BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58025.2 Length=2046 Score E Sequences producing significant alignments: (Bits) Value Ahg475449 jgi|Araly1|475449|fgenesh2_kg.2__579__AT1G58025.1 2217 0.0 Ahg475462 jgi|Araly1|475462|fgenesh2_kg.2__592__AT1G58025.1 1910 0.0 Ahg315425 jgi|Araly1|315425|fgenesh1_pm.C_scaffold_2000458 86.1 9e-16 > Ahg475449 jgi|Araly1|475449|fgenesh2_kg.2__579__AT1G58025.1 Length=1802 Score = 2217 bits (1200), Expect = 0.0 Identities = 1587/1760 (90%), Gaps = 82/1760 (5%) Strand=Plus/Plus Query 210 ATGAAGCGTAAAAGAGGACATAAGAAA-GG--GAAG------AAGTCTAAGACTATCAAT 260 |||||||||||||| |||||||||||| || |||| |||||||||||||||||| Sbjct 1 ATGAAGCGTAAAAGCGGACATAAGAAAGGGAAGAAGTCTAAAAAGTCTAAGACTATCAAT 60 Query 261 GAACAAGGGAACTTGAACGAGTCAACTGAAAACGCGGAGAATCAAACCTCTGAGCATAGT 320 ||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||| ||| Sbjct 61 GAACAAGGGAACTTGAATGAGTCAACCGAAATCGCGGATAATCAAACCTCTGAGCAAAGT 120 Query 321 TCTGAAGCTCCTGTTGAGTGTGAGAATAGTGAACTTGAATCTAAAATGGAGGTTGAT--G 378 ||||||||||||| |||||||||| | | || | |||||||||||||||||||||| | Sbjct 121 TCTGAAGCTCCTGCTGAGTGTGAG-A-A-TG-A--TGAATCTAAAATGGAGGTTGATGCG 174 Query 379 -C----TC--------------CTTCACCTATTGCTGGAAGTGTAGATCTAGCTGATAAT 419 | || ||||||| ||||||| |||||||||| |||||| ||| Sbjct 175 CCTTTGTCTATTGGGAGTGGTAATTCACCTGTTGCTGGGAGTGTAGATCCAGCTGAGAAT 234 Query 420 ATAGCGGCCAAGTCTGTTGCGCGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCTGAA 479 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 235 ATAGCGGCGAAGTCGGTTGCGCGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCAGAA 294 Query 480 CCCAATGAGACATTGCGTGATGATATCGATAAGAGTAGTTCTCAAGCGGTGT-TAGAAAA 538 || ||||||| ||| || |||||||| || || ||||||||| | ||||| Sbjct 295 CCTGATGAGACCTTGGGTAATGATATC-----GA-TA------AAGCGGTGTCT-GAAAA 341 Query 539 ACCTGTTGTGCCTGTTGAGAAAAAGGAGGAATTTG-T--TCCTCGTTTGCCTGAGAGGAA 595 |||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| Sbjct 342 ACCTGTTGTGCCTGCTGAGAAAAAGGAGGAATTGGTTCCTCCTCGTTTGCCTGAGAGGAA 401 Query 596 GCCGGTGTTTCTGAATGTTTACAGGAAAACTAAAGGTATAAGGATAAAGTCTTCGAAGGC 655 |||||||||| |||||||||| ||||||||||||||||||| ||| ||| |||| ||||| Sbjct 402 GCCGGTGTTTTTGAATGTTTATAGGAAAACTAAAGGTATAAAGATTAAGACTTCAAAGGC 461 Query 656 GGTTGATGGGTCTAGCTCGGTTACTGAGAAGAGTGCTACTGATACTGTCAAGGTTCAGGA 715 |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| Sbjct 462 GGTTGATGGGTCTAGCTCGGTTGCTGAGAAGAGTG---CTGATACTGTCGAGGTTCAGGA 518 Query 716 TGTGGTAGTAGGTCAGAAGGATACGAAAACGTCTGAGGAGAATTCTCAAGCTAGTAAGAA 775 || |||||| ||| ||||||||||||||| |||| ||| |||||||||| |||||||| Sbjct 519 TGCAGTAGTACTTCAAAAGGATACGAAAACGCCTGATGAGGATTCTCAAGCCAGTAAGAA 578 Query 776 AGAGGCGGAAATTGCAACGATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATTT 835 |||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 579 AGAGCCAGAAATTGCACCAATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATTC 638 Query 836 ACGATACAATAAGCAAGAACTGGAAGATTCTCTTATTGTGATCAAGAAGATTATGAAGAT 895 ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 639 ACGATACAATAAGCAAGAACTTGAAGATTCTCTTACAGTGATCAAGAAGATTATGAAGAT 698 Query 896 GGAGGCTGCTGATCCTTTTAATGTTCCTGTCAATCCAGAAGCTCTTGGAATTCCTGACTA 955 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 699 GGATGCTGCTGATCCTTTTAATGTTCCTGTGAATCCAGAAGCTCTTGGAATTCCTGACTA 758 Query 956 -TTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAACAATTTTGAGAAAG 1014 ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 759 CTTT-GATATCATCAAGACACCTATGGATTTTGGAACAATATGCAATAATTTTGAGAAAG 817 Query 1015 GCAACAAGTATATGAATTCTGAGGATGTTTACAAGGATGTCAACTACATTTGGAATAACT 1074 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 818 GCAACAAGTATATGAATTCTGAAGATGTTTACAAGGATGTCAACTACATTTGGAATAACT 877 Query 1075 GTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAA 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 GTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAA 937 Query 1135 ATTTCATGAAGTACTGGACTTCAGCAGGGTTGTATACTGAGCAATCAGCAGCAGAAAATA 1194 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 938 ATTTCATGAAGTACTGGACTGCAGCAGGGTTGTATACCGAGCAATCAGCAGCAGAAAATA 997 Query 1195 CAGAAGAT----GG-TGG--------AAAGGCA-TCCA-CAAAGCAGAAGAGTCATAAAC 1239 |||| ||| || || ||||||| || | ||||||||||||||||||||| Sbjct 998 CAGAGGATGGCGGGAAGGCATCCACCAAAGGCAGTCAATCAAAGCAGAAGAGTCATAAAC 1057 Query 1240 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGTCGTA 1299 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| Sbjct 1058 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGGTATGTGTTCTGAAGCGACGTA 1117 Query 1300 AAAGAGAACGTGAACGAGATTCTGGAGCTCAAGAGGAGTCTTCACCTGCGGGAAGTCCGT 1359 ||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| | Sbjct 1118 AAAGAGAACGTGAGCGAGATTCTGGAGCACAAGAGGAATCTTCACCTGCAGGAAGTCCTT 1177 Query 1360 CTGTGGATAATTCATCAGTAAACATGGGTGAGGA-C-----ATGGATATTGATGTTGACA 1413 ||||||||||||||||| |||||||||||||||| | |||||||||| ||||||| Sbjct 1178 CTGTGGATAATTCATCAATAAACATGGGTGAGGAGCAGGATATGGATATTGGTGTTGACG 1237 Query 1414 AGAAACCTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCAAAAACAC 1473 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 ACAAAACTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCAAAAACAC 1297 Query 1474 AAAGAGTGATTGAAAACAAACAAGAGGTGGAGGAAGAGGAAAACGTCGAAGTGGAGAGTG 1533 ||||||| | |||||| ||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1298 AAAGAGTTACTGAAAATAAACAGGAGGTGGAGGAAGAGGAAAACGTTGAAGTGGAGAGTG 1357 Query 1534 AAAATAAAACCAAAGCTAATGTAGAGGACAAGACTCAGTCGATTGATAGATCAATGGAAG 1593 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1358 AAAATAAAACCGAAGCTAATGTAGAGGACAAGACTCAATCGATTGATAGATCAATGGAAG 1417 Query 1594 AGACTGGCGATGAGCCTGTGAATAGTGCTGCAGAGAAATTGGTTGTTTTAGCTTCCCTTG 1653 ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1418 AGACTGGCGATGAACCTGTGACTAGTGCTGCAGAGAAATTGGTTGTTCTAGCTTCCCTTG 1477 Query 1654 AAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACGACTTCAAGAGCAAA 1713 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1478 AAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACAACTCCAAGAGCAAA 1537 Query 1714 AGAAACGGCTGGAGTTAGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAAGTTCCAAG 1773 ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1538 AGAAACGGCAGGAGTTGGAGCGTAAAGAATGGAGAATAAAGATGCAAGAAAAGTTCCAAG 1597 Query 1774 TCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGACAACAACCACA 1833 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1598 TCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGAAAACAACCACA 1657 Query 1834 ATTCCGTATGGAACGGACCTCACTCACTGTTTAGACGTCGCGGAGGTTC---AAATCGTA 1890 ||||||||||||||||||||||||| ||||||| |||| | |||||||| ||||| || Sbjct 1658 ATTCCGTATGGAACGGACCTCACTCGCTGTTTAAACGTAGAGGAGGTTCTTCAAATCATA 1717 Query 1891 GTAGTGCTTTACACAAAGCA 1910 |||||||||||||||||||| Sbjct 1718 GTAGTGCTTTACACAAAGCA 1737 > Ahg475462 