BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58007.1
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475450 jgi|Araly1|475450|fgenesh2_kg.2__580__AT1G58007.2 647 0.0
> Ahg475450 jgi|Araly1|475450|fgenesh2_kg.2__580__AT1G58007.2
Length=692
Score = 647 bits (350), Expect = 0.0
Identities = 512/583 (88%), Gaps = 40/583 (7%)
Strand=Plus/Plus
Query 30 AAGACAGTGAAGGAGATTATAGGATTCAGGGACCAAGATCATGTCTCCTCCTAATCCTTA 89
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 1 AAGACAGTGAAGGAGATTATAGGATCCAGAGACCAAGATTATGTCTCCTCCTAATCCTTA 60
Query 90 -G----------G-TGAAGGTTGAAGATGAACGAATCAAGGTCGATAAGGACATGGAGCA 137
| | |||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 61 GGTAACAAAAAAGCTGAAGGTTGAAGATGAACGAGTCGAGGTCGATAAGAACATGGAGCA 120
Query 138 TATACAGAACCAAGGATACTTCAGGGTCATCGATGAATGCGATTTCGTTTGGATTTGTGG 197
||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 TATACAGAACCAAAGAGGCTTCAGGGTCATCTATGAATGCGATTTCGTTTGGGTTTGTGG 180
Query 198 CGACTGCAATATTGATCTTAATGTTCATCATAATGGCAATTCTTGAACATCTCTTCAGGT 257
|||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 181 CGACTGCAATATTGATATTAATGTTCATCATATTGGCAATCCTCGAACATCTCTTCAGGT 240
Query 258 CCGATCATTCTTCTTCTTACGATGTTGATGACTCTTCTCAGTTTCAGAAACTTGCTGAAA 317
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CCGATCATTCTTCTTCTTACGATGTTGATGGCTCTTCTCAGTTTCAGAAACTTGCTGAAA 300
Query 318 AAGCT-TCTATGGTTCCGGTGACTACGTCAGATGTGTCAGTGGTGATGCCGGGAGACAAA 376
||| | ||| |||||||| | ||||||||||||||||| ||||||||||||||||| |||
Sbjct 301 AAG-TCTCTTTGGTTCCGATTACTACGTCAGATGTGTCGGTGGTGATGCCGGGAGAAAAA 359
Query 377 TTACCGTCATACGTAGCTCTTCCGGCACCATTTCCTTGCCGGAGAGAAGGCATTCGCTGG 436
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TTGCCGTCGTACGTAGCTCTTCCGGCGCCATTTCCTTGCCGGAGAGAAGGCATTCGCTGG 419
Query 437 CCTTCCCACCTCTAATAAAGTATTGTCTCTCTTAGCTTAGTCGTTGTATCATAATTACTT 496
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CCTTCCCACCTCTAATATATTATTGTCTCTCTTAGCTTAGTCGTTGTATCATAATT--TT 477
Query 497 ATCAATTGTTCTGATACTTTGAACAATTGCTTGCTGGATCGAAGTTTTAGGTTAAATATT 556
| | || || |||||||||||||| ||||| || ||||| |||
Sbjct 478 -------G-----A-AC----AA---TTGCTTGCTGGATCAAAGTT--AG-TTAAAGATT 514
Query 557 TATGATGATTCTTTATTTTTA-GTAAGAACCGAGGTAGCTAAC 598
| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 515 TCTGATGATTCTTTCTTTTTTTGTAAGAACCGAGGTAGCTAAC 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28973416920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5