BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58070.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475417 jgi|Araly1|475417|fgenesh2_kg.2__547__AT1G58070.1 1591 0.0
> Ahg475417 jgi|Araly1|475417|fgenesh2_kg.2__547__AT1G58070.1
Length=1159
Score = 1591 bits (861), Expect = 0.0
Identities = 1076/1177 (91%), Gaps = 25/1177 (2%)
Strand=Plus/Plus
Query 1 GATTCCACCCAACAAACCAGCAATACCAAATACAATACATTCTTCTCTATCTATAGTTCC 60
||||| ||||||||||||| ||||||| ||||| | ||||||||| |||| |||||
Sbjct 1 GATTCTACCCAACAAACCAACAATACC-AATAC----C-TTCTTCTCTCTCTACCGTTCC 54
Query 61 TCCATGGATATAGA-AGAGATGGAAGGAAATAATCAAGTGGAGGAACATCATGTCGACAC 119
|||||||||||||| | |||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 55 TCCATGGATATAGACA-AGATGGAAGGAAATAACCAAGTAGAGCAGCATCATGTCGACAC 113
Query 120 TTCTCGTCCTTTTAGCTCTGTTAAAGAAGCTGTTGCCATATTTGGCCAACGGATTATGCT 179
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 114 TTCACGTCCTTTTAGCTCGGTAAAAGAAGCTGTTGCCATATTTGGCCAACGGATTATGCT 173
Query 180 ACCGGTACAAACTCATACCATGAACTCTAAATCGGCAAGTCCTATTGCTGCTAGTCGTAG 239
||||||||||||||||||| ||||||||||| ||| |||||||| | ||||| ||||||
Sbjct 174 ACCGGTACAAACTCATACCTTGAACTCTAAACCGGTAAGTCCTA-T--TGCTAATCGTAG 230
Query 240 CATCAACCAGAACGCTAAACCAAGAAGCCCTGGACTCAGCCAGACCGTTAAATTGGTAAT 299
||||| ||||| || |||||||||||| ||||||||||||||||| | |||| |||||
Sbjct 231 CATCAGCCAGACCGATAAACCAAGAAGTCCTGGACTCAGCCAGACTGCTAAACCGGTAAG 290
Query 300 TCCTACTGCTAGTCCTAGCATCAGCCAGACTGCTAAATTGGTAAGTCCTATTGCTAGTCC 359
||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 291 TCCTACTGCTAGTCCTAAAATCAGCCAGACTGCTAAACTGGTAAGTCCTATTGCAAGTCC 350
Query 360 TAGCATAAGCCAGACCGCTTCTTCATCTTCTTCTCCATGGAAGCAACGCTCCTTGTTGCC 419
|| ||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 351 TAACATCAGCCAGACTGCTTCGTCA---TCTTCTCCATGGAAGCAACGCTCCTTGTTGCC 407
Query 420 CCCTTCTCCTCAAGGTCCAAAAGAAGAGATCATGGATGTGTTGAAGAAGCTTGAAGCCGA 479
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 408 CTCTTCTCCTCAAGGTCCAAAAGAGGAGATCATGGATGTTTTGAAGAAGCTTGAAGCTGA 467
Query 480 GATAACGGAAACAAAGACAGAGGTGAAGATGTTGAAGGAGAGAGAATCAGAGACAGAGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GATAACGGAAACAAAGACAGAGGTGAAGATGTTGAAGGAGAGAGAATCAGAGACAGAGGT 527
Query 540 TGCTTTGGCTACTTTAAACGCAGAGCTACATAAGAACAAGTCAAAGATAGCGAAAGCCGA 599
||||||||||||||||| || ||||||||||| |||| ||||||||| || ||||||||
Sbjct 528 GGCTTTGGCTACTTTAAATGCCGAGCTACATAAAAACATGTCAAAGATGGCTAAAGCCGA 587
Query 600 AGCTGATGCTGCAGGGAAGAGCGCGGCAGCCATG-ACGAAATCAGTTAGCTTCAAGGACA 658
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 588 GGCTGATGCTGCAGGGAAGAGCGCGGCAGCCATGGAA-AAATCAGTTAGATTCAAGGACA 646
Query 659 CAAAAGAGAAGGAAAATGGAGAGGACCAGAGGAGGAAAGAGCTGATGAGGAAGATGCAGA 718
|| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 647 CACAAGAGAAGGAAAATAGAGAGGACCAGAGGAGGAAAGAGCTGATGAGGAGGATGCAGA 706
Query 719 AGGAGTATCCTTCATTGGCTCAGATACTTGACAGTAACAAAGGAAACAGAGATGGGTATT 778
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 707 AGGAGTATCCTTCATTGGCTCAGATACTTGACAGTAACAAAGGAGACAGAGATGGGTATT 766
Query 779 TTGCGAACACTaagaagacgaagaagaagaagaaACCTATCATTCCTCTTGTGGGAGATT 838
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 767 TTGCAAAGACTAAGAAGACGAAGAAGAAGAAGAAACCTATCATTCCTCTGGTGGGAGATT 826
Query 839 TCTTCTTCTTCAAGAAGAAAGGTTCTTCGCCTGAAATATCTGGACCTCTTTACACTACCT 898
|||||||||||| |||||| || ||| | ||||||| ||||||||||||||||| ||||
Sbjct 827 TCTTCTTCTTCAGGAAGAAGGGGTCTGCAACTGAAATTTCTGGACCTCTTTACACCACCT 886
Query 899 CTTCCACCCTGCACTTTTAACTGATATACCCAAGATCATGTACCCTGCAAGtgtatatat 958
||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct 887 CTTCCACCCTGCACTTTTAGCTGATACACCCAAGATCATGTACTCTGCAAGTGTATATAT 946
Query 959 atgtatatgtat----gtatgcacatcaatattcgtaatatctatgtatgtatgtgtttt 1014
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATGTATATGTATATATGTATGCACATCAATATTCGTAATATCTATGTATGTATGTGTTTT 1006
Query 1015 cgtgtgagtgtgtttgtgtgtgagcgtattctttatttgtttgtCTCTTTCTCTCTTTGT 1074
||||| ||||| | ||||||| ||||||||||||||||||| | ||| | |||||||
Sbjct 1007 TGTGTG--TGTGT--GCGTGTGAGTGTATTCTTTATTTGTTTGTTTGTTTGTTTCTTTGT 1062
Query 1075 TTGGATTTTGAGTCCAAACCATCAGCGTGTGTTC-CCCCTCTACTGTAACAATTACCTGT 1133
||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1063 TTGGATTTTGAGTGCAAACCATCAGCGTGTGTTCTCCCCTCTCCTATAACAATTACCTGT 1122
Query 1134 CAACTATCAGATTGTGAATATACAATGTTACTCTACT 1170
||||||| |||||||||||||||||||||||||||||
Sbjct 1123 CAACTATTAGATTGTGAATATACAATGTTACTCTACT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5