BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58080.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925185 jgi|Araly1|925185|scaffold_200746.1 2008 0.0
Ahg925187 jgi|Araly1|925187|scaffold_200748.1 1351 0.0
> Ahg925185 jgi|Araly1|925185|scaffold_200746.1
Length=1272
Score = 2008 bits (1087), Expect = 0.0
Identities = 1210/1269 (95%), Gaps = 9/1269 (1%)
Strand=Plus/Plus
Query 104 ACACAACAATGTCTCTCCTTCTCCCTACGAATTTACAACAATACCCTTCTTCTTCCTCCT 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 ACACAACAATGTCTCTCCTTCTCCCTACGAATTTACAACAATACCCTTCTTCTTCCTCCT 72
Query 164 TCCCATCTTCAACACCTATCCTATCTCCGCCTCCTTCCACCGCTTTCTCCGTCATCGTAC 223
||||||||||||||||| |||||||||||||||| ||||||| || | ||||||
Sbjct 73 TCCCATCTTCAACACCTCTCCTATCTCCGCCTCCCTCCACCG------CC-T--TCGTAC 123
Query 224 CTCGTCGGAGATGTCTCAGATTGGTTACTTCTTGTGTCTCCACCGTTCAAAGCTCCGTCG 283
|||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 124 CTCGCCGGAGATGTCTCAGATTAGTCACTTCTTCTGTCTCCACCGTTCAAAGCTCCGTCG 183
Query 284 CAACAAACGGTTCCTCTCCAGCTCCTGCTCCGGCCGCTGTTGTCGTTGAGCGTGACCAGA 343
||||||||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||||
Sbjct 184 CAACAAACGGTTCATCTCCAGCTCCAGCTCCTGCCGCCGTTGTCGTTGAACGAGACCAGA 243
Query 344 TTCGTCTTGGTCTTCCTAGTAAAGGACGTATGGCTGCTGATGCAATCGATCTTCTCAAGG 403
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 244 TTCGTCTTGGTCTTCCTAGTAAAGGACGTATGGCTGCCGATGCAATCGATCTTCTTAAGG 303
Query 404 ACTGTCAACTGTTTGTTAAACAAGTCAATCCTAGGCAATATGTTGCACAGATTCCCCAGT 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACTGTCAACTGTTTGTTAAACAAGTCAATCCTAGGCAATATGTTGCACAGATTCCCCAGT 363
Query 464 TACCAAACACTGAAGTCTGGTTTCAACGGCCAAAAGATATTGTCAGAAAGTTACTCTCAG 523
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 364 TACCAAACACTGAAGTCTGGTTTCAACGGCCAAAAGATATTGTCAGGAAGTTACTCTCTG 423
Query 524 GAGATTTGGATCTAGGTATCGTTGGTCTTGACACACTTAGTGAATATGGTCAGGAAAATG 583
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 424 GAGATTTGGATCTAGGTATCGTTGGTCTTGATACACTTAGTGAATATGGTCAGGAAAATG 483
Query 584 AAGATCTTATCATTGTCCATGAAGCTCTCAACTTTGGAGACTGTCACCTGTCTATTGCGA 643
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 484 AAGATCTTATCATTGTCCATGAAGCTCTCAACTTTGGAGACTGCCACCTATCCATTGCGA 543
Query 644 TTCCAAACTATGGGATATTTGAGAATATAAATTCTCTGAAGGAGCTAGCGCAAATGCCCC 703
| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 544 TACCTAATTATGGGATATTTGAGAATATAAATTCTCTGAAGGAGCTAGCACAAATGCCCC 603
Query 704 AATGGAGTGAAGAGAGACCCTTACGCTTAGCTACTGGCTTCACTTATCTCGGCCCCAAAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 604 AATGGAGTGAAGAGAGACCCTTACGCTTAGCTACTGGCTTCACTTATCTCGGCCCTAAAT 663
Query 764 TTATGAAAGAAAATGGCATAAAGCATGTGGTGTTTTCAACTGCAGACGGAGCACTGGAGG 823
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 664 TTATGAAAGAGAACGGCATAAAGCATGTGGTGTTTTCAACTGCAGACGGAGCCCTGGAGG 723
Query 824 CAGCTCCAGCGATGGGGATAGCTGATGCCATTTTGGATCTTGTGAGTAGTGGTATAACAC 883
||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 724 CAGCTCCGGCGATGGGGATAGCTGATGCCATTTTGGACCTTGTGAGTAGTGGGACAACAC 783
Query 884 TCAAAGAGAACAACTTGAAAGAAATTGAAGGAGGTGTTGTGCTGGAAAGCCAGGCGGCAC 943
