAACTGCAAGGCGATAGCCACAGGTTTAAGAAAGGAGAAACGTATTA 923 ||| ||| ||||||||||| |||| |||||| | |||||||||||||||||| ||||||| Sbjct 825 TGGTGAGTATAAGGAACTGAAAGGTGATAGCAAGAGGTTTAAGAAAGGAGAAGCGTATTA 884 Query 924 CGTTTTGAGTTTGATCGGGTTGGCATTGTCGTGGCAGGTTTGGGCGGTCGGGCTGATGGG 983 |||| |||||||| |||||||||| ||||||||||||||||||||||||||||| || || Sbjct 885 CGTTCTGAGTTTGGTCGGGTTGGCTTTGTCGTGGCAGGTTTGGGCGGTCGGGCTTATAGG 944 Query 984 TTTGGTGCTTTATGTTTCGGGTGTGTTTGGCGATGTTGTTCATATGTGTACTTCACCACT 1043 |||||||||||||||||||||| | ||||| ||| ||||||||||||| |||||||||| Sbjct 945 TTTGGTGCTTTATGTTTCGGGTCTTTTTGGTGATATTGTTCATATGTGCGCTTCACCACT 1004 Query 1044 TGTGGCTTTGTTTGTTGTGTTGGCATTTGATTTCATGGATGATGAGTTTAGTTGGCCTAG 1103 |||||||||||||||||| |||||||||||||| |||||||||| |||||||||| |||| Sbjct 1005 TGTGGCTTTGTTTGTTGTCTTGGCATTTGATTTTATGGATGATGTGTTTAGTTGGACTAG 1064 Query 1104 AATTGGTACTTTGAT-AGCAACAG-TTGTGGCTTTAGGATCTTACTTCTACACTCTGCAT 1161 ||||||| |||| || || |||| || ||||||| |||||||||||||||||||| || Sbjct 1065 AATTGGTGCTTT-ATTAGGAACAACTT-TGGCTTTGGGATCTTACTTCTACACTCTACAC 1122 Query 1162 AAGAGAAACAAGAAGAAGATGGTG-GAGCTTTACCAAACAGAGAACAATATTGACGTTTA 1220 ||||||||||||||||||||| | || ||| | ||| | ||||||| |||| ||||| Sbjct 1123 AAGAGAAACAAGAAGAAGATG-TCCGAACTTAATTAAA--GTGAACAATGTTGAAGTTTA 1179 Query 1221 G 1221 | Sbjct 1180 G 1180 > Ahg925250 jgi|Araly1|925250|scaffold_200811.1 Length=918 Score = 979 bits (530), Expect = 0.0 Identities = 695/774 (90%), Gaps = 14/774 (2%) Strand=Plus/Plus Query 475 TTATACGCAAACTTTGGCGTCTTCACGCTGATTTCCGCGACTCAGTTGATATTTACCGCT 534 |||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 147 TTATACTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCG-T 205 Query 535 -ATTTTCGCAGCCATTATTAACCGTTTTAAGTTCACCAGATGGATTATCTTATCGATAAT 593 ||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||||||| Sbjct 206 GGTTTTCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAAT 265 Query 594 CGGCAGCATTTTGATTTATGTTTTCGGTAGTCCTGAATTTGGAGGAGAGCCTGATGAAAA 653 | || ||||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 266 CCTCACCATTTTGATATATGTTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAAA 325 Query 654 CGAAGAATTCTACAG-CATCCAAGCTTGGTTAACTTTCGCTGCTTCAGTTGCTTTCGCAT 712 ||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||| | | Sbjct 326 CGAAGAATTCTAC-GACATCCAAGCTTGGTTAACTTTTGCTGCTTCAGTTGCCTTCCCTT 384 Query 713 TATCTCTCTGTTTATTCCAACTTTGTTTCGAGAAAGTGTTGGTAAAGACAAAGAGATATG 772 |||||| ||||||| ||||||| | ||||||||| | ||||| |||||||||||||||| Sbjct 385 TATCTCCCTGTTTAAGCCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATATG 444 Query 773 GTAACAAGAAAGTGTTTAGAATGGTCATAGAGATGCAAATTTGTGTCTCTTTTGTCGCAA 832 |||||||||||||||||||||||||| | ||| | |||||||||||||||||||| || Sbjct 445 GTAACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCCT 504 Query 833 CGGTTGTTTGTCTCGTGGGTTTGTTTGCGAGTGGCGAGAATAAGGAACTGCAAGGCGATA 892 ||||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 505 CGGTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGATA 564 Query 893 GCCACAGGTTTAAGAAAGGAGAAACGTATTACGTT-TTGAGTTT-GATCGGGTTGGCATT 950 || | |||||||||||||| ||||| ||||||||| || ||||| | || ||||||| || Sbjct 565 GCAAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTT-AGTTTGGTTC-GGTTGGCTTT 622 Query 951 GTCGTGGCAGGTTTGGGCGGTCGGGCTGATGGGTTTGGTGCTTTATGTTTCGGGTGTGTT 1010 |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 623 GTCGTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGCTCTATGTTTCCGGTGTGTT 682 Query 1011 TGGCGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTGTTGGCATT 1070 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 683 TGGTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCGTT 742 Query 1071 TGATTTCATGGATGATGAGTTTAGTTGGCCTAGAATTGGTACTTTGATAGCAACAGTTGT 1130 |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 743 TGATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTTTT 802 Query 1131 GGCTTTAGGATCTTACTTCTACACTCTGCATAAGAGAAACAAGAAGAAGATGGTGGAGCT 1190 ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| || Sbjct 803 GGCTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAACT 862 Query 1191 TTACCAAACAGAGAAC-A-A-TATTGACGTTTAGTCTCTCAT---GTCAAATGT 1238 | |||||| ||||||| | | |||||| ||||||||| | || ||||||||| Sbjct 863 TAACCAAAGAGAGAACTATAATATTGAAGTTTAGTCTATTATTATGTCAAATGT 916 > Ahg925251 jgi|Araly1|925251|scaffold_200812.1 Length=236 Score = 200 bits (108), Expect = 2e-50 Identities = 188/223 (84%), Gaps = 19/223 (9%) Strand=Plus/Plus Query 42 aaaaaTCATGGAGATGA-CCGAAGCTTCCAAACAGACAAC-A-GCA-GAAG-----GATC 92 |||| | |||||||||| || ||||||| ||||||||||| | || |||| || | Sbjct 15 AAAACTTATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAATCAGAAC 73 Query 93 A-G--CA-AATCCAGAACCAGACCAAATCTTGAGTCCGAGAAGATCGTTGGAGCTAAAAC 148 | | || ||||||||||||||||||||||| ||||| ||||||||||||||||| || | Sbjct 74 ATGTTCAGAATCCAGAACCAGACCAAATCTTCAGTCCAAGAAGATCGTTGGAGCTCAATC 133 Query 149 AAAAGAAATGGTGGATCTCTGTTTCTTTATGTATTTTCTTAGTCTTGCTCGGAGATTCTC 208 ||||||||||||||||||||||| | ||||| ||||||||||| |||| |||||||||| Sbjct 134 AAAAGAAATGGTGGATCTCTGTTGCGCTATGTCTTTTCTTAGTCCTGCTTGGAGATTCTC 193 Query 209 TAGTCATGC--T--T-CTCTTGAACTTCTTCTATGTTCAAGAC 246 | ||||||| | | ||||||||||||||||||||||||||| Sbjct 194 TCGTCATGCGATGCTTCTCTTGAACTTCTTCTATGTTCAAGAC 236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5