BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58100.1
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475419 jgi|Araly1|475419|fgenesh2_kg.2__549__AT1G58100.1 2135 0.0
> Ahg475419 jgi|Araly1|475419|fgenesh2_kg.2__549__AT1G58100.1
Length=1516
Score = 2135 bits (1156), Expect = 0.0
Identities = 1431/1554 (92%), Gaps = 58/1554 (4%)
Strand=Plus/Plus
Query 28 AAACTTGAAGGCGACAATCGGAGCTTCCATGGCCGTTTCTTCCTCTTTCACCAAACCCTA 87
|||||||||||| |||||| || ||||||||||||||||||| |||| ||||||||||||
Sbjct 1 AAACTTGAAGGCAACAATCAGACCTTCCATGGCCGTTTCTTCATCTTCCACCAAACCCTA 60
Query 88 ATTTCAATTTCATCTTCTTTTCC-CTTCTTTCTCACCGGAAAATGGATCTCTCCGACATC 146
|||||||| |||||||||||||| |||||||| ||||||||||| | | ||
Sbjct 61 ATTTCAATCTCATCTTCTTTTCCACTTCTTTCACACCGGAAAAT-G--------G--AT- 108
Query 147 CGAAACAACAACAACGACACCGCCGCCGTCGCCACCGGAGGAGGAGCAAGACAGCTAGTT 206
|| | |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 109 CG-----A-AACAACGACACCGCCGCCGT---CACCGGAGGAGGAGCAAGACAACTAGTT 159
Query 207 GACGCATCTCTCTCAATCGTTCCCAGATCTACACC-TCCCGAAGACTCAACACTCGCAAC 265
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 160 GACGCATCTCTCTCAATCGTTCCCAGATCTACACCAT-TAGAAGACTCATCACTCGCAAC 218
Query 266 AACCTCATCTACGGCAACGGCGACTACAACGAAGCGGTCGACTAAAGACCGTCACACGAA 325
|||||||||||| | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 219 AACCTCATCTAC-G--A---CGACTACAACGAAGCGGTCGACGAAAGACCGTCACACGAA 272
Query 326 AGTCGACGGAAGAGGACGTCGGATTCGTATGCCGGCGCTATGTGCAGCTAGAGTTTTTCA 385
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 273 AGTCGACGGAAGAGGACGGCGGATTCGTATGCCGGCGCTTTGTGCAGCTAGGGTTTTTCA 332
Query 386 GTTAACGAGAGAGTTAGGTCATAAATCCGATGGTGAAACTATTGAATGGCTTCTTCAACA 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 333 GTTAACGAGAGAGTTAGGTCATAAATCTGATGGTGAAACTATTGAATGGCTTCTTCAACA 392
Query 446 AGCTGAGCCAGCTATTGTTGCTGCTACAGGTACAGGAACTATTCCGGCGAACTTCTCTAC 505
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 393 AGCTGAGCCAGCGATTGTTGCTGCTACAGGTACAGGAACTATTCCGGCGAACTTTTCTAC 452
Query 506 TTTAAGTGTTTCGTTACGAAGTAGTGGATCGACTCTCTCTGCTCCGCCGTCGAAATCGGT 565
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 453 TTTAAGTGTTTCTTTACGAAGTAGCGGTTCGACTCTCTCTGCTCCGCCGTCGAAATCGGT 512
Query 566 GCCGCTTTACGGTGCTCTTGGATTGACTCATCATCAGTATGATGAACAAGGAGGCGGCGG 625
|||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 513 GCCGCTCTACGGTGCTCTTGGATTGA--C-TCATCAGTATGATGAACAAGGAGGCGGCGG 569
Query 626 TGTGTTTGCTGCTCATACGTCGCCGCTTTTAGGGTTTCATCATCAGCTTC-A-A-C-AC- 680
||| ||||| ||||||||| ||||||||||||||||||||||||| |||| | | | ||
Sbjct 570 TGTTTTTGCGGCTCATACGACGCCGCTTTTAGGGTTTCATCATCACCTTCAACAGCAACA 629
Query 681 -CACCAGAACCAGAATCAGAATCAAGATCCGGTGGAAACTATTCCTGAAGGTGAGAATTT 739
||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 630 ACACCATCATCAGAATCAGAATCAAGATCCGGTGGAAACAATTCCTGAAGGTGAGAATTT 689