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 784 TCAAAGAGAACAACTTAAAAGAAATTGAAGGAGGTGTTGTGCTGGAAAGTCAGGCAGCAC 843
Query 944 TTGTGGCAAGTAGAAGAGCATTAAACGAGAGAAAAGGGGCACTAAACACAGTACACGAGA 1003
|||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 844 TTGTGGCAAGCAGAAGAGCATTGACCGAGAGAAAAGGAGCACTAAACACAGTACACGAGA 903
Query 1004 TTCTTGAGAGATTGGAGGCCCATCTAAAGGCGGATGGCCAATTCACTGTTGTTGCAAACA 1063
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 904 TTCTTGAGAGATTGGAGGCCCATCTAAAGGCGGATGGTCAATTCACTGTTGTTGCAAACA 963
Query 1064 TGAGAGGAAATAGTGCTCAGGAAGTGGCTGAGCGTGTGCTGAGCCAACCATCATTGTCAG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 964 TGAGAGGAAATAGTGCTCAGGAAGTGGCTGAGCGTGTGCTGAGCCAACCATCATTGTCTG 1023
Query 1124 GATTGCAGGGACCGACAATAAGCCCAGTGTACTGTACACAAAATGGAAAAGTATCGGTTG 1183
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1024 GATTGCAGGGACCAACAATAAGCCCAGTGTACAGTACACAAAATGGAAAAGTATCGGTTG 1083
Query 1184 ACTACTATGCCATCGTGATTTGTGTACCAAAAAAGGCCCTATACGACTCTGTGAAGCAAC 1243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ACTACTATGCCATTGTGATTTGTGTACCAAAAAAGGCCCTATACGACTCTGTGAAGCAAC 1143
Query 1244 TTAGAGCGGCCGGAGGCAGTGGGGTATTAGTTTCACCTTTGACCTACATTTTTGATGAGG 1303
| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1144 TGAGAGCGGTTGGAGGCAGTGGGGTATTAGTTTCACCTCTGACCTACATTTTTGATGAGG 1203
Query 1304 ATACTCCAAGATGGGGTCAGCTCCTGAGAAACCTCGGGATTTAAATGCTTTGGTAAGGAA 1363
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1204 ATACTCCAAGATGGGGTCAGCTCCTGAGAAAACTCGGGCTTTAAATGCTTTGGTAAGGAA 1263
Query 1364 GATGCATAT 1372
|||||||||
Sbjct 1264 GATGCATAT 1272
> Ahg925187 jgi|Araly1|925187|scaffold_200748.1
Length=1253
Score = 1351 bits (731), Expect = 0.0
Identities = 1097/1270 (86%), Gaps = 40/1270 (3%)
Strand=Plus/Plus
Query 100 AGCCAC-ACAACAATGTCTCTCCTTCTCCCTACGAATTTACAACAATACCCTTCTTCTTC 158
|||||| ||||| ||||||||||||||||| || ||||||| ||||| || ||||||
Sbjct 12 AGCCACAACAACGATGTCTCTCCTTCTCCCCACCAATTTACTACAAT-GCC--GTTCTTC 68
Query 159 CTCCTTCCCATCTTCAACACCTATCCTATCTCCGCCTCCTTCCACCG-CTTTCTCCGTCA 217
|||| | || || || | || ||| ||| ||| | |||||| |||| |||| ||
Sbjct 69 CTCCCT-CCTTC-TC--C-TCTCTCC-GTCT--TCCT-CAACCACCGCCTTT-TCCGCCA 118
Query 218 TCGTACCTCGTCGGAGATGTC-TCAGATTGGTTACTTCTTGTGTCTCCA-CCGTTCAAAG 275
||| |||| | |||| ||| | | |||||||| |||||||| ||| || | ||||||
Sbjct 119 TCGCACCTTGCCGGATATG-CTTAAGATTGGTCACTTCTTGCGTC-GCATATGATCAAAG 176
Query 276 CTCCGTCGCAACAAACGGTTCCTCTCCAGCTCCTGCTCCGGCCGCTGTTGTCGTTGAGCG 335
||| |||| |||| | | ||| | || | || ||||||||||| |||||
Sbjct 177 CTCTGTCG---TAAACAG-T--TCT---G---CT-C-CC-AAAGCTGTTGTCGTAGAGCG 221
Query 336 TGACCAGATTCGTCTTGGTCTTCCTAGTAAAGGACGTATGGCTGCTGATGCAATCGATCT 395
||||||||||| ||||||||| ||| || ||||| ||||| | || | || ||||
Sbjct 222 AGACCAGATTCGCCTTGGTCTTGTTAGCAAGGGACGCATGGCCACCAATTCGCTCAATCT 281
Query 396 TCTCAAGGACTGTCAACTGTTTGTTAAACAAGTCAATCCTAGGCAATATGTTGCACAGAT 455
||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 282 TCTCAAGGACTGTCAACTGTTCGTGAATCAAGTCAATCCTAGGCAATATGTTGCACAAAT 341
Query 456 TCCCCAGTTACCAAACACTGAAGTCTGGTTTCAACGGCCAAAAGATATTGTCA-GAAAGT 514
||||||||||||||||||| ||||||| ||||||||||||||||| || |||| | ||||