jgi|Araly1|475462|fgenesh2_kg.2__592__AT1G58025.1 Length=1774 Score = 1910 bits (1034), Expect = 0.0 Identities = 1511/1728 (87%), Gaps = 86/1728 (5%) Strand=Plus/Plus Query 210 ATGAAGCGTAAAAGAGGACATAAGAAAGGGAAGAAGTCT---AAG-----A-CTATCAAT 260 ||||||||||||||||||||||||||||||||||||||| ||| | |||| | | Sbjct 1 ATGAAGCGTAAAAGAGGACATAAGAAAGGGAAGAAGTCTAAAAAGTCCAAATCTATTACT 60 Query 261 GAACAAGGGAACTTGAACGAGTCAACTGAAAACGCGGAGAATCAAACCTCTGAGCATAGT 320 ||| ||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| ||| Sbjct 61 GAAGAAGGGAACTTGAATGAGTCAACCGAAAACGTGGAGAATCAAACCTCGGAGCAGAGT 120 Query 321 TCTGAAGCTCCTGTTGAGTGTGAGAATAGTGAACTTGAATCTAAAATGGAGGTTGATGCT 380 ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TCTGAAGGTCCTGCTGAGTGTGAGAATAGTGAACATGAATCTAAAATGGAGGTTGATGCA 180 Query 381 CCTTC-AC--CT---ATT-G--------C---TGGAAGTGTAGATCTAGCTGATAATATA 422 ||||| | || ||| | | || |||||||||| |||||||||| || Sbjct 181 CCTTCTTCTACTGAGATTGGTAATTCACCTATTGCTAGTGTAGATCCAGCTGATAATGTA 240 Query 423 GCGGCCAAGTCTGTTGCG-CGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCTGAACC 481 ||||| ||||| || | ||||||||||||||||||||||| || |||||||| ||| | Sbjct 241 GCGGCGAAGTC-AATGGGACGTGTTAAGGTTAAATTGAAGACCTCAAAAGCACCAGAA-C 298 Query 482 CA-ATGAGACATTGCGTGATGATATCGATAAGAGTAGTTCTCAAGCGGTGT-TAGAAAAA 539 || ||||||||| |||||||||||| ||||||||||||||||||| || || | |||||| Sbjct 299 CAGATGAGACATGGCGTGATGATATTGATAAGAGTAGTTCTCAAGTGGGGTCT-GAAAAA 357 Query 540 CCTGTTGTGCCTGTTGAGAAAAAGGAGGAATTTGTTCCT---CGTTTGCCTGAGAGGAAG 596 |||| ||| |||| |||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 358 CCTGCTGTCCCTGCTGAGAAAAAGGAGGAATTGGTTCCTCCGCGTTTGCCTGAGAGAAAG 417 Query 597 CCGGTGTTTCTGAATGTTTACAGGAAAACTAAAGGTATAAGGATAAAGTCTTCGAAGGCG 656 || ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 418 CCAGTGTTTCTGAATGTTTACAGGAAAACTAAGGGTATAAAGATTAAGTCTTCGAAGGCG 477 Query 657 GTTGATGGGTCTAGCTCGGTTACTGAGAAGAGTGCTACTGATACTGTCAAGGTTCAGGAT 716 || ||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||||| Sbjct 478 GTAGATGGATCTAGCTCGGTTACTGAGACGAGTG---CTGATGCTGTCAAGGCCCAGGAT 534 Query 717 GTGGTA-GTAGGTCAGAAGGATACGAAAACGTCT-GAGGAGAATTCTCAAGCTAGTAAGA 774 | | | | ||| |||||||| |||||| || || |||||| ||||||| ||||||| Sbjct 535 G-CAAATGCACCTCAAAAGGATACAAAAACG-CTGGATGAGAATCCTCAAGCCAGTAAGA 592 Query 775 AAGAGGCGGAAATTGCAACGATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATT 834 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||||| Sbjct 593 AAGAGCCAGAAAGTGCACCAATTTCTTTGCCGAAAGAGGAGAAGAAGACTGACCAAAATT 652 Query 835 TACGATACAATAAGCAAGAACTGGAAGATTCTCTTATTGTGATCAAGAAGATTATGAAGA 894 |||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||| Sbjct 653 CACGATACAATAAACAAGAACTGGAGGATTCTCTTACAGTGATCAAAAAGATTATGAAGA 712 Query 895 TGGAGGCTGCTGATCCTTTTAATGTTCCTGTCAATCCAGAAGCTCTTGGAATTCCTGACT 954 |||| ||||||||||| ||||||| |||||| || ||||||||||||||||||||||||| Sbjct 713 TGGATGCTGCTGATCCCTTTAATGCTCCTGTGAACCCAGAAGCTCTTGGAATTCCTGACT 772 Query 955 ATTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAACAATTTTGAGAAAG 1014 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 773 ATTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAATAATTTTGAAAAAA 832 Query 1015 GCAACAAGTATATGAATTCTGAGGATGTTTACAAGGATGTCAACTACATTTGGAATAACT 1074 ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| Sbjct 833 GCAACAAGTATATGAATTCTGAGGACGTTTACAAGGATGTCCAGTACATTTGGAATAACT 892 Query 1075 GTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAA 1134 |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 893 GTTCTAAGTACAATAAGAAAGGTGATTATATTGTGGATTTGATGAAGCGAGTAAAGAAAA 952 Query 1135 ATTTCATGAAGTACTGGACTTCAGCAGGGTTGTATACTGAGCAATCAGCAGCAGAAAATA 1194 |||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||| Sbjct 953 ATTTCATGAAGTACTGGACTGCAGCAGGGTTGTACACTGA--A-TCAGCAGCAGAAAATA 1009 Query 1195 CAGAAGATGGTGGAAAGGCATCCAC-AAAG-CAG--AA-----G-AGT----C-ATAAAC 1239 |||| |||||||| ||| ||||||| |||| ||| || | || | |||||| Sbjct 1010 CAGAGGATGGTGGGAAGTCATCCACCAAAGACAGTCAATCCAAGCAGAAGAGCCATAAAC 1069 Query 1240 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGTCGTA 1299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1070 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGACGTA 1129 Query 1300 AAAGAGAACGTGAACGAGATTCT---GGAG---CT----CA-A-GAGGAGTCTTCACCTG 1347 ||||||||||||||||||||||| ||| || || | ||||| |||||||||| Sbjct 1130 AAAGAGAACGTGAACGAGATTCTCAAGGACATTCTGGAGCACAAGAGGAATCTTCACCTG 1189 Query 1348 CGGGAAGTCCGTCTGTGGATAATTCATCAGTAAACATGGGTGAGGA-CATGGATATTGAT 1406 ||||||||||||||||||||||||||||| |||||||||||||||| || ||| || ||| Sbjct 1190 CGGGAAGTCCGTCTGTGGATAATTCATCAATAAACATGGGTGAGGAGCA-GGACATGGAT 1248 Query 1407 GTTGACAAGAAACCTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCA 1466 |||| | ||| ||| |||| | || ||||||||||||||||||||||||||| Sbjct 1249 ATTGAT--GT----TGA-CAACAAAAC-C-GAGATCGTGGAACTAGATAGTCCGGTGTCA 1299 Query 1467 AAAACACAAAGAGTGATTGAAAACAAACAAGAGGTGGAGGAAGAGGAAAACGTCGAAGTG 1526 || | ||||||||||| |||| | |||||||||||||||||||||||||| || |||||| Sbjct 1300 AAGAGACAAAGAGTGAATGAAGATAAACAAGAGGTGGAGGAAGAGGAAAATGTTGAAGTG 1359 Query 1527 GAGAGTGAAAATAAAACCAAAGCTAATGTAGAGGACAAGACTCAGTCGATTGATAGA-TC 1585 ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| | Sbjct 1360 TAGAGTGAAAATAAAACCGAAGCTAATGTAGAGGATAAGACTCATTCGATTGATAGAGT- 1418 Query 1586 AATGGAAGAGACTGGCGATGAGCCTGTGAATAGTGCTGCAGAGAAATTGGTTGTTTTAGC 1645 || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1419 AACGGAAGAGACTGGCGATGAGCGTGTGACTAGTGCTGCAGAGAAATTGGTTGTTTTAGC 1478 Query 1646 TTCCCTTGAAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACGACTTCA 1705 |||| |||||||||||||||||||||| || || || |||||||||||||||| ||| || Sbjct 1479 TTCCATTGAAGGTCCAAAATCGACTCATAAAGATGAGGAAGAGAAGGAAAAACAACTCCA 1538 Query 1706 AGAGCAAAAGAAACGGCTGGAGTTAGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAA 1765 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1539 AGAGCAAAAGAAACGGCAGGAGTTGGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAA 1598 Query 1766 GTTCCAAGTCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGACAA 1825 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1599 GTTCGAAGTCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAAGGACGA 1658 Query 1826 CAACCACAATTCCGTATGGAACGGACCTCACTCACTGTTTAGACGTCG 1873 ||| ||||||||||| |||||||||||||| || ||||||| || ||| Sbjct 1659 CAATCACAATTCCGTGTGGAACGGACCTCATTCGCTGTTTAAACATCG 1706 > Ahg315425 jgi|Araly1|315425|fgenesh1_pm.C_scaffold_2000458 Length=2637 Score = 86.1 bits (46), Expect = 9e-16 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 1997 ACATTGACCACAGACTGGAGGCTATTGTTGAACAAATGTTGGAAAA 2042 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 ACATTGACCACAGACTGGAGGCTATTGTTGAACAAATGTTGGAAAA 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76942294900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5