Query 740 CTCTAGGAAACGGTATAGATCGGTTGATTTGTCTAAAGAAAACGATGATCGGAAACAGAA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CTCTAGGAAACGGTATAGATCGGTTGATTTGTCTAAAGAAAACGATGATCGGAAACAGAA 749
Query 800 CGAGAATAAATCTTTGAAAGAAAGTGAAACGTCGGGTCCTACGGCGGCGCCGATGTGGGC 859
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 750 CGAGAATAAGTCTTTGAAAGAAAGTGAAACGCCGGGTCCTGCGGCGGCGCCGATGTGGGC 809
Query 860 GGTTGCGCCGCCGAGTAGGTCTGGTGCTGGGAACACTTTTTGGATGCTTCCGGTACCGAC 919
|||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 810 GGTTGCTCCGCCGAGTAGGACTGGTGCTGCAAATACTTTTTGGATGCTTCCGGTACCGAC 869
Query 920 AACGGCCGGTAATCAAATGGAGAGTAGTAGCAACAATAACACCGCCGCAGGCCACCGTGC 979
|||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 870 AACGACCGGTAATCAAATGGAGAGTAGTAGTAACAATACCACCACCGCAGGCCACCGTGC 929
Query 980 TCCTCCTATGTGGCCATTTGTGAACTCTGCTGGAGGAGGAGCGGGAGGTGGAGGCGGAGC 1039
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 930 TCCTCCTATGTGGCCATTTGTAAACTCTGCTGGCGGAGGAGCGGGTGGCGGAGGCGGAGC 989
Query 1040 AGCGACTCACTTTATGGCGGGAACGGGGTTTAGTTTTCCGATGGATCAGTACAGAGGAAG 1099
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 AGCGACTCATTTTATGGCGGGAACGGGGTTTAGTTTTCCGATGGATCAGTACAGAGGAAG 1049
Query 1100 TCCACTTCAGTTAGGTTCTTTTTTAGCTCAGCCGCAGCCGACTCAGAACTTAGGACTAAG 1159
||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1050 TCCACTTCAATTAGGTTCGTTTCTAGCTCAGCCGCAGCCGACTCAGAACTTAGGTCTAAG 1109
Query 1160 TATGCCGGACTCGAATCTCGGGATGTTAGCCGCTTTGAACTCGGCTTATTCAAGAGGCGG 1219
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1110 TATGCCGGACTCGAATCTTGGGATGTTAGCCGCTTTGAACGCGGCTTATTCGAGAGGCGG 1169
Query 1220 AAACGCAAACGCGAATGCGGAACAAGCGAACAATGCGGTGGAGCATCAAGAGAAGCAGCA 1279
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 AAACGCAAACGCGGATGCGGAACAAGCGAACAATGCGGTGGAGCATCAAGAGAAGCAGCA 1229
Query 1280 ACAGAGTGATCATGATGATGATAGTAGAGAGGAGAACTCAAATAGCTCTGAGTGAGTGAT 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 ACAGAGTGATCATGATGATGATAGTAGAGAGGAGAACTCAAATAGCTCTGAGTGAGTGAT 1289
Query 1340 GTAAACTAATCTTGTGAAATCATTGAATGTGGTAAGAAATTGA-TTTAAAGCgtttgtag 1398
||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct 1290 GTAAACTAATCTTGTGAAAGCATTGAATTTGGTAAGAAATTGAATTTAA-GCGTTTGTAG 1348
Query 1399 cggtttggttgattgttttatt-gtgagattttgtgtgttgttgtttagtagtgtttagA 1457
||||||||||||||||||| || |||||| ||||||||||||||||||| || | |
Sbjct 1349 CGGTTTGGTTGATTGTTTTTTTTGTGAGAGTTTGTGTGTTGTTGTTTAG-AG-----A-A 1401
Query 1458 CAAGAACAATTTATGTGTGAAGGAATTGTTAGGTTTGGGTCCAAATGGACTCTCATGGGT 1517
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1402 ---GAA---TTTGTGTGTGAAGGAATTGTTAGGTTTGGGTCCAAATGGACTCTTGTGGGT 1455
Query 1518 AGAGAATGTTTTCAATGTATAGAAGGAATGATAGTCTTTTCGATTTTTCAGTTT 1571
|||| |||||||||||||||||||||||||||||| ||| | ||| || |||||
Sbjct 1456 AGAGTATGTTTTCAATGTATAGAAGGAATGATAGT-TTT-C-ATTGTTGAGTTT 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61096752980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5