Sbjct 342 TCCCCAGTTACCAAACACTAAAGTCTGTTTTCAACGGCCAAAAGACATCGTCACG-AAGT 400
Query 515 TACTCTCAGGAGATTTGGATCTAGGTATCGTTGGTCTTGACACACTTAGTGAATATGGTC 574
||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 401 TACTCTCAGGAGACTTGGATCTAGGTATCGTTGGTCTTGACAAACTTCGTGAATATGGTC 460
Query 575 AGGAAAATGAAGATCTTATCATTGTCCATGAAGCTCTCAACTTTGGAGACTGTC-ACCTG 633
||||||||||||||||||||||||||||||||||||| ||||| |||| || | | ||
Sbjct 461 AGGAAAATGAAGATCTTATCATTGTCCATGAAGCTCTAAACTTCGGAGGCT-ACTATTTG 519
Query 634 TCTATTGCGATTCCAAACTATGGGATATTTGAGAATATAAATTCTCTGAAGGAGCTAGCG 693
|| |||||||| || |||||||| || |||||||||||||| |||||||||||||||||
Sbjct 520 TCGATTGCGATACCCAACTATGGAATTTTTGAGAATATAAAGTCTCTGAAGGAGCTAGCA 579
Query 694 CAAATGCCCCAATGGAGTGAAGAGAGACCCTTACGC-TTAGCTACTGGCTTCACTTATCT 752
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 580 CAAATGCCCCAATGGAGTGAAGAGAGACCCTTACGCGTT-GCTACTGGCTTCACATATCT 638
Query 753 CGGCCCCAAATTTATGAAAGAAAATGGCATAAAGCATGTGGTGTTTTCAACTGCAGACGG 812
||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||
Sbjct 639 TGGCCCCAAATTTATGAAAGAAAACGGTATAAAGCATGTGACGTTTTCAACTGCATCCGG 698
Query 813 AGCACTGGAGGCAGCTCCAGCGATGGGGATAGCTGATGCCATTTTGGATCTTGTGAGTAG 872
||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 699 AGCTCTGGAGGCAGCTCCGGCGATGGGTATAGCTGATGCCATTTTGGACCTTGTGAGTAG 758
Query 873 TGGTATAACACTCAAAGAGAACAACTTGAAAGAAATTGAAGGAGGTGTTGTGCTGGAAAG 932
||| | ||||||||||||||||||||| ||||| || |||||||||||||||||| || |
Sbjct 759 TGGGACAACACTCAAAGAGAACAACTTAAAAGAGATAGAAGGAGGTGTTGTGCTGCAATG 818
Query 933 CCAGGCGGCACTTGTGGCAAGTAGAAGAGCATTAAACGAGAGAAAAGGGGCACTAAACAC 992
|||| | ||| |||||||||||||||||||| | | ||||||||| ||||||||| ||
Sbjct 819 TAAGGCCGTACTCGTGGCAAGTAGAAGAGCATTGACCAAGAGAAAAGAGGCACTAAATAC 878
Query 993 AGTACACGAGATTCTTGAGAGATTGGAGGCCCATCTAAAGGCGGATGGCCAATTCACTGT 1052
|||||| || ||||| |||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 879 AGTACAAGAAATTCTCGAGAGATTGGAGGCCCATCTGAAGGCGGATAGCCAATTTACTGT 938
Query 1053 TGTTGCAAACATGAGAGGAAATAGTGCTCAGGAAGTGGCTGAGCGTGTGCTGAGCCAACC 1112
|||||||||| | ||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 939 TGTTGCAAACTTCAGAGGAAGTAGTGCTGAGGAAGTGGCTGAGCGTGTGTTGAGCCAACC 998
Query 1113 ATCATTGTCAGGATTGCAGGGACCGACAATAAGCCCAGTGTACTGTACACAAAATGGAAA 1172
|||||||||||||| ||||||||| |||||||||||||| || |||| || | ||||||
Sbjct 999 ATCATTGTCAGGATGGCAGGGACCAACAATAAGCCCAGTTTATTGTAGACGAGGTGGAAA 1058
Query 1173 AGTATCGGTTGACTACTATGCCATCGTGATTTGTGTACCAAAAAAGGCCCTATACGACTC 1232
| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1059 AATATCAATTGACTACTATGCCATTGTGATTTGTGTACCAAAAAAGGCCCTATACGACTC 1118
Query 1233 TGTGAAGCAACTTAGAGCGGCCGGAGGCAGTGGGGTATTAGTTTCACCTTTGACCTACAT 1292
||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1119 TGTGAAGCACCTGAGAGCGGTGGGAGGCAGTGGGGTATTGGTTTCACCTTTGACCTACAT 1178
Query 1293 TTTTGATGAGGATACTCCAAGATGGGGTCAGCTCCTGAGAAACCTCGGGATTTAAATGCT 1352
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |
Sbjct 1179 TTTTGATGAGGATACTCCAAGATGGGGTCAGTTCCTCAGGAACCTCGGGATTTAAATGTT 1238
Query 1353 TTGGTAAGGA 1362
||||||||||
Sbjct 1239 TTGGTAAGGA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5