BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58110.1
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907601 jgi|Araly1|907601|Al_scaffold_0002_682 1640 0.0
> Ahg907601 jgi|Araly1|907601|Al_scaffold_0002_682
Length=1119
Score = 1640 bits (888), Expect = 0.0
Identities = 1049/1127 (93%), Gaps = 10/1127 (1%)
Strand=Plus/Plus
Query 62 ATGGCTAGCTCCAAGGGATCACAGAGTGTTAGAAACTTGATGTACCCGGGAAAGCATGCT 121
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTAGCTCTAAAGGATCACAGAGTGTTAGAAACTTGATGTACCCAGGAAAGCATGCT 60
Query 122 TTGCTCCCACCAAAAATACCGTTTCCTAGTGTATCAGCATCGTATTCCGAGTATATTCCT 181
||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 61 TTGCTCCCACCAAAAATTCCCTTTCCTAGTGTTTCAGCATCGTATTCTGAGTATATTCCA 120
Query 182 ACTGGTTTGATTGGTTCAAGACATGGTCAGAAGCTTAGTAATGAGAAAACACATCACCAG 241
| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 121 AGTGGTTTGATTGGTTCAAGGCATGGTCAGAAGCTTAGTGATGAGAAAACGCATCACCAG 180
Query 242 CGAACTTCCTCCGAGAGCCATTTGGTAGAAGAGCTTCCCTTTTGGCTTGATGATCTTCTC 301
|| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CGGACTTCTTCTGAGAGCCATTTGGTAGAAGAGCTTCCTTTTTGGCTTGATGATCTTCTC 240
Query 302 AATGAGCAGCCGGAAAGCCCTGCTCGAAAATGTGGTCATCGGCGTTCATCAAGTGACTCT 361
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AAT--G-AGCCGGAAAGCCCTGCTCGCAAATGTGGTCATCGGCGTTCATCAAGTGACTCT 297
Query 362 TACGCTTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTCCAAAATGATTTC 421
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 TACGCGTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTTCAAAATGATTTC 357
Query 422 AGTTATAGGAATACTGTTT-TATCCACTCAAAGAGGAGTCCAAGAGCTTGACCGGAATAA 480
|||||||||||||| |||| | ||||||||||| ||| | || |||||||||||||||||
Sbjct 358 AGTTATAGGAATACGGTTTCT-TCCACTCAAAGGGGAATTCAGGAGCTTGACCGGAATAA 416
Query 481 AAATGCTCAGGATGCTGCCTTCTACTCTGGTGCTAGTTTTCTGAAACAGAAGAGTCGTCA 540
||||||||| ||||| || |||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 417 AAATGCTCAAGATGCCGCTTTCTACTCTGATGCTAATTTTCTGAAACAGAAGAGTCGACA 476
Query 541 GCGGGATTCTTTGGTGGCAACTGGGGCTTGTCCTTCTTGGTTACCTTTCGCTCGTGAGAA 600
||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||| ||||
Sbjct 477 GCGGGATTCTTTGGTGGCATCTGGCGCTCGTCCTTCTTGGCTACCTTTCGCTCGAGAGAG 536
Query 601 CGGTGGCGGAAAAAACTTGGGAGCTTTATATATGTCTCAAGATGCAACAGTAATATCGTC 660
| |||||| |||||| ||||| | |||||||||||||||||||||||||||||| |
Sbjct 537 TGCTGGCGGGAAAAACATGGGATCGTTATATATGTCTCAAGATGCAACAGTAATA---AC 593
Query 661 AGAAAGAAAGAACTATGCTGAACCTTTTTCTCATGACCC-AAAGATGTTATCTTCTGAGG 719
|||||||||||||||||| |||||| ||||||||||||| ||| |||||||||| |||||
Sbjct 594 AGAAAGAAAGAACTATGCCGAACCTCTTTCTCATGACCCGAAA-ATGTTATCTTTTGAGG 652
Query 720 AAAACAACTCCAATCCTTCGCCTGTGACTTATGAAGCTGACAACACAAAACGAGCCAAAC 779
||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||
Sbjct 653 AAAACAACTCCAATCCTCCACCTGTGACTTATGAAGCTGACAATACGAAACGAGCCAAAC 712
Query 780 AGCAATTTGCACAAAGATCACGGGTCCGTAAGCTCCAGTACATATCTGAGCTAGAAAGAA 839
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 713 AGCAATTTGCACAACGATCACGGGTCCGTAAGCTCCAATACATATCTGAGCTAGAAAGAA 772
Query 840 ATGTACAGACATTGCAGGCAGAAGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACC 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ATGTACAAACATTGCAGGCAGAAGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACC 832
Query 900 AGAGGAATCTTATTCTGAGTATGGAAAATAAAGCTCTCAAGAAGCGTCTCGAAAGTATAG 959
|||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||
Sbjct 833 AGAGAAATCTTATTCTGAGTATGGAAAATAAAGCTCTTAAGCAGCGACTCGAAACTATAG 892
Query 960 CTCAGGAGAAGCTTATCAAACAATTGGAACAAGAAGTGTTGGAAAAGGAGATTGGGAGAC 1019
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 893 CTCAGGAGAAGCTTATCAAACAGTTGGAACAAGAACTGTTGGAAAAGGAGATTGGAAGAC 952
Query 1020 TACGAGCGTTGTATCAGCAACAACAACAAACTCAAAAACCATCAGCCAGTCGCGGACGTG 1079
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 953 TACGAGCGTTGTATCAGCAACAACAACAAACTCCAAAACCATCAGCAACTCGCGGACGTG 1012
Query 1080 CTACTAGCAAAGATCTCGACTCTCAGTTCTCCAGTCTTTCACTGAACACCAAAGATTCCA 1139
|| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 1013 CTGCTAGCAAAGATCTCGACTCTCAGTTCTCGAGTCTTTCCCTCAACACCAAAGATTCCA 1072
Query 1140 ACTGTAGGCGTGACTCTGTATCTGTGATGGGTCAATTCCACTTTTAG 1186
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 ACTGTAGGCGTGACTCTGTATCTGTGATGGGTCAATTCCACTTTTAG